Wall clock time and date at job start Tue Mar 9 2021 15:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86300 * 109.47089 * 2 1 4 4 C 1.86303 * 109.47261 * 240.00026 * 2 1 3 5 5 C 1.86301 * 109.47210 * 120.00123 * 2 1 3 6 6 S 1.81398 * 109.47071 * 59.04589 * 5 2 1 7 7 C 1.81396 * 102.99992 * 184.42347 * 6 5 2 8 8 C 1.53000 * 109.47060 * 175.57543 * 7 6 5 9 9 N 1.46500 * 109.47316 * 180.02562 * 8 7 6 10 10 C 1.34774 * 120.00329 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99776 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99981 * 180.02562 * 10 9 8 13 13 C 1.53000 * 109.46969 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47305 * 180.02562 * 13 12 10 15 15 O 1.42900 * 109.47155 * 180.02562 * 14 13 12 16 16 C 1.35897 * 116.99719 * 179.97438 * 15 14 13 17 17 C 1.38718 * 120.05812 * 359.72566 * 16 15 14 18 18 C 1.38165 * 119.94107 * 179.71978 * 17 16 15 19 19 C 1.38241 * 120.05858 * 0.57525 * 18 17 16 20 20 C 1.38283 * 120.11006 * 359.68082 * 19 18 17 21 21 C 1.50702 * 119.97256 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.47040 * 245.02180 * 21 20 19 23 23 Si 1.86310 * 109.46916 * 5.01904 * 21 20 19 24 24 H 1.48490 * 109.47199 * 60.00091 * 23 21 20 25 25 H 1.48502 * 109.46910 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46917 * 299.99721 * 23 21 20 27 27 C 1.38122 * 120.05841 * 0.03665 * 20 19 18 28 28 H 1.08994 * 109.47378 * 299.99987 * 1 2 3 29 29 H 1.09002 * 109.47070 * 60.00189 * 1 2 3 30 30 H 1.09004 * 109.47272 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47104 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47386 * 299.99565 * 3 2 1 33 33 H 1.09005 * 109.47303 * 60.00183 * 3 2 1 34 34 H 1.08995 * 109.47187 * 297.55881 * 4 2 1 35 35 H 1.09005 * 109.46739 * 57.55742 * 4 2 1 36 36 H 1.09006 * 109.47085 * 177.55881 * 4 2 1 37 37 H 1.09003 * 109.46733 * 299.05101 * 5 2 1 38 38 H 1.08997 * 109.47373 * 179.04948 * 5 2 1 39 39 H 1.09004 * 109.47028 * 55.58324 * 7 6 5 40 40 H 1.08996 * 109.47527 * 295.58346 * 7 6 5 41 41 H 1.09004 * 109.47023 * 60.00764 * 8 7 6 42 42 H 1.08996 * 109.47606 * 300.00754 * 8 7 6 43 43 H 0.97009 * 119.99902 * 0.02562 * 9 8 7 44 44 H 1.09004 * 109.47144 * 60.00313 * 12 10 9 45 45 H 1.08996 * 109.47501 * 300.00279 * 12 10 9 46 46 H 1.09004 * 109.47023 * 60.00678 * 13 12 10 47 47 H 1.08996 * 109.47606 * 300.00667 * 13 12 10 48 48 H 1.08994 * 109.46636 * 60.00260 * 14 13 12 49 49 H 1.09000 * 109.46986 * 300.00346 * 14 13 12 50 50 H 1.07998 * 120.02657 * 0.02562 * 17 16 15 51 51 H 1.08010 * 119.96707 * 180.27549 * 18 17 16 52 52 H 1.07997 * 119.94305 * 179.69737 * 19 18 17 53 53 H 1.09000 * 109.47654 * 125.01811 * 21 20 19 54 54 H 0.96695 * 114.00060 * 60.00011 * 22 21 20 55 55 H 1.08002 * 120.03018 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5211 6 16 1.8562 -2.5801 1.5354 7 6 2.4434 -3.2183 3.1286 8 6 1.8964 -4.6307 3.3451 9 7 2.3701 -5.1459 4.6321 10 6 2.0124 -6.3808 5.0365 11 8 1.2979 -7.0653 4.3352 12 6 2.4993 -6.9105 6.3606 13 6 1.9524 -8.3229 6.5771 14 6 2.4462 -8.8606 7.9218 15 8 1.9358 -10.1800 8.1236 16 6 2.2833 -10.8058 9.2788 17 6 3.1032 -10.1656 10.1964 18 6 3.4503 -10.8018 11.3727 19 6 2.9909 -12.0800 11.6302 20 6 2.1778 -12.7225 10.7146 21 6 1.6782 -14.1156 10.9987 22 8 2.2293 -15.0235 10.0426 23 14 2.2016 -14.6255 12.7126 24 1 1.6291 -13.6822 13.7062 25 1 1.7099 -15.9985 12.9923 26 1 3.6836 -14.6026 12.8049 27 6 1.8231 -12.0886 9.5398 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.5739 1.7565 0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1569 -1.9177 -1.4996 35 1 2.0853 -0.3902 -2.4106 36 1 3.5732 -0.8405 -1.5433 37 1 2.1346 -0.3547 2.4110 38 1 3.5738 -0.8931 1.5127 39 1 2.0962 -2.5673 3.9310 40 1 3.5330 -3.2465 3.1294 41 1 2.2436 -5.2817 2.5427 42 1 0.8068 -4.6025 3.3442 43 1 2.9413 -4.5983 5.1932 44 1 2.1510 -6.2596 7.1626 45 1 3.5889 -6.9382 6.3625 46 1 2.3004 -8.9741 5.7752 47 1 0.8628 -8.2950 6.5754 48 1 2.0979 -8.2094 8.7233 49 1 3.5358 -8.8886 7.9238 50 1 3.4659 -9.1687 9.9937 51 1 4.0851 -10.3020 12.0895 52 1 3.2674 -12.5775 12.5480 53 1 0.5905 -14.1326 10.9310 54 1 3.1955 -15.0604 10.0467 55 1 1.1883 -12.5909 8.8249 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310322_4549616.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:03:49 Heat of formation + Delta-G solvation = -138.763176 kcal Electronic energy + Delta-G solvation = -28521.130915 eV Core-core repulsion = 24386.571737 eV Total energy + Delta-G solvation = -4134.559178 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 385.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.30681 -40.83763 -39.19635 -37.30467 -36.55364 -34.92019 -32.46319 -32.00323 -31.11875 -29.97527 -28.80297 -28.33618 -28.31200 -28.20339 -26.80414 -24.46695 -23.71727 -23.12418 -21.88047 -21.45715 -19.21503 -18.28440 -17.96774 -17.52487 -17.34331 -17.15759 -16.86103 -16.84227 -16.74903 -16.17599 -15.84209 -15.62247 -15.13924 -14.95017 -14.87250 -14.79601 -14.49366 -14.42083 -14.24239 -14.10979 -13.97155 -13.66426 -13.51778 -13.40216 -13.34748 -13.19849 -13.12841 -13.08253 -13.02701 -12.99099 -12.82585 -12.74834 -12.33602 -12.27198 -12.11830 -11.87775 -11.61198 -11.50224 -11.32296 -11.16120 -10.77986 -10.74953 -10.63453 -10.46077 -10.24594 -9.92812 -9.25387 -8.63898 0.21068 0.39082 0.51403 1.16249 1.47300 1.47536 1.54626 1.55907 1.76648 1.89689 1.93497 1.99569 2.13681 2.44980 2.64766 2.67227 3.51532 3.59833 3.66355 3.69583 3.83193 3.84183 3.88290 3.96215 4.08172 4.21068 4.21432 4.32921 4.33479 4.35595 4.40288 4.45958 4.55991 4.62368 4.64252 4.70260 4.77863 4.80864 4.81255 4.81860 4.85742 4.85915 4.86864 4.94517 4.98661 5.00239 5.14487 5.26624 5.30782 5.36631 5.43664 5.56429 5.65259 5.66101 5.73236 6.42685 6.45197 6.68393 7.17985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.082 2.918 3 C -0.447 4.447 4 C -0.465 4.465 5 C -0.379 4.379 6 S -0.275 6.275 7 C -0.097 4.097 8 C 0.137 3.863 9 N -0.716 5.716 10 C 0.508 3.492 11 O -0.590 6.590 12 C -0.125 4.125 13 C -0.103 4.103 14 C 0.058 3.942 15 O -0.338 6.338 16 C 0.117 3.883 17 C -0.206 4.206 18 C -0.074 4.074 19 C -0.174 4.174 20 C -0.084 4.084 21 C -0.089 4.089 22 O -0.554 6.554 23 Si 0.995 3.005 24 H -0.255 1.255 25 H -0.277 1.277 26 H -0.246 1.246 27 C -0.148 4.148 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.421 0.579 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.154 0.846 51 H 0.156 0.844 52 H 0.136 0.864 53 H 0.119 0.881 54 H 0.389 0.611 55 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.692 8.458 5.267 12.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.273 2.727 3 C -0.557 4.557 4 C -0.571 4.571 5 C -0.571 4.571 6 S -0.049 6.049 7 C -0.245 4.245 8 C 0.012 3.988 9 N -0.370 5.370 10 C 0.296 3.704 11 O -0.470 6.470 12 C -0.164 4.164 13 C -0.141 4.141 14 C -0.016 4.016 15 O -0.252 6.252 16 C 0.072 3.928 17 C -0.224 4.224 18 C -0.092 4.092 19 C -0.192 4.192 20 C -0.084 4.084 21 C -0.198 4.198 22 O -0.361 6.361 23 Si 0.818 3.182 24 H -0.179 1.179 25 H -0.203 1.203 26 H -0.170 1.170 27 C -0.166 4.166 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.258 0.742 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.102 0.898 49 H 0.102 0.898 50 H 0.172 0.828 51 H 0.173 0.827 52 H 0.153 0.847 53 H 0.137 0.863 54 H 0.238 0.762 55 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.121 7.029 4.558 9.819 hybrid contribution 1.051 0.893 0.446 1.450 sum 6.173 7.922 5.004 11.221 Atomic orbital electron populations 1.26318 1.22106 1.04168 1.04415 0.77852 0.65454 0.66306 0.63060 1.26090 1.06686 1.17789 1.05100 1.26328 1.06472 1.08125 1.16184 1.28215 1.09777 0.97786 1.21308 1.87226 1.74787 1.16028 1.26908 1.23549 1.04614 0.97985 0.98340 1.20831 0.99087 0.92894 0.85960 1.45874 1.53041 1.16760 1.21340 1.21286 0.79380 0.80987 0.88793 1.90753 1.39296 1.58879 1.58056 1.21530 1.04584 0.96202 0.94085 1.21165 1.01546 0.95697 0.95732 1.22990 0.99669 0.80791 0.98188 1.86057 1.70925 1.31575 1.36670 1.19216 0.94963 0.92544 0.86077 1.21586 1.02424 1.02593 0.95810 1.21262 0.97601 0.93997 0.96319 1.21209 1.00769 0.96973 1.00216 1.20211 0.97402 0.96827 0.93992 1.25220 1.03138 0.86395 1.05076 1.86495 1.27050 1.62293 1.60286 0.85042 0.80637 0.78998 0.73492 1.17852 1.20257 1.16982 1.20360 1.04211 0.93236 0.98841 0.91044 0.91254 0.91868 0.90600 0.90716 0.90586 0.91929 0.91222 0.91023 0.87269 0.87452 0.87865 0.87990 0.92378 0.92235 0.74161 0.85164 0.85174 0.92197 0.92177 0.89750 0.89771 0.82822 0.82678 0.84693 0.86290 0.76189 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.88 8.65 113.37 0.98 1.86 16 2 Si 1.08 -6.47 12.30 68.60 0.84 -5.62 16 3 C -0.45 2.74 8.65 113.37 0.98 3.72 16 4 C -0.46 0.86 8.65 113.37 0.98 1.84 16 5 C -0.38 2.09 5.14 113.37 0.58 2.67 16 6 S -0.27 -0.08 20.84 -56.49 -1.18 -1.26 16 7 C -0.10 0.42 6.05 71.98 0.44 0.85 16 8 C 0.14 0.05 5.68 86.38 0.49 0.54 16 9 N -0.72 2.61 5.56 -463.06 -2.57 0.03 16 10 C 0.51 0.93 7.83 87.66 0.69 1.61 16 11 O -0.59 -8.02 15.98 -3.03 -0.05 -8.07 16 12 C -0.12 0.84 5.70 29.85 0.17 1.01 16 13 C -0.10 -0.02 4.87 30.60 0.15 0.13 16 14 C 0.06 -0.14 4.74 71.98 0.34 0.20 16 15 O -0.34 -2.05 10.14 -92.39 -0.94 -2.99 16 16 C 0.12 0.59 6.69 22.51 0.15 0.74 16 17 C -0.21 0.05 9.04 22.37 0.20 0.25 16 18 C -0.07 0.11 10.04 22.25 0.22 0.33 16 19 C -0.17 -0.07 8.67 22.28 0.19 0.12 16 20 C -0.08 -0.25 5.35 -19.88 -0.11 -0.36 16 21 C -0.09 -0.10 2.80 71.24 0.20 0.10 16 22 O -0.55 -1.64 12.83 -148.98 -1.91 -3.55 16 23 Si 1.00 -0.99 25.14 68.60 1.72 0.74 16 24 H -0.25 0.09 7.11 99.48 0.71 0.80 16 25 H -0.28 -0.74 7.11 99.48 0.71 -0.03 16 26 H -0.25 0.49 7.04 99.48 0.70 1.19 16 27 C -0.15 -0.93 9.62 22.37 0.22 -0.72 16 28 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 29 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 30 H 0.06 0.06 7.96 -2.39 -0.02 0.04 16 31 H 0.07 -0.51 7.96 -2.39 -0.02 -0.52 16 32 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 33 H 0.07 -0.51 7.96 -2.38 -0.02 -0.53 16 34 H 0.06 0.06 7.96 -2.39 -0.02 0.04 16 35 H 0.07 -0.13 7.96 -2.38 -0.02 -0.15 16 36 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 37 H 0.11 -0.85 7.96 -2.39 -0.02 -0.87 16 38 H 0.11 -0.80 7.96 -2.39 -0.02 -0.82 16 39 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 40 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 41 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 42 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.42 -4.87 8.47 -92.70 -0.79 -5.65 16 44 H 0.13 -1.64 8.14 -2.38 -0.02 -1.66 16 45 H 0.13 -1.63 8.14 -2.39 -0.02 -1.65 16 46 H 0.06 0.29 8.10 -2.38 -0.02 0.28 16 47 H 0.06 0.29 8.10 -2.39 -0.02 0.27 16 48 H 0.08 -0.55 7.67 -2.39 -0.02 -0.57 16 49 H 0.08 -0.55 7.65 -2.39 -0.02 -0.56 16 50 H 0.15 -0.92 6.30 -2.91 -0.02 -0.94 16 51 H 0.16 -1.11 8.06 -2.91 -0.02 -1.13 16 52 H 0.14 -0.39 4.86 -2.91 -0.01 -0.40 16 53 H 0.12 0.04 7.96 -2.39 -0.02 0.02 16 54 H 0.39 -1.51 8.70 -74.06 -0.64 -2.15 16 55 H 0.12 0.96 8.06 -2.91 -0.02 0.94 16 Total: 0.00 -24.83 462.60 2.98 -21.85 By element: Atomic # 1 Polarization: -16.23 SS G_CDS: 0.18 Total: -16.04 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 6.88 Total: 14.91 kcal Atomic # 7 Polarization: 2.61 SS G_CDS: -2.57 Total: 0.03 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -2.90 Total: -14.61 kcal Atomic # 14 Polarization: -7.45 SS G_CDS: 2.57 Total: -4.89 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -1.18 Total: -1.26 kcal Total: -24.83 2.98 -21.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_4549616.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.915 kcal (2) G-P(sol) polarization free energy of solvation -24.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds