Wall clock time and date at job start Tue Mar 9 2021 15:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47390 * 2 1 4 4 C 1.86301 * 109.47055 * 240.00343 * 2 1 3 5 5 C 1.86300 * 109.47401 * 120.00384 * 2 1 3 6 6 S 1.81401 * 109.46898 * 59.04667 * 5 2 1 7 7 C 1.81405 * 102.99789 * 184.42316 * 6 5 2 8 8 C 1.53001 * 109.47109 * 175.57473 * 7 6 5 9 9 N 1.46500 * 109.47032 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99965 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00084 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00002 * 180.02562 * 10 9 8 13 13 O 1.42907 * 109.47115 * 179.97438 * 12 10 9 14 14 C 1.35898 * 116.99950 * 179.97438 * 13 12 10 15 15 C 1.38714 * 120.05546 * 359.97438 * 14 13 12 16 16 C 1.38163 * 119.94352 * 180.02562 * 15 14 13 17 17 C 1.38249 * 120.05632 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.94661 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.47157 * 245.00271 * 18 17 16 20 20 Si 1.86305 * 109.47071 * 4.99762 * 18 17 16 21 21 H 1.48504 * 109.46583 * 60.00029 * 20 18 17 22 22 H 1.48494 * 109.47117 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47270 * 300.00219 * 20 18 17 24 24 C 1.38288 * 120.10720 * 0.27252 * 17 16 15 25 25 C 1.38122 * 120.05772 * 359.45110 * 24 17 16 26 26 N 1.48006 * 120.02819 * 180.29644 * 25 24 17 27 27 O 1.21805 * 120.00003 * 0.24926 * 26 25 24 28 28 O 1.21801 * 120.00175 * 180.24988 * 26 25 24 29 29 H 1.08999 * 109.46733 * 299.99472 * 1 2 3 30 30 H 1.08996 * 109.47032 * 59.99811 * 1 2 3 31 31 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47245 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47141 * 300.00645 * 3 2 1 34 34 H 1.09007 * 109.46593 * 60.00193 * 3 2 1 35 35 H 1.08998 * 109.47176 * 297.55553 * 4 2 1 36 36 H 1.08999 * 109.47205 * 57.55255 * 4 2 1 37 37 H 1.09001 * 109.47710 * 177.55581 * 4 2 1 38 38 H 1.09000 * 109.46988 * 299.04900 * 5 2 1 39 39 H 1.09003 * 109.47032 * 179.04700 * 5 2 1 40 40 H 1.09006 * 109.46792 * 55.57633 * 7 6 5 41 41 H 1.09002 * 109.47408 * 295.57709 * 7 6 5 42 42 H 1.09000 * 109.46799 * 60.00572 * 8 7 6 43 43 H 1.08993 * 109.47277 * 300.00601 * 8 7 6 44 44 H 0.97006 * 120.00082 * 0.02562 * 9 8 7 45 45 H 1.08995 * 109.47802 * 59.99812 * 12 10 9 46 46 H 1.09002 * 109.47133 * 299.99695 * 12 10 9 47 47 H 1.08003 * 120.02938 * 0.02562 * 15 14 13 48 48 H 1.07997 * 119.97383 * 179.97438 * 16 15 14 49 49 H 1.08995 * 109.47254 * 124.99874 * 18 17 16 50 50 H 0.96699 * 114.00462 * 59.99713 * 19 18 17 51 51 H 1.08007 * 119.97076 * 179.70734 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4841 -0.8783 1.5210 6 16 1.8563 -2.5802 1.5352 7 6 2.4436 -3.2185 3.1284 8 6 1.8966 -4.6309 3.3449 9 7 2.3715 -5.1466 4.6313 10 6 2.0140 -6.3815 5.0356 11 8 1.2995 -7.0662 4.3342 12 6 2.5019 -6.9118 6.3591 13 8 1.9911 -8.2311 6.5612 14 6 2.3399 -8.8575 7.7157 15 6 3.1573 -8.2161 8.6346 16 6 3.5109 -8.8553 9.8073 17 6 3.0512 -10.1335 10.0650 18 6 3.4389 -10.8286 11.3446 19 8 4.2438 -11.9699 11.0417 20 14 4.4060 -9.6548 12.4206 21 1 3.5697 -8.4688 12.7353 22 1 4.7875 -10.3396 13.6818 23 1 5.6310 -9.2202 11.7026 24 6 2.2413 -10.7774 9.1476 25 6 1.8803 -10.1404 7.9764 26 7 1.0080 -10.8278 6.9980 27 8 0.6045 -11.9539 7.2275 28 8 0.6937 -10.2674 5.9632 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0276 -0.0005 32 1 3.5740 1.7564 -0.0005 33 1 2.1207 2.2703 -0.8899 34 1 2.1207 2.2702 0.8901 35 1 2.1569 -1.9177 -1.4996 36 1 2.0853 -0.3902 -2.4106 37 1 3.5731 -0.8404 -1.5435 38 1 2.1348 -0.3548 2.4110 39 1 3.5740 -0.8931 1.5125 40 1 2.0965 -2.5674 3.9309 41 1 3.5333 -3.2468 3.1292 42 1 2.2438 -5.2818 2.5425 43 1 0.8071 -4.6026 3.3441 44 1 2.9432 -4.5992 5.1921 45 1 2.1546 -6.2612 7.1616 46 1 3.5916 -6.9397 6.3599 47 1 3.5170 -7.2177 8.4337 48 1 4.1476 -8.3565 10.5230 49 1 2.5398 -11.1476 11.8716 50 1 5.0623 -11.7605 10.5715 51 1 1.8873 -11.7777 9.3490 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310322_4549638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:07:51 Heat of formation + Delta-G solvation = -118.480691 kcal Electronic energy + Delta-G solvation = -31894.966231 eV Core-core repulsion = 27241.345370 eV Total energy + Delta-G solvation = -4653.620861 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 402.133 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.02729 -41.77552 -40.77651 -39.52620 -37.57995 -37.13029 -36.49661 -33.56319 -32.56705 -32.20254 -30.18132 -29.70734 -28.89608 -28.52419 -28.43362 -27.60909 -26.75021 -24.67332 -23.75805 -22.82215 -21.91940 -20.49914 -19.47921 -19.27894 -18.64633 -18.38527 -18.35174 -17.75815 -17.52144 -17.06686 -16.84679 -16.72291 -16.53650 -16.28975 -15.86687 -15.57672 -15.43138 -15.23585 -14.98685 -14.81403 -14.29102 -14.24400 -14.14805 -14.06557 -14.01263 -13.83220 -13.63423 -13.44198 -13.33880 -13.24122 -13.22405 -13.12852 -12.97646 -12.58843 -12.55980 -12.38959 -12.19787 -11.99118 -11.85195 -11.73124 -11.46614 -11.20579 -10.94904 -10.93698 -10.89459 -10.79450 -10.76282 -10.34882 -9.93691 -8.70034 -1.14804 -0.40131 0.31197 0.37056 0.52083 0.86514 1.10607 1.14657 1.22846 1.28160 1.36460 1.57723 1.66586 1.75495 1.88086 1.91128 2.24745 2.47112 2.95890 2.99581 3.17611 3.24760 3.34451 3.46680 3.53256 3.54245 3.57090 3.67828 3.68389 4.06344 4.11887 4.15635 4.17211 4.33208 4.40234 4.55185 4.56839 4.58488 4.60745 4.64570 4.70639 4.73473 4.73813 4.77486 4.81037 4.90877 5.06668 5.34510 5.41316 5.52133 5.55554 5.69126 6.14450 6.28267 6.93624 6.95793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.021 2.979 3 C -0.442 4.442 4 C -0.447 4.447 5 C -0.384 4.384 6 S -0.214 6.214 7 C -0.116 4.116 8 C 0.137 3.863 9 N -0.727 5.727 10 C 0.514 3.486 11 O -0.491 6.491 12 C 0.032 3.968 13 O -0.253 6.253 14 C 0.200 3.800 15 C -0.209 4.209 16 C -0.033 4.033 17 C -0.158 4.158 18 C -0.078 4.078 19 O -0.534 6.534 20 Si 0.948 3.052 21 H -0.247 1.247 22 H -0.245 1.245 23 H -0.249 1.249 24 C 0.013 3.987 25 C -0.075 4.075 26 N 0.028 4.972 27 O -0.175 6.175 28 O -0.118 6.118 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.402 0.598 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.156 0.844 48 H 0.143 0.857 49 H 0.126 0.874 50 H 0.378 0.622 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.059 9.385 5.112 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.216 2.784 3 C -0.551 4.551 4 C -0.555 4.555 5 C -0.577 4.577 6 S 0.012 5.988 7 C -0.264 4.264 8 C 0.013 3.987 9 N -0.383 5.383 10 C 0.297 3.703 11 O -0.363 6.363 12 C -0.047 4.047 13 O -0.162 6.162 14 C 0.150 3.850 15 C -0.228 4.228 16 C -0.051 4.051 17 C -0.159 4.159 18 C -0.189 4.189 19 O -0.339 6.339 20 Si 0.769 3.231 21 H -0.170 1.170 22 H -0.168 1.168 23 H -0.173 1.173 24 C -0.006 4.006 25 C -0.159 4.159 26 N 0.548 4.452 27 O -0.384 6.384 28 O -0.342 6.342 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.236 0.764 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.173 0.827 48 H 0.160 0.840 49 H 0.143 0.857 50 H 0.225 0.775 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.212 8.780 5.020 11.870 hybrid contribution 1.239 0.991 0.695 1.732 sum 7.451 9.772 5.716 13.553 Atomic orbital electron populations 1.26083 1.19875 1.05109 1.04386 0.78807 0.67794 0.67161 0.64670 1.26041 1.06286 1.17894 1.04887 1.26089 1.06165 1.08602 1.14681 1.28106 1.09081 1.00001 1.20471 1.86987 1.73812 1.13381 1.24664 1.23639 1.04048 0.99131 0.99559 1.21033 1.00395 0.92106 0.85118 1.45756 1.53876 1.16408 1.22292 1.19791 0.81628 0.81809 0.87079 1.90889 1.34404 1.56416 1.54579 1.22708 1.00584 0.83530 0.97836 1.86506 1.67576 1.28386 1.33755 1.18684 0.90819 0.89444 0.86031 1.21242 1.03497 1.02606 0.95463 1.21307 0.94774 0.93443 0.95606 1.20286 1.01496 0.95339 0.98783 1.25021 1.01178 0.95572 0.97095 1.86581 1.36490 1.30877 1.79909 0.85713 0.79620 0.77790 0.79962 1.17036 1.16843 1.17262 1.20854 0.91154 1.00416 0.88202 1.20602 1.06712 0.93370 0.95251 1.43336 0.99805 1.00715 1.01303 1.94558 1.57222 1.03803 1.82820 1.94704 1.59355 1.67213 1.12907 0.91264 0.91096 0.90468 0.91107 0.90576 0.91110 0.90545 0.91041 0.91253 0.88538 0.88591 0.89414 0.89415 0.89978 0.89892 0.76413 0.87992 0.87995 0.82697 0.83962 0.85663 0.77452 0.81596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.67 8.65 101.05 0.87 1.55 16 2 Si 1.02 -3.21 12.30 -169.99 -2.09 -5.30 16 3 C -0.44 1.20 8.65 101.05 0.87 2.08 16 4 C -0.45 0.67 8.65 101.05 0.87 1.54 16 5 C -0.38 1.03 5.14 101.05 0.52 1.55 16 6 S -0.21 0.13 20.84 -107.50 -2.24 -2.11 16 7 C -0.12 0.31 6.05 37.16 0.22 0.53 16 8 C 0.14 -0.14 5.68 -4.04 -0.02 -0.16 16 9 N -0.73 1.87 5.56 -60.30 -0.33 1.53 16 10 C 0.51 0.33 7.91 -10.99 -0.09 0.25 16 11 O -0.49 -3.19 16.50 -14.36 -0.24 -3.42 16 12 C 0.03 -0.08 5.22 36.01 0.19 0.11 16 13 O -0.25 -0.56 7.68 -49.77 -0.38 -0.94 16 14 C 0.20 0.15 6.67 -39.22 -0.26 -0.11 16 15 C -0.21 0.64 9.04 -39.43 -0.36 0.29 16 16 C -0.03 0.11 8.66 -39.60 -0.34 -0.23 16 17 C -0.16 0.33 5.35 -104.60 -0.56 -0.23 16 18 C -0.08 0.23 2.80 36.00 0.10 0.33 16 19 O -0.53 0.95 12.83 -35.23 -0.45 0.50 16 20 Si 0.95 -3.36 25.13 -169.99 -4.27 -7.64 16 21 H -0.25 0.81 7.11 56.52 0.40 1.21 16 22 H -0.25 0.38 7.11 56.52 0.40 0.78 16 23 H -0.25 0.98 7.04 56.52 0.40 1.37 16 24 C 0.01 0.00 9.18 -39.61 -0.36 -0.36 16 25 C -0.07 -0.20 6.87 -79.81 -0.55 -0.75 16 26 N 0.03 0.18 4.45 34.03 0.15 0.33 16 27 O -0.17 -1.25 18.45 -29.46 -0.54 -1.79 16 28 O -0.12 -1.02 17.24 -36.49 -0.63 -1.65 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 31 H 0.08 -0.04 7.96 -51.93 -0.41 -0.46 16 32 H 0.07 -0.20 7.96 -51.93 -0.41 -0.61 16 33 H 0.08 -0.19 7.96 -51.93 -0.41 -0.60 16 34 H 0.07 -0.20 7.96 -51.93 -0.41 -0.61 16 35 H 0.08 -0.04 7.96 -51.93 -0.41 -0.45 16 36 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 38 H 0.10 -0.33 7.96 -51.92 -0.41 -0.74 16 39 H 0.10 -0.32 7.96 -51.92 -0.41 -0.73 16 40 H 0.09 -0.33 8.14 -51.92 -0.42 -0.75 16 41 H 0.09 -0.32 8.14 -51.92 -0.42 -0.74 16 42 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 43 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 44 H 0.40 -2.54 8.47 -40.82 -0.35 -2.88 16 45 H 0.10 -0.60 7.66 -51.93 -0.40 -1.00 16 46 H 0.10 -0.60 7.66 -51.93 -0.40 -1.00 16 47 H 0.16 -1.04 6.30 -52.48 -0.33 -1.37 16 48 H 0.14 -0.80 4.86 -52.49 -0.25 -1.05 16 49 H 0.13 -0.46 7.96 -51.93 -0.41 -0.88 16 50 H 0.38 -1.94 8.70 45.56 0.40 -1.54 16 51 H 0.17 0.00 7.61 -52.48 -0.40 -0.39 16 LS Contribution 446.16 15.07 6.72 6.72 Total: 0.00 -12.30 446.16 -10.38 -22.68 By element: Atomic # 1 Polarization: -8.13 SS G_CDS: -7.18 Total: -15.31 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 1.11 Total: 6.39 kcal Atomic # 7 Polarization: 2.05 SS G_CDS: -0.18 Total: 1.87 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -2.24 Total: -7.31 kcal Atomic # 14 Polarization: -6.57 SS G_CDS: -6.36 Total: -12.94 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.24 Total: -2.11 kcal Total LS contribution 6.72 Total: 6.72 kcal Total: -12.30 -10.38 -22.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_4549638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.799 kcal (2) G-P(sol) polarization free energy of solvation -12.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds