Wall clock time and date at job start Tue Mar 9 2021 15:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47390 * 2 1 4 4 C 1.86301 * 109.47055 * 240.00343 * 2 1 3 5 5 C 1.86300 * 109.47401 * 120.00384 * 2 1 3 6 6 S 1.81401 * 109.46898 * 59.04667 * 5 2 1 7 7 C 1.81405 * 102.99789 * 184.42316 * 6 5 2 8 8 C 1.53001 * 109.47109 * 175.57473 * 7 6 5 9 9 N 1.46500 * 109.47032 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99965 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00084 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00002 * 180.02562 * 10 9 8 13 13 O 1.42907 * 109.47115 * 179.97438 * 12 10 9 14 14 C 1.35898 * 116.99950 * 179.97438 * 13 12 10 15 15 C 1.38714 * 120.05546 * 359.97438 * 14 13 12 16 16 C 1.38163 * 119.94352 * 180.02562 * 15 14 13 17 17 C 1.38249 * 120.05632 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.94661 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.47157 * 245.00271 * 18 17 16 20 20 Si 1.86305 * 109.47071 * 4.99762 * 18 17 16 21 21 H 1.48504 * 109.46583 * 60.00029 * 20 18 17 22 22 H 1.48494 * 109.47117 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47270 * 300.00219 * 20 18 17 24 24 C 1.38288 * 120.10720 * 0.27252 * 17 16 15 25 25 C 1.38122 * 120.05772 * 359.45110 * 24 17 16 26 26 N 1.48006 * 120.02819 * 180.29644 * 25 24 17 27 27 O 1.21805 * 120.00003 * 0.24926 * 26 25 24 28 28 O 1.21801 * 120.00175 * 180.24988 * 26 25 24 29 29 H 1.08999 * 109.46733 * 299.99472 * 1 2 3 30 30 H 1.08996 * 109.47032 * 59.99811 * 1 2 3 31 31 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47245 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47141 * 300.00645 * 3 2 1 34 34 H 1.09007 * 109.46593 * 60.00193 * 3 2 1 35 35 H 1.08998 * 109.47176 * 297.55553 * 4 2 1 36 36 H 1.08999 * 109.47205 * 57.55255 * 4 2 1 37 37 H 1.09001 * 109.47710 * 177.55581 * 4 2 1 38 38 H 1.09000 * 109.46988 * 299.04900 * 5 2 1 39 39 H 1.09003 * 109.47032 * 179.04700 * 5 2 1 40 40 H 1.09006 * 109.46792 * 55.57633 * 7 6 5 41 41 H 1.09002 * 109.47408 * 295.57709 * 7 6 5 42 42 H 1.09000 * 109.46799 * 60.00572 * 8 7 6 43 43 H 1.08993 * 109.47277 * 300.00601 * 8 7 6 44 44 H 0.97006 * 120.00082 * 0.02562 * 9 8 7 45 45 H 1.08995 * 109.47802 * 59.99812 * 12 10 9 46 46 H 1.09002 * 109.47133 * 299.99695 * 12 10 9 47 47 H 1.08003 * 120.02938 * 0.02562 * 15 14 13 48 48 H 1.07997 * 119.97383 * 179.97438 * 16 15 14 49 49 H 1.08995 * 109.47254 * 124.99874 * 18 17 16 50 50 H 0.96699 * 114.00462 * 59.99713 * 19 18 17 51 51 H 1.08007 * 119.97076 * 179.70734 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4841 -0.8783 1.5210 6 16 1.8563 -2.5802 1.5352 7 6 2.4436 -3.2185 3.1284 8 6 1.8966 -4.6309 3.3449 9 7 2.3715 -5.1466 4.6313 10 6 2.0140 -6.3815 5.0356 11 8 1.2995 -7.0662 4.3342 12 6 2.5019 -6.9118 6.3591 13 8 1.9911 -8.2311 6.5612 14 6 2.3399 -8.8575 7.7157 15 6 3.1573 -8.2161 8.6346 16 6 3.5109 -8.8553 9.8073 17 6 3.0512 -10.1335 10.0650 18 6 3.4389 -10.8286 11.3446 19 8 4.2438 -11.9699 11.0417 20 14 4.4060 -9.6548 12.4206 21 1 3.5697 -8.4688 12.7353 22 1 4.7875 -10.3396 13.6818 23 1 5.6310 -9.2202 11.7026 24 6 2.2413 -10.7774 9.1476 25 6 1.8803 -10.1404 7.9764 26 7 1.0080 -10.8278 6.9980 27 8 0.6045 -11.9539 7.2275 28 8 0.6937 -10.2674 5.9632 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0276 -0.0005 32 1 3.5740 1.7564 -0.0005 33 1 2.1207 2.2703 -0.8899 34 1 2.1207 2.2702 0.8901 35 1 2.1569 -1.9177 -1.4996 36 1 2.0853 -0.3902 -2.4106 37 1 3.5731 -0.8404 -1.5435 38 1 2.1348 -0.3548 2.4110 39 1 3.5740 -0.8931 1.5125 40 1 2.0965 -2.5674 3.9309 41 1 3.5333 -3.2468 3.1292 42 1 2.2438 -5.2818 2.5425 43 1 0.8071 -4.6026 3.3441 44 1 2.9432 -4.5992 5.1921 45 1 2.1546 -6.2612 7.1616 46 1 3.5916 -6.9397 6.3599 47 1 3.5170 -7.2177 8.4337 48 1 4.1476 -8.3565 10.5230 49 1 2.5398 -11.1476 11.8716 50 1 5.0623 -11.7605 10.5715 51 1 1.8873 -11.7777 9.3490 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310322_4549638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:07:50 Heat of formation + Delta-G solvation = -118.227038 kcal Electronic energy + Delta-G solvation = -31894.955232 eV Core-core repulsion = 27241.345370 eV Total energy + Delta-G solvation = -4653.609862 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 402.133 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.30021 -41.80471 -40.77700 -39.45034 -37.59404 -37.38988 -36.52669 -33.53174 -32.46970 -32.08287 -29.98831 -29.52890 -28.68934 -28.32215 -28.30808 -27.83353 -26.57114 -24.57780 -23.72841 -22.81887 -21.88927 -20.54655 -19.79010 -19.24089 -18.64454 -18.63595 -18.22413 -17.69665 -17.47119 -16.96112 -16.77278 -16.62853 -16.31346 -16.08935 -15.71940 -15.38692 -15.36267 -15.09988 -14.82684 -14.61925 -14.11428 -14.09318 -13.98223 -13.94695 -13.83542 -13.64223 -13.50479 -13.30290 -13.23603 -13.13106 -13.08592 -12.98671 -12.86143 -12.70798 -12.39733 -12.31069 -12.27380 -12.20452 -12.08430 -11.72907 -11.31032 -11.21253 -10.85574 -10.79155 -10.74534 -10.62718 -10.52289 -10.33501 -9.81804 -8.62703 -1.33021 -0.26064 0.13753 0.33489 0.48040 1.14371 1.25115 1.38717 1.47600 1.49678 1.54893 1.79185 1.93712 1.98627 2.01658 2.12348 2.37391 2.65466 3.10685 3.20933 3.38513 3.52478 3.57918 3.64460 3.68104 3.77301 3.84121 3.88571 3.97407 4.28023 4.34504 4.35230 4.38117 4.55965 4.61404 4.64424 4.77893 4.78509 4.80202 4.81598 4.82282 4.86092 4.86498 4.87269 4.95105 5.06081 5.15324 5.19059 5.57020 5.65755 5.66633 5.71997 6.35189 6.41494 6.68333 7.07039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.083 2.917 3 C -0.447 4.447 4 C -0.466 4.466 5 C -0.377 4.377 6 S -0.277 6.277 7 C -0.096 4.096 8 C 0.139 3.861 9 N -0.704 5.704 10 C 0.507 3.493 11 O -0.565 6.565 12 C 0.027 3.973 13 O -0.292 6.292 14 C 0.193 3.807 15 C -0.189 4.189 16 C -0.018 4.018 17 C -0.149 4.149 18 C -0.087 4.087 19 O -0.555 6.555 20 Si 0.986 3.014 21 H -0.241 1.241 22 H -0.280 1.280 23 H -0.230 1.230 24 C 0.002 3.998 25 C -0.103 4.103 26 N 0.034 4.966 27 O -0.196 6.196 28 O -0.178 6.178 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.425 0.575 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.204 0.796 48 H 0.178 0.822 49 H 0.125 0.875 50 H 0.392 0.608 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.275 12.699 8.060 18.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.273 2.727 3 C -0.557 4.557 4 C -0.572 4.572 5 C -0.569 4.569 6 S -0.052 6.052 7 C -0.244 4.244 8 C 0.014 3.986 9 N -0.361 5.361 10 C 0.293 3.707 11 O -0.443 6.443 12 C -0.050 4.050 13 O -0.202 6.202 14 C 0.143 3.857 15 C -0.208 4.208 16 C -0.035 4.035 17 C -0.151 4.151 18 C -0.196 4.196 19 O -0.362 6.362 20 Si 0.806 3.194 21 H -0.164 1.164 22 H -0.205 1.205 23 H -0.153 1.153 24 C -0.017 4.017 25 C -0.189 4.189 26 N 0.544 4.456 27 O -0.405 6.405 28 O -0.391 6.391 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.263 0.737 45 H 0.163 0.837 46 H 0.164 0.836 47 H 0.221 0.779 48 H 0.195 0.805 49 H 0.143 0.857 50 H 0.241 0.759 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.429 12.159 7.886 17.290 hybrid contribution 0.309 -0.033 -0.107 0.329 sum 9.738 12.126 7.779 17.389 Atomic orbital electron populations 1.26333 1.22240 1.04145 1.04390 0.77845 0.65359 0.66322 0.63129 1.26088 1.06704 1.17775 1.05092 1.26342 1.06487 1.08133 1.16245 1.28186 1.09826 0.97711 1.21214 1.87315 1.74815 1.16072 1.26991 1.23548 1.04803 0.97685 0.98369 1.20863 0.99284 0.93060 0.85355 1.45551 1.53103 1.15720 1.21734 1.20564 0.80433 0.81863 0.87857 1.90869 1.37908 1.58503 1.56979 1.23098 1.02916 0.82278 0.96692 1.86474 1.68542 1.30562 1.34656 1.18944 0.91414 0.88773 0.86565 1.21761 1.01114 1.04003 0.93875 1.21740 0.93594 0.92409 0.95790 1.20471 1.00382 0.96002 0.98245 1.25294 1.01673 0.95807 0.96808 1.86554 1.37470 1.31936 1.80234 0.85207 0.79649 0.76694 0.77803 1.16441 1.20532 1.15262 1.20893 0.92231 1.00409 0.88181 1.20897 1.07928 0.94808 0.95245 1.43896 0.99651 1.00427 1.01577 1.94501 1.58063 1.04979 1.82964 1.94690 1.61765 1.67550 1.15082 0.91016 0.91345 0.91900 0.90557 0.90796 0.90540 0.91958 0.91314 0.90998 0.87130 0.87324 0.87516 0.87633 0.92182 0.92033 0.73661 0.83663 0.83642 0.77879 0.80543 0.85682 0.75893 0.82586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.99 8.65 113.37 0.98 1.97 16 2 Si 1.08 -7.03 12.30 68.60 0.84 -6.18 16 3 C -0.45 2.98 8.65 113.37 0.98 3.96 16 4 C -0.47 0.98 8.65 113.37 0.98 1.96 16 5 C -0.38 2.48 5.14 113.37 0.58 3.06 16 6 S -0.28 0.19 20.84 -56.49 -1.18 -0.99 16 7 C -0.10 0.61 6.05 71.98 0.44 1.04 16 8 C 0.14 -0.16 5.68 86.38 0.49 0.33 16 9 N -0.70 4.27 5.56 -463.07 -2.57 1.70 16 10 C 0.51 0.78 7.91 87.66 0.69 1.47 16 11 O -0.57 -9.11 16.50 15.99 0.26 -8.85 16 12 C 0.03 -0.20 5.22 71.24 0.37 0.17 16 13 O -0.29 -1.38 7.68 -63.38 -0.49 -1.87 16 14 C 0.19 0.14 6.67 22.51 0.15 0.29 16 15 C -0.19 1.94 9.04 22.37 0.20 2.14 16 16 C -0.02 0.19 8.66 22.25 0.19 0.39 16 17 C -0.15 0.86 5.35 -19.85 -0.11 0.76 16 18 C -0.09 0.63 2.80 71.23 0.20 0.83 16 19 O -0.55 2.26 12.83 -148.98 -1.91 0.35 16 20 Si 0.99 -9.74 25.13 68.60 1.72 -8.01 16 21 H -0.24 2.53 7.11 99.48 0.71 3.24 16 22 H -0.28 1.08 7.11 99.48 0.71 1.78 16 23 H -0.23 2.91 7.04 99.48 0.70 3.61 16 24 C 0.00 0.00 9.18 22.25 0.20 0.21 16 25 C -0.10 -0.72 6.87 36.47 0.25 -0.46 16 26 N 0.03 0.57 4.45 -46.25 -0.21 0.37 16 27 O -0.20 -3.59 18.45 18.88 0.35 -3.24 16 28 O -0.18 -3.94 17.24 25.61 0.44 -3.50 16 29 H 0.07 -0.21 7.96 -2.39 -0.02 -0.22 16 30 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 31 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 32 H 0.08 -0.56 7.96 -2.39 -0.02 -0.58 16 33 H 0.07 -0.43 7.96 -2.39 -0.02 -0.44 16 34 H 0.08 -0.56 7.96 -2.38 -0.02 -0.58 16 35 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 36 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 37 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 38 H 0.11 -1.00 7.96 -2.39 -0.02 -1.02 16 39 H 0.11 -0.95 7.96 -2.39 -0.02 -0.97 16 40 H 0.11 -1.04 8.14 -2.39 -0.02 -1.06 16 41 H 0.11 -1.00 8.14 -2.39 -0.02 -1.02 16 42 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.42 -6.66 8.47 -92.70 -0.79 -7.45 16 45 H 0.15 -2.37 7.66 -2.39 -0.02 -2.39 16 46 H 0.15 -2.38 7.66 -2.39 -0.02 -2.40 16 47 H 0.20 -4.14 6.30 -2.91 -0.02 -4.16 16 48 H 0.18 -3.05 4.86 -2.91 -0.01 -3.06 16 49 H 0.13 -0.96 7.96 -2.39 -0.02 -0.98 16 50 H 0.39 -4.43 8.70 -74.06 -0.64 -5.08 16 51 H 0.16 0.39 7.61 -2.91 -0.02 0.37 16 Total: 0.00 -38.77 446.16 4.16 -34.60 By element: Atomic # 1 Polarization: -22.78 SS G_CDS: 0.29 Total: -22.49 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 6.61 Total: 18.12 kcal Atomic # 7 Polarization: 4.84 SS G_CDS: -2.78 Total: 2.06 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -1.34 Total: -17.11 kcal Atomic # 14 Polarization: -16.77 SS G_CDS: 2.57 Total: -14.20 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -1.18 Total: -0.99 kcal Total: -38.77 4.16 -34.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_4549638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.623 kcal (2) G-P(sol) polarization free energy of solvation -38.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds