Wall clock time and date at job start Tue Mar 9 2021 15:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86302 * 109.46929 * 2 1 4 4 C 1.86301 * 109.47149 * 240.00392 * 2 1 3 5 5 C 1.86295 * 109.47323 * 120.00078 * 2 1 3 6 6 S 1.81396 * 109.47039 * 59.04865 * 5 2 1 7 7 C 1.81406 * 102.99982 * 184.42421 * 6 5 2 8 8 C 1.53002 * 109.47046 * 175.57624 * 7 6 5 9 9 N 1.46501 * 109.46970 * 179.97438 * 8 7 6 10 10 C 1.34772 * 119.99982 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00171 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00012 * 180.27642 * 10 9 8 13 13 O 1.42902 * 109.47235 * 179.72742 * 12 10 9 14 14 C 1.35900 * 117.00174 * 179.97438 * 13 12 10 15 15 C 1.38711 * 120.05489 * 359.73179 * 14 13 12 16 16 C 1.38163 * 119.94379 * 179.72062 * 15 14 13 17 17 C 1.38245 * 120.05552 * 0.56828 * 16 15 14 18 18 C 1.38292 * 120.11037 * 359.68273 * 17 16 15 19 19 C 1.50700 * 119.97348 * 180.02562 * 18 17 16 20 20 O 1.42901 * 109.47219 * 245.02172 * 19 18 17 21 21 Si 1.86304 * 109.46954 * 5.02388 * 19 18 17 22 22 H 1.48498 * 109.47346 * 59.99602 * 21 19 18 23 23 H 1.48497 * 109.47074 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46900 * 299.99879 * 21 19 18 25 25 C 1.38129 * 120.05513 * 0.04416 * 18 17 16 26 26 H 1.08999 * 109.47320 * 299.99987 * 1 2 3 27 27 H 1.08994 * 109.47099 * 59.99976 * 1 2 3 28 28 H 1.09005 * 109.47174 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47502 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47468 * 300.00425 * 3 2 1 31 31 H 1.08999 * 109.47109 * 59.99883 * 3 2 1 32 32 H 1.09001 * 109.46819 * 297.55181 * 4 2 1 33 33 H 1.08992 * 109.47386 * 57.55434 * 4 2 1 34 34 H 1.08997 * 109.47225 * 177.55646 * 4 2 1 35 35 H 1.09007 * 109.46846 * 299.05046 * 5 2 1 36 36 H 1.08995 * 109.47221 * 179.04966 * 5 2 1 37 37 H 1.08998 * 109.46861 * 55.57507 * 7 6 5 38 38 H 1.08997 * 109.47220 * 295.57873 * 7 6 5 39 39 H 1.08999 * 109.46944 * 59.99905 * 8 7 6 40 40 H 1.08997 * 109.47314 * 300.00191 * 8 7 6 41 41 H 0.97000 * 120.00157 * 0.02562 * 9 8 7 42 42 H 1.08999 * 109.47216 * 299.72440 * 12 10 9 43 43 H 1.08999 * 109.47142 * 59.72666 * 12 10 9 44 44 H 1.08000 * 120.02428 * 359.97438 * 15 14 13 45 45 H 1.07998 * 119.97113 * 180.26830 * 16 15 14 46 46 H 1.07993 * 119.94693 * 179.70173 * 17 16 15 47 47 H 1.08998 * 109.46833 * 125.02015 * 19 18 17 48 48 H 0.96696 * 113.99589 * 60.00240 * 20 19 18 49 49 H 1.08000 * 120.02743 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4840 -0.8782 1.5211 6 16 1.8563 -2.5800 1.5353 7 6 2.4436 -3.2183 3.1286 8 6 1.8967 -4.6307 3.3451 9 7 2.3714 -5.1464 4.6315 10 6 2.0131 -6.3809 5.0363 11 8 1.2980 -7.0652 4.3354 12 6 2.4964 -6.9089 6.3624 13 8 1.9810 -8.2259 6.5672 14 6 2.3251 -8.8502 7.7243 15 6 3.1466 -8.2107 8.6409 16 6 3.4904 -8.8453 9.8191 17 6 3.0260 -10.1211 10.0794 18 6 2.2111 -10.7628 9.1648 19 6 1.7061 -12.1534 9.4520 20 8 2.2545 -13.0657 8.4986 21 14 2.2260 -12.6608 11.1675 22 1 1.6562 -11.7127 12.1583 23 1 1.7279 -14.0308 11.4508 24 1 3.7080 -12.6432 11.2611 25 6 1.8599 -10.1305 7.9880 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.5739 1.7566 -0.0005 30 1 2.1206 2.2704 -0.8900 31 1 2.1206 2.2703 0.8900 32 1 2.1569 -1.9177 -1.4995 33 1 2.0854 -0.3902 -2.4106 34 1 3.5731 -0.8403 -1.5434 35 1 2.1347 -0.3546 2.4110 36 1 3.5739 -0.8930 1.5126 37 1 2.0965 -2.5673 3.9309 38 1 3.5332 -3.2465 3.1294 39 1 2.2438 -5.2816 2.5427 40 1 0.8070 -4.6025 3.3443 41 1 2.9431 -4.5990 5.1923 42 1 3.5859 -6.9407 6.3656 43 1 2.1497 -6.2546 7.1622 44 1 3.5138 -7.2160 8.4357 45 1 4.1264 -8.3460 10.5351 46 1 3.2997 -10.6173 10.9987 47 1 0.6184 -12.1662 9.3833 48 1 3.2206 -13.1063 8.5037 49 1 1.2232 -10.6320 7.2742 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310322_4860298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:08:26 Heat of formation + Delta-G solvation = -126.113608 kcal Electronic energy + Delta-G solvation = -25425.047734 eV Core-core repulsion = 21602.112321 eV Total energy + Delta-G solvation = -3822.935414 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 357.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55329 -40.56932 -38.98043 -37.24701 -36.44501 -32.59357 -32.41358 -31.41556 -30.15341 -29.21011 -28.79743 -28.51117 -28.42728 -26.80881 -24.30681 -23.72850 -22.57341 -21.62858 -19.36334 -18.63014 -17.90013 -17.60372 -17.47007 -17.18685 -16.81225 -16.62585 -16.58669 -16.14876 -15.59009 -15.28336 -15.12507 -14.99322 -14.89244 -14.73831 -14.46731 -14.27916 -14.11231 -14.00180 -13.85865 -13.61886 -13.57116 -13.41745 -13.23356 -13.22209 -13.12033 -13.03912 -12.89652 -12.58694 -12.24409 -12.13373 -11.97287 -11.55788 -11.45370 -11.15928 -10.89845 -10.88600 -10.77135 -10.47165 -10.30671 -9.95382 -9.29280 -8.68510 0.17311 0.35205 0.37366 1.11911 1.27323 1.42559 1.43909 1.47480 1.51831 1.61813 1.76470 1.89718 1.91812 2.47970 2.56805 2.64118 3.38479 3.47205 3.54916 3.62706 3.69203 3.72892 3.84438 3.84842 3.96840 4.08151 4.14564 4.20204 4.34504 4.52338 4.56790 4.59176 4.59691 4.61954 4.63932 4.73123 4.74189 4.74532 4.78047 4.81790 4.94542 5.12103 5.20647 5.31868 5.35594 5.40542 5.52697 5.56089 5.61778 6.16027 6.32634 6.54934 7.01789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.021 2.979 3 C -0.442 4.442 4 C -0.447 4.447 5 C -0.384 4.384 6 S -0.215 6.215 7 C -0.115 4.115 8 C 0.137 3.863 9 N -0.727 5.727 10 C 0.516 3.484 11 O -0.507 6.507 12 C 0.042 3.958 13 O -0.288 6.288 14 C 0.129 3.871 15 C -0.206 4.206 16 C -0.072 4.072 17 C -0.163 4.163 18 C -0.080 4.080 19 C -0.083 4.083 20 O -0.536 6.536 21 Si 0.956 3.044 22 H -0.250 1.250 23 H -0.254 1.254 24 H -0.252 1.252 25 C -0.117 4.117 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.402 0.598 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.377 0.623 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.416 6.189 3.096 8.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.216 2.784 3 C -0.551 4.551 4 C -0.555 4.555 5 C -0.576 4.576 6 S 0.010 5.990 7 C -0.264 4.264 8 C 0.013 3.987 9 N -0.383 5.383 10 C 0.300 3.700 11 O -0.380 6.380 12 C -0.037 4.037 13 O -0.200 6.200 14 C 0.084 3.916 15 C -0.225 4.225 16 C -0.090 4.090 17 C -0.180 4.180 18 C -0.080 4.080 19 C -0.194 4.194 20 O -0.341 6.341 21 Si 0.778 3.222 22 H -0.174 1.174 23 H -0.178 1.178 24 H -0.176 1.176 25 C -0.136 4.136 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.237 0.763 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.224 0.776 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.801 4.701 2.391 5.972 hybrid contribution 1.777 1.521 1.210 2.633 sum 4.578 6.222 3.602 8.523 Atomic orbital electron populations 1.26083 1.19885 1.05091 1.04383 0.78806 0.67784 0.67172 0.64674 1.26041 1.06296 1.17882 1.04885 1.26086 1.06176 1.08587 1.14675 1.28105 1.09097 0.99970 1.20471 1.86954 1.73849 1.13426 1.24762 1.23640 1.04080 0.99144 0.99486 1.21020 1.00304 0.92106 0.85263 1.45784 1.53782 1.16566 1.22182 1.20023 0.81091 0.81540 0.87310 1.90810 1.35181 1.56792 1.55262 1.22438 1.00135 0.84661 0.96455 1.86177 1.69522 1.28071 1.36217 1.19050 0.94687 0.92596 0.85304 1.21286 1.03270 1.01617 0.96338 1.20879 0.97914 0.94238 0.96003 1.20994 1.00714 0.96423 0.99917 1.20131 0.97210 0.96585 0.94103 1.25061 1.03036 0.86667 1.04608 1.86544 1.25794 1.61801 1.59931 0.85603 0.80805 0.80947 0.74823 1.17367 1.17767 1.17550 1.20284 1.02898 0.92237 0.98136 0.91260 0.91102 0.90486 0.91098 0.90586 0.91102 0.90560 0.91050 0.91245 0.88525 0.88579 0.89385 0.89384 0.90091 0.90008 0.76324 0.88700 0.88689 0.85257 0.85192 0.85920 0.86170 0.77614 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.62 8.65 101.05 0.87 1.50 16 2 Si 1.02 -3.05 12.30 -169.99 -2.09 -5.14 16 3 C -0.44 1.14 8.65 101.05 0.87 2.01 16 4 C -0.45 0.62 8.65 101.05 0.87 1.49 16 5 C -0.38 0.93 5.14 101.05 0.52 1.45 16 6 S -0.22 0.07 20.84 -107.50 -2.24 -2.17 16 7 C -0.12 0.25 6.05 37.16 0.22 0.48 16 8 C 0.14 -0.07 5.68 -4.04 -0.02 -0.09 16 9 N -0.73 1.22 5.56 -60.29 -0.33 0.89 16 10 C 0.52 0.81 7.91 -10.99 -0.09 0.72 16 11 O -0.51 -3.50 16.50 -14.35 -0.24 -3.74 16 12 C 0.04 -0.04 5.22 36.01 0.19 0.15 16 13 O -0.29 -0.90 9.67 -39.34 -0.38 -1.28 16 14 C 0.13 0.26 6.69 -39.22 -0.26 0.00 16 15 C -0.21 0.04 9.04 -39.43 -0.36 -0.32 16 16 C -0.07 0.03 10.04 -39.61 -0.40 -0.36 16 17 C -0.16 -0.03 8.67 -39.56 -0.34 -0.37 16 18 C -0.08 -0.08 5.35 -104.64 -0.56 -0.64 16 19 C -0.08 0.00 2.80 36.01 0.10 0.10 16 20 O -0.54 -0.48 12.83 -35.23 -0.45 -0.94 16 21 Si 0.96 -0.57 25.14 -169.99 -4.27 -4.84 16 22 H -0.25 0.02 7.11 56.52 0.40 0.42 16 23 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 24 H -0.25 0.16 7.04 56.52 0.40 0.56 16 25 C -0.12 -0.27 9.62 -39.43 -0.38 -0.65 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 28 H 0.08 -0.03 7.96 -51.93 -0.41 -0.45 16 29 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 30 H 0.08 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 32 H 0.08 -0.03 7.96 -51.93 -0.41 -0.45 16 33 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 35 H 0.10 -0.30 7.96 -51.92 -0.41 -0.72 16 36 H 0.10 -0.29 7.96 -51.93 -0.41 -0.70 16 37 H 0.09 -0.28 8.14 -51.92 -0.42 -0.70 16 38 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 39 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.40 -2.10 8.47 -40.82 -0.35 -2.45 16 42 H 0.10 -0.33 7.65 -51.93 -0.40 -0.73 16 43 H 0.10 -0.34 7.68 -51.93 -0.40 -0.74 16 44 H 0.13 -0.38 6.30 -52.49 -0.33 -0.71 16 45 H 0.13 -0.36 8.06 -52.49 -0.42 -0.78 16 46 H 0.12 -0.14 4.86 -52.49 -0.25 -0.39 16 47 H 0.12 -0.08 7.96 -51.93 -0.41 -0.49 16 48 H 0.38 -0.91 8.70 45.56 0.40 -0.51 16 49 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 LS Contribution 420.15 15.07 6.33 6.33 Total: 0.00 -9.32 420.15 -10.06 -19.38 By element: Atomic # 1 Polarization: -6.35 SS G_CDS: -7.63 Total: -13.98 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 1.25 Total: 5.48 kcal Atomic # 7 Polarization: 1.22 SS G_CDS: -0.33 Total: 0.89 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -1.07 Total: -5.95 kcal Atomic # 14 Polarization: -3.62 SS G_CDS: -6.36 Total: -9.98 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -2.24 Total: -2.17 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -9.32 -10.06 -19.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_4860298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.733 kcal (2) G-P(sol) polarization free energy of solvation -9.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds