Wall clock time and date at job start Tue Mar 9 2021 15:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37637 * 125.67836 * 2 1 4 4 C 1.46675 * 126.22294 * 0.02868 * 3 2 1 5 5 O 1.21695 * 120.00292 * 4.62000 * 4 3 2 6 6 N 1.34778 * 120.00071 * 184.61878 * 4 3 2 7 7 C 1.46500 * 120.00177 * 175.34355 * 6 4 3 8 8 C 1.52998 * 109.47066 * 180.27514 * 7 6 4 9 9 S 1.81405 * 109.46853 * 180.02562 * 8 7 6 10 10 C 1.81405 * 102.99741 * 185.08204 * 9 8 7 11 11 Si 1.86300 * 109.47099 * 79.61872 * 10 9 8 12 12 C 1.86301 * 109.46956 * 54.52580 * 11 10 9 13 13 C 1.86290 * 109.47089 * 174.52797 * 11 10 9 14 14 C 1.86303 * 109.46940 * 294.52835 * 11 10 9 15 15 C 1.37886 * 107.55180 * 179.76130 * 3 2 1 16 16 C 1.39873 * 107.09081 * 0.24156 * 15 3 2 17 17 Br 1.89103 * 126.07452 * 179.97438 * 16 15 3 18 18 C 1.35510 * 107.85249 * 0.02562 * 16 15 3 19 19 C 1.50704 * 125.56995 * 179.97438 * 18 16 15 20 20 O 1.42900 * 109.47187 * 304.44388 * 19 18 16 21 21 Si 1.86305 * 109.46802 * 64.43918 * 19 18 16 22 22 H 1.48503 * 109.47046 * 64.92335 * 21 19 18 23 23 H 1.48507 * 109.46704 * 184.91902 * 21 19 18 24 24 H 1.48497 * 109.47268 * 304.91787 * 21 19 18 25 25 H 1.08997 * 109.47160 * 94.15841 * 1 2 3 26 26 H 1.09003 * 109.46866 * 214.16232 * 1 2 3 27 27 H 1.08999 * 109.47010 * 334.15613 * 1 2 3 28 28 H 0.97004 * 119.99468 * 355.62650 * 6 4 3 29 29 H 1.08995 * 109.47555 * 300.28328 * 7 6 4 30 30 H 1.09006 * 109.46530 * 60.28176 * 7 6 4 31 31 H 1.08995 * 109.47598 * 300.00788 * 8 7 6 32 32 H 1.09006 * 109.46906 * 60.00892 * 8 7 6 33 33 H 1.08997 * 109.46951 * 199.61777 * 10 9 8 34 34 H 1.08998 * 109.46921 * 319.61949 * 10 9 8 35 35 H 1.08995 * 109.47144 * 60.00599 * 12 11 10 36 36 H 1.09005 * 109.46732 * 179.97438 * 12 11 10 37 37 H 1.08995 * 109.47665 * 299.99916 * 12 11 10 38 38 H 1.09006 * 109.47484 * 60.00216 * 13 11 10 39 39 H 1.09005 * 109.47281 * 179.97438 * 13 11 10 40 40 H 1.08995 * 109.47439 * 299.99663 * 13 11 10 41 41 H 1.09003 * 109.47023 * 67.21727 * 14 11 10 42 42 H 1.09005 * 109.46932 * 187.20995 * 14 11 10 43 43 H 1.08996 * 109.47063 * 307.21441 * 14 11 10 44 44 H 1.07997 * 126.45560 * 180.28012 * 15 3 2 45 45 H 1.08998 * 109.46802 * 184.44036 * 19 18 16 46 46 H 0.96691 * 114.00522 * 59.99666 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1180 0.0000 4 6 1.8121 2.5122 0.0006 5 8 0.6246 2.7643 0.0860 6 7 2.7086 3.5142 -0.0935 7 6 2.2487 4.9014 -0.1957 8 6 3.4578 5.8334 -0.2963 9 16 2.8883 7.5512 -0.4222 10 6 4.4281 8.4732 -0.6861 11 14 4.9374 8.3330 -2.4727 12 6 3.5318 8.8842 -3.5642 13 6 6.4236 9.4129 -2.7813 14 6 5.3658 6.5616 -2.8590 15 6 3.5782 0.6891 0.0055 16 6 3.5529 -0.7095 0.0032 17 35 5.0610 -1.8504 0.0078 18 6 2.2558 -1.1015 -0.0041 19 6 1.7713 -2.5285 -0.0094 20 8 2.3453 -3.2224 -1.1190 21 14 2.2814 -3.3633 1.5761 22 1 1.5907 -2.7164 2.7206 23 1 1.9091 -4.7999 1.5211 24 1 3.7509 -3.2391 1.7504 25 1 -0.3633 -0.0745 -1.0249 26 1 -0.3633 -0.8504 0.5771 27 1 -0.3633 0.9249 0.4480 28 1 3.6582 3.3165 -0.0976 29 1 1.6281 5.0139 -1.0847 30 1 1.6656 5.1569 0.6891 31 1 4.0784 5.7209 0.5926 32 1 4.0409 5.5779 -1.1812 33 1 4.2712 9.5220 -0.4343 34 1 5.2121 8.0604 -0.0513 35 1 3.2812 9.9206 -3.3382 36 1 3.8300 8.8026 -4.6094 37 1 2.6622 8.2524 -3.3837 38 1 7.2461 9.0904 -2.1427 39 1 6.7219 9.3305 -3.8265 40 1 6.1730 10.4493 -2.5553 41 1 4.4657 5.9494 -2.8026 42 1 5.7847 6.4999 -3.8635 43 1 6.0976 6.1990 -2.1372 44 1 4.4583 1.3149 0.0112 45 1 0.6848 -2.5430 -0.0945 46 1 3.3118 -3.2492 -1.1088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310322_5000100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:11:32 Heat of formation + Delta-G solvation = -56.302335 kcal Electronic energy + Delta-G solvation = -25710.275615 eV Core-core repulsion = 21932.031864 eV Total energy + Delta-G solvation = -3778.243751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 408.045 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.89310 -40.45712 -37.95009 -36.64713 -34.52121 -32.82131 -31.58956 -30.86455 -29.95725 -28.69938 -28.38942 -28.28713 -27.39937 -27.03273 -24.29203 -23.17517 -21.54018 -20.64885 -19.12845 -18.38137 -17.59229 -17.27139 -16.90719 -16.79786 -16.41156 -16.10416 -15.64583 -15.36146 -14.98991 -14.85115 -14.74982 -14.44253 -14.41776 -14.27887 -14.11024 -13.99740 -13.88564 -13.72580 -13.49787 -13.21609 -13.18686 -13.14389 -13.03568 -12.87474 -12.80374 -12.70277 -12.56867 -12.27097 -11.74536 -11.64902 -11.30901 -10.94854 -10.91169 -10.77725 -10.74252 -10.56969 -10.36148 -9.82618 -9.30936 -8.46342 0.09877 0.46756 0.53218 0.83314 1.13607 1.41375 1.45612 1.53146 1.62700 1.69206 1.92102 1.96973 2.10272 2.13628 2.32720 2.68133 3.16537 3.42583 3.51129 3.62811 3.71105 3.86341 3.88203 4.20872 4.32330 4.33639 4.36006 4.37582 4.61464 4.63599 4.65120 4.75812 4.80560 4.82160 4.83328 4.86026 4.90521 4.91273 4.98475 5.15161 5.28173 5.55805 5.57843 5.65412 5.69636 5.77419 6.30468 6.31342 6.96443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.394 5.394 3 C -0.054 4.054 4 C 0.592 3.408 5 O -0.574 6.574 6 N -0.700 5.700 7 C 0.142 3.858 8 C -0.111 4.111 9 S -0.270 6.270 10 C -0.382 4.382 11 Si 1.068 2.932 12 C -0.466 4.466 13 C -0.458 4.458 14 C -0.463 4.463 15 C -0.095 4.095 16 C -0.192 4.192 17 Br -0.011 7.011 18 C 0.052 3.948 19 C -0.067 4.067 20 O -0.539 6.539 21 Si 0.949 3.051 22 H -0.257 1.257 23 H -0.247 1.247 24 H -0.215 1.215 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.419 0.581 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.184 0.816 45 H 0.136 0.864 46 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.862 0.433 0.230 4.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.067 5.067 3 C -0.168 4.168 4 C 0.380 3.620 5 O -0.455 6.455 6 N -0.353 5.353 7 C 0.018 3.982 8 C -0.259 4.259 9 S -0.045 6.045 10 C -0.576 4.576 11 Si 1.260 2.740 12 C -0.572 4.572 13 C -0.566 4.566 14 C -0.570 4.570 15 C -0.122 4.122 16 C -0.278 4.278 17 Br 0.073 6.927 18 C -0.070 4.070 19 C -0.177 4.177 20 O -0.347 6.347 21 Si 0.766 3.234 22 H -0.181 1.181 23 H -0.170 1.170 24 H -0.136 1.136 25 H 0.108 0.892 26 H 0.129 0.871 27 H 0.120 0.880 28 H 0.257 0.743 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.201 0.799 45 H 0.154 0.846 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 2.758 0.192 0.991 2.936 hybrid contribution 1.337 0.333 -0.361 1.424 sum 4.094 0.525 0.629 4.176 Atomic orbital electron populations 1.22636 0.74229 1.06800 1.05335 1.43952 1.07839 1.03887 1.51017 1.20033 0.90365 0.87556 1.18870 1.16946 0.85345 0.83753 0.75950 1.90804 1.17594 1.85065 1.52082 1.45434 1.10486 1.05274 1.74148 1.20911 0.95710 0.78731 1.02881 1.23807 1.00594 0.93335 1.08196 1.87128 1.17146 1.03932 1.96248 1.28277 0.99141 1.05569 1.24568 0.78212 0.65471 0.67026 0.63322 1.26391 1.14936 1.05689 1.10147 1.26224 1.15130 1.10092 1.05184 1.26387 1.05515 1.19130 1.06009 1.21507 0.95523 0.92841 1.02341 1.20868 0.91200 0.95234 1.20468 1.96648 1.36002 1.62061 1.98032 1.21104 0.89779 0.90443 1.05675 1.24879 1.03705 0.86912 1.02196 1.86532 1.26720 1.75513 1.45899 0.85637 0.84280 0.79936 0.73518 1.18057 1.17026 1.13629 0.89200 0.87067 0.87978 0.74276 0.91071 0.91493 0.87594 0.86378 0.86309 0.87095 0.91920 0.91522 0.91246 0.90715 0.91113 0.91299 0.90865 0.90715 0.90159 0.79923 0.84611 0.76846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.03 10.26 127.77 1.31 1.28 16 2 N -0.39 -1.11 3.16 -519.60 -1.64 -2.76 16 3 C -0.05 -0.15 6.89 40.35 0.28 0.13 16 4 C 0.59 2.46 7.77 86.45 0.67 3.13 16 5 O -0.57 -6.31 14.57 -4.33 -0.06 -6.38 16 6 N -0.70 1.69 5.54 -467.08 -2.59 -0.90 16 7 C 0.14 -0.17 5.69 86.38 0.49 0.32 16 8 C -0.11 0.61 5.89 71.98 0.42 1.04 16 9 S -0.27 0.17 20.93 -56.49 -1.18 -1.01 16 10 C -0.38 2.19 5.17 113.37 0.59 2.78 16 11 Si 1.07 -8.06 12.04 68.60 0.83 -7.23 16 12 C -0.47 1.07 8.65 113.37 0.98 2.05 16 13 C -0.46 2.63 8.65 113.37 0.98 3.61 16 14 C -0.46 3.41 7.55 113.37 0.86 4.27 16 15 C -0.10 0.06 10.34 22.58 0.23 0.30 16 16 C -0.19 -0.28 6.08 22.03 0.13 -0.15 16 17 Br -0.01 0.00 28.79 -20.37 -0.59 -0.58 16 18 C 0.05 0.11 5.32 41.35 0.22 0.33 16 19 C -0.07 0.01 2.80 71.24 0.20 0.21 16 20 O -0.54 -1.36 12.88 -148.98 -1.92 -3.28 16 21 Si 0.95 -0.62 26.85 68.60 1.84 1.22 16 22 H -0.26 -0.27 7.11 99.48 0.71 0.44 16 23 H -0.25 -0.22 7.11 99.48 0.71 0.49 16 24 H -0.21 0.16 5.54 99.48 0.55 0.71 16 25 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 26 H 0.11 -0.66 7.27 -2.39 -0.02 -0.68 16 27 H 0.10 0.29 6.00 -2.39 -0.01 0.28 16 28 H 0.42 -3.68 7.37 -92.71 -0.68 -4.36 16 29 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.07 0.15 8.14 -2.38 -0.02 0.13 16 31 H 0.11 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H 0.12 -1.02 4.66 -2.39 -0.01 -1.03 16 33 H 0.12 -0.68 7.96 -2.39 -0.02 -0.70 16 34 H 0.11 -0.94 7.96 -2.39 -0.02 -0.96 16 35 H 0.06 -0.09 7.96 -2.39 -0.02 -0.11 16 36 H 0.07 -0.15 7.96 -2.38 -0.02 -0.17 16 37 H 0.07 -0.02 7.96 -2.39 -0.02 -0.04 16 38 H 0.07 -0.49 7.96 -2.38 -0.02 -0.51 16 39 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 40 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 41 H 0.07 -0.50 6.13 -2.39 -0.01 -0.52 16 42 H 0.07 -0.48 7.96 -2.38 -0.02 -0.50 16 43 H 0.08 -0.75 7.96 -2.39 -0.02 -0.77 16 44 H 0.18 -1.35 7.45 -2.91 -0.02 -1.37 16 45 H 0.14 -0.52 6.66 -2.39 -0.02 -0.53 16 46 H 0.38 -0.11 6.18 -74.06 -0.46 -0.57 16 Total: 0.00 -16.59 399.49 2.51 -14.08 By element: Atomic # 1 Polarization: -12.93 SS G_CDS: 0.46 Total: -12.47 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 7.37 Total: 19.30 kcal Atomic # 7 Polarization: 0.58 SS G_CDS: -4.23 Total: -3.65 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -1.98 Total: -9.65 kcal Atomic # 14 Polarization: -8.67 SS G_CDS: 2.67 Total: -6.01 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -1.18 Total: -1.01 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.59 Total: -0.58 kcal Total: -16.59 2.51 -14.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_5000100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.224 kcal (2) G-P(sol) polarization free energy of solvation -16.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds