Wall clock time and date at job start Tue Mar 9 2021 15:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86301 * 109.47009 * 2 1 4 4 C 1.86302 * 109.47198 * 239.99946 * 2 1 3 5 5 C 1.86301 * 109.47368 * 120.00177 * 2 1 3 6 6 S 1.81399 * 109.47406 * 59.04824 * 5 2 1 7 7 C 1.81396 * 103.00372 * 184.42731 * 6 5 2 8 8 C 1.52997 * 109.47207 * 175.57755 * 7 6 5 9 9 N 1.46500 * 109.46915 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99771 * 180.02562 * 9 8 7 11 11 O 1.21284 * 120.00469 * 359.97438 * 10 9 8 12 12 C 1.50705 * 120.00083 * 180.02562 * 10 9 8 13 13 O 1.42899 * 109.47487 * 179.97438 * 12 10 9 14 14 C 1.35915 * 117.00488 * 180.02562 * 13 12 10 15 15 C 1.38672 * 120.05305 * 359.97438 * 14 13 12 16 16 C 1.38194 * 119.95140 * 179.97438 * 15 14 13 17 17 C 1.38236 * 120.06878 * 0.02709 * 16 15 14 18 18 C 1.50709 * 119.93561 * 179.97438 * 17 16 15 19 19 O 1.42894 * 109.47151 * 300.00086 * 18 17 16 20 20 Si 1.86300 * 109.46740 * 179.97438 * 18 17 16 21 21 H 1.48500 * 109.47578 * 300.00450 * 20 18 17 22 22 H 1.48506 * 109.46817 * 60.00321 * 20 18 17 23 23 H 1.48494 * 109.47183 * 179.97438 * 20 18 17 24 24 C 1.38277 * 120.12042 * 0.24943 * 17 16 15 25 25 C 1.38193 * 120.04788 * 359.45218 * 24 17 16 26 26 Br 1.89099 * 120.03956 * 180.25588 * 25 24 17 27 27 H 1.09003 * 109.46908 * 299.99526 * 1 2 3 28 28 H 1.08996 * 109.47099 * 60.00106 * 1 2 3 29 29 H 1.09000 * 109.46889 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46847 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47103 * 299.99891 * 3 2 1 32 32 H 1.09003 * 109.46899 * 60.00468 * 3 2 1 33 33 H 1.08999 * 109.47476 * 297.55529 * 4 2 1 34 34 H 1.09001 * 109.47011 * 57.55681 * 4 2 1 35 35 H 1.09000 * 109.47442 * 177.55365 * 4 2 1 36 36 H 1.09003 * 109.46959 * 299.04835 * 5 2 1 37 37 H 1.09000 * 109.47446 * 179.04781 * 5 2 1 38 38 H 1.09000 * 109.47096 * 55.57794 * 7 6 5 39 39 H 1.09007 * 109.46776 * 295.57779 * 7 6 5 40 40 H 1.09000 * 109.47061 * 60.00017 * 8 7 6 41 41 H 1.08999 * 109.47403 * 299.99972 * 8 7 6 42 42 H 0.96993 * 120.00457 * 359.97438 * 9 8 7 43 43 H 1.09000 * 109.46960 * 60.00085 * 12 10 9 44 44 H 1.08994 * 109.47014 * 299.99836 * 12 10 9 45 45 H 1.08005 * 120.02883 * 359.96010 * 15 14 13 46 46 H 1.07997 * 119.96199 * 180.02562 * 16 15 14 47 47 H 1.08996 * 109.47006 * 60.00242 * 18 17 16 48 48 H 0.96707 * 113.99782 * 180.02562 * 19 18 17 49 49 H 1.08006 * 119.97956 * 179.72936 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4841 -0.8783 1.5211 6 16 1.8564 -2.5801 1.5354 7 6 2.4436 -3.2183 3.1286 8 6 1.8967 -4.6307 3.3451 9 7 2.3714 -5.1463 4.6316 10 6 2.0140 -6.3813 5.0358 11 8 1.2989 -7.0657 4.3349 12 6 2.5018 -6.9116 6.3595 13 8 1.9911 -8.2308 6.5617 14 6 2.3390 -8.8569 7.7168 15 6 3.1552 -8.2152 8.6360 16 6 3.5071 -8.8535 9.8100 17 6 3.0469 -10.1311 10.0686 18 6 3.4330 -10.8248 11.3496 19 8 4.8551 -10.9496 11.4138 20 14 2.6575 -12.5180 11.3971 21 1 1.1797 -12.3878 11.3306 22 1 3.1368 -13.3145 10.2389 23 1 3.0384 -13.2018 12.6590 24 6 2.2376 -10.7760 9.1514 25 6 1.8775 -10.1399 7.9786 26 35 0.7648 -11.0192 6.7278 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1206 2.2703 -0.8900 32 1 2.1207 2.2703 0.8901 33 1 2.1570 -1.9178 -1.4995 34 1 2.0853 -0.3903 -2.4106 35 1 3.5731 -0.8404 -1.5434 36 1 2.1347 -0.3547 2.4110 37 1 3.5739 -0.8931 1.5126 38 1 2.0964 -2.5674 3.9310 39 1 3.5333 -3.2465 3.1294 40 1 2.2439 -5.2817 2.5427 41 1 0.8071 -4.6026 3.3443 42 1 2.9436 -4.5993 5.1920 43 1 2.1542 -6.2609 7.1619 44 1 3.5914 -6.9393 6.3604 45 1 3.5157 -7.2172 8.4345 46 1 4.1424 -8.3537 10.5263 47 1 3.0809 -10.2403 12.1996 48 1 5.1757 -11.3883 12.2137 49 1 1.8828 -11.7759 9.3538 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310322_6201210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:14:29 Heat of formation + Delta-G solvation = -114.788386 kcal Electronic energy + Delta-G solvation = -27493.026996 eV Core-core repulsion = 23330.764678 eV Total energy + Delta-G solvation = -4162.262318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 435.049 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.69449 -40.67784 -39.07879 -37.29055 -36.51286 -33.56750 -32.47475 -32.06633 -30.43194 -29.97468 -29.30009 -28.66998 -28.32063 -28.30648 -26.33190 -24.52845 -23.68377 -22.30098 -21.79937 -19.58863 -18.69665 -18.34736 -17.62579 -17.51473 -17.03248 -16.84865 -16.65379 -16.56373 -16.26321 -15.56537 -15.36825 -15.15803 -14.82581 -14.66868 -14.59679 -14.52469 -14.10506 -14.02862 -13.97081 -13.92822 -13.76510 -13.64055 -13.50547 -13.28316 -13.12923 -13.08888 -12.98440 -12.85757 -12.52058 -12.31555 -12.20945 -12.08834 -11.87980 -11.76000 -11.31312 -11.26464 -11.18396 -10.78816 -10.74395 -10.62836 -10.33977 -10.32192 -10.01835 -9.30973 -8.62673 -0.05257 0.06512 0.48186 0.58804 1.14803 1.39491 1.39595 1.42275 1.46075 1.52944 1.79544 1.89915 1.93990 2.13403 2.37529 2.53694 2.65479 3.35406 3.47236 3.62850 3.67312 3.83245 3.84270 3.84649 4.03089 4.05529 4.06367 4.32149 4.34368 4.35073 4.40611 4.64297 4.66138 4.77605 4.78501 4.78728 4.81795 4.82444 4.86224 4.86545 4.87439 4.95352 5.03394 5.16733 5.30173 5.45298 5.57079 5.65823 5.66738 6.03433 6.36952 6.84022 7.06220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.082 2.918 3 C -0.447 4.447 4 C -0.466 4.466 5 C -0.378 4.378 6 S -0.275 6.275 7 C -0.097 4.097 8 C 0.140 3.860 9 N -0.706 5.706 10 C 0.512 3.488 11 O -0.569 6.569 12 C 0.035 3.965 13 O -0.306 6.306 14 C 0.148 3.852 15 C -0.193 4.193 16 C -0.028 4.028 17 C -0.116 4.116 18 C -0.061 4.061 19 O -0.558 6.558 20 Si 0.945 3.055 21 H -0.261 1.261 22 H -0.276 1.276 23 H -0.246 1.246 24 C -0.071 4.071 25 C -0.141 4.141 26 Br -0.053 7.053 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.424 0.576 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.179 0.821 46 H 0.165 0.835 47 H 0.110 0.890 48 H 0.400 0.600 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.385 9.023 7.320 13.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.273 2.727 3 C -0.557 4.557 4 C -0.572 4.572 5 C -0.570 4.570 6 S -0.050 6.050 7 C -0.245 4.245 8 C 0.015 3.985 9 N -0.362 5.362 10 C 0.298 3.702 11 O -0.446 6.446 12 C -0.042 4.042 13 O -0.218 6.218 14 C 0.100 3.900 15 C -0.212 4.212 16 C -0.047 4.047 17 C -0.117 4.117 18 C -0.173 4.173 19 O -0.368 6.368 20 Si 0.771 3.229 21 H -0.186 1.186 22 H -0.202 1.202 23 H -0.169 1.169 24 C -0.091 4.091 25 C -0.221 4.221 26 Br 0.032 6.968 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.262 0.738 43 H 0.152 0.848 44 H 0.150 0.850 45 H 0.196 0.804 46 H 0.183 0.817 47 H 0.128 0.872 48 H 0.251 0.749 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.328 7.044 4.909 9.615 hybrid contribution 1.090 0.624 1.529 1.979 sum 5.418 7.669 6.438 11.385 Atomic orbital electron populations 1.26324 1.22151 1.04167 1.04406 0.77852 0.65421 0.66315 0.63096 1.26091 1.06695 1.17793 1.05096 1.26336 1.06478 1.08135 1.16219 1.28203 1.09815 0.97746 1.21265 1.87260 1.74788 1.16043 1.26878 1.23552 1.04774 0.97765 0.98435 1.20866 0.99299 0.93024 0.85295 1.45584 1.53050 1.15828 1.21772 1.20566 0.80190 0.81738 0.87749 1.90805 1.38139 1.58592 1.57109 1.22834 1.02193 0.83149 0.96056 1.86235 1.69808 1.29886 1.35900 1.18764 0.94191 0.90740 0.86258 1.21668 1.01575 1.03095 0.94827 1.21266 0.94741 0.92657 0.95994 1.19434 0.99916 0.96119 0.96227 1.24393 0.87043 1.08474 0.97342 1.86443 1.18552 1.83323 1.48458 0.85763 0.79477 0.77119 0.80509 1.18577 1.20154 1.16921 1.20878 0.97417 0.99313 0.91497 1.21069 1.07277 0.95772 0.98002 1.96750 1.64877 1.77518 1.57613 0.91022 0.91300 0.91867 0.90586 0.90758 0.90558 0.91933 0.91273 0.91021 0.87168 0.87385 0.87587 0.87755 0.92125 0.91913 0.73791 0.84793 0.85011 0.80400 0.81727 0.87226 0.74873 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.93 8.65 113.37 0.98 1.91 16 2 Si 1.08 -6.68 12.30 68.60 0.84 -5.83 16 3 C -0.45 2.81 8.65 113.37 0.98 3.79 16 4 C -0.47 0.89 8.65 113.37 0.98 1.87 16 5 C -0.38 2.27 5.14 113.37 0.58 2.85 16 6 S -0.27 0.06 20.84 -56.49 -1.18 -1.11 16 7 C -0.10 0.52 6.05 71.98 0.44 0.96 16 8 C 0.14 -0.06 5.68 86.38 0.49 0.43 16 9 N -0.71 3.14 5.56 -463.06 -2.57 0.57 16 10 C 0.51 1.47 7.91 87.66 0.69 2.17 16 11 O -0.57 -8.97 16.50 16.00 0.26 -8.71 16 12 C 0.04 -0.14 5.22 71.24 0.37 0.23 16 13 O -0.31 -1.90 9.01 -73.56 -0.66 -2.56 16 14 C 0.15 0.63 6.68 22.52 0.15 0.78 16 15 C -0.19 0.65 9.04 22.36 0.20 0.85 16 16 C -0.03 0.09 9.60 22.26 0.21 0.30 16 17 C -0.12 -0.08 5.42 -19.85 -0.11 -0.19 16 18 C -0.06 0.22 2.81 71.24 0.20 0.42 16 19 O -0.56 1.99 12.74 -148.98 -1.90 0.09 16 20 Si 0.95 -0.62 25.07 68.60 1.72 1.10 16 21 H -0.26 -0.44 7.11 99.48 0.71 0.27 16 22 H -0.28 -1.27 7.11 99.48 0.71 -0.56 16 23 H -0.25 0.46 7.11 99.48 0.71 1.17 16 24 C -0.07 -0.37 8.40 22.27 0.19 -0.19 16 25 C -0.14 -1.12 6.24 22.40 0.14 -0.98 16 26 Br -0.05 -0.60 33.16 -20.37 -0.68 -1.28 16 27 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 28 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 29 H 0.06 0.05 7.96 -2.39 -0.02 0.04 16 30 H 0.07 -0.52 7.96 -2.39 -0.02 -0.54 16 31 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 32 H 0.08 -0.53 7.96 -2.39 -0.02 -0.55 16 33 H 0.06 0.06 7.96 -2.39 -0.02 0.04 16 34 H 0.07 -0.13 7.96 -2.39 -0.02 -0.14 16 35 H 0.07 -0.19 7.96 -2.39 -0.02 -0.20 16 36 H 0.11 -0.93 7.96 -2.39 -0.02 -0.95 16 37 H 0.11 -0.87 7.96 -2.39 -0.02 -0.88 16 38 H 0.11 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H 0.10 -0.86 8.14 -2.39 -0.02 -0.88 16 40 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.42 -5.64 8.47 -92.71 -0.79 -6.42 16 43 H 0.13 -1.55 7.66 -2.39 -0.02 -1.57 16 44 H 0.13 -1.46 7.66 -2.39 -0.02 -1.48 16 45 H 0.18 -2.12 6.30 -2.91 -0.02 -2.14 16 46 H 0.17 -1.37 8.06 -2.91 -0.02 -1.39 16 47 H 0.11 -1.01 7.96 -2.39 -0.02 -1.03 16 48 H 0.40 -4.89 8.74 -74.05 -0.65 -5.54 16 49 H 0.13 0.64 4.88 -2.91 -0.01 0.63 16 Total: 0.00 -28.61 440.54 2.63 -25.98 By element: Atomic # 1 Polarization: -23.72 SS G_CDS: 0.29 Total: -23.44 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 6.50 Total: 15.19 kcal Atomic # 7 Polarization: 3.14 SS G_CDS: -2.57 Total: 0.57 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -2.30 Total: -11.18 kcal Atomic # 14 Polarization: -7.30 SS G_CDS: 2.56 Total: -4.74 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -1.18 Total: -1.11 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -0.68 Total: -1.28 kcal Total: -28.61 2.63 -25.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_6201210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.808 kcal (2) G-P(sol) polarization free energy of solvation -28.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds