Wall clock time and date at job start Tue Mar 9 2021 15:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86307 * 109.46751 * 2 1 4 4 C 1.86300 * 109.47328 * 240.00055 * 2 1 3 5 5 C 1.86298 * 109.47426 * 119.99758 * 2 1 3 6 6 S 1.81397 * 109.46823 * 59.05002 * 5 2 1 7 7 C 1.81406 * 103.00088 * 184.42185 * 6 5 2 8 8 C 1.52992 * 109.47351 * 175.57568 * 7 6 5 9 9 N 1.46498 * 109.47486 * 180.02562 * 8 7 6 10 10 C 1.34776 * 120.00424 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00025 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00020 * 180.02562 * 10 9 8 13 13 N 1.46494 * 109.47283 * 179.97438 * 12 10 9 14 14 C 1.36833 * 125.06575 * 264.97771 * 13 12 10 15 15 C 1.34240 * 109.94208 * 180.02562 * 14 13 12 16 16 C 1.50691 * 126.50392 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.47187 * 104.98075 * 16 15 14 18 18 Si 1.86297 * 109.47136 * 344.98119 * 16 15 14 19 19 H 1.48499 * 109.47254 * 179.97438 * 18 16 15 20 20 H 1.48497 * 109.47271 * 299.99859 * 18 16 15 21 21 H 1.48501 * 109.47200 * 59.99879 * 18 16 15 22 22 C 1.46491 * 106.99672 * 359.78671 * 15 14 13 23 23 C 1.39590 * 134.03438 * 179.58013 * 22 15 14 24 24 C 1.36660 * 119.76714 * 180.36812 * 23 22 15 25 25 C 1.38789 * 120.52772 * 0.25229 * 24 23 22 26 26 C 1.37795 * 120.66677 * 359.97438 * 25 24 23 27 27 C 1.37701 * 125.06045 * 84.99815 * 13 12 10 28 28 H 1.08996 * 109.47141 * 299.99711 * 1 2 3 29 29 H 1.08997 * 109.47626 * 60.00325 * 1 2 3 30 30 H 1.09007 * 109.46616 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46900 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47080 * 299.99469 * 3 2 1 33 33 H 1.08996 * 109.47062 * 60.00240 * 3 2 1 34 34 H 1.09003 * 109.47131 * 297.55724 * 4 2 1 35 35 H 1.09001 * 109.46945 * 57.55396 * 4 2 1 36 36 H 1.08993 * 109.47409 * 177.55425 * 4 2 1 37 37 H 1.08999 * 109.47269 * 299.05226 * 5 2 1 38 38 H 1.09000 * 109.47108 * 179.04881 * 5 2 1 39 39 H 1.09008 * 109.46587 * 55.57716 * 7 6 5 40 40 H 1.08994 * 109.47413 * 295.58148 * 7 6 5 41 41 H 1.08999 * 109.47174 * 60.00240 * 8 7 6 42 42 H 1.09006 * 109.47499 * 300.00287 * 8 7 6 43 43 H 0.97007 * 119.99541 * 0.02562 * 9 8 7 44 44 H 1.08999 * 109.47017 * 59.99994 * 12 10 9 45 45 H 1.08994 * 109.47451 * 300.00408 * 12 10 9 46 46 H 1.08004 * 125.02922 * 0.04162 * 14 13 12 47 47 H 1.08999 * 109.47251 * 224.97769 * 16 15 14 48 48 H 0.96701 * 114.00333 * 180.02562 * 17 16 15 49 49 H 1.07998 * 120.11399 * 0.64619 * 23 22 15 50 50 H 1.07997 * 119.73803 * 180.27728 * 24 23 22 51 51 H 1.07997 * 119.66744 * 179.97438 * 25 24 23 52 52 H 1.07995 * 120.10626 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7566 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4841 -0.8781 1.5211 6 16 1.8564 -2.5800 1.5354 7 6 2.4437 -3.2182 3.1287 8 6 1.8968 -4.6306 3.3452 9 7 2.3706 -5.1458 4.6321 10 6 2.0130 -6.3807 5.0366 11 8 1.2993 -7.0657 4.3349 12 6 2.4999 -6.9104 6.3607 13 7 1.9764 -8.2628 6.5681 14 6 0.8404 -8.5674 7.2674 15 6 0.6450 -9.8955 7.2674 16 6 -0.4910 -10.6344 7.9264 17 8 -1.4194 -11.0671 6.9300 18 14 -1.3533 -9.5026 9.1290 19 1 -2.4731 -10.2306 9.7780 20 1 -0.3885 -9.0530 10.1644 21 1 -1.8860 -8.3219 8.4027 22 6 1.7431 -10.4899 6.5013 23 6 2.0916 -11.7978 6.1604 24 6 3.2156 -12.0290 5.4183 25 6 4.0168 -10.9738 5.0048 26 6 3.6939 -9.6752 5.3340 27 6 2.5544 -9.4169 6.0885 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 3.5739 1.7566 -0.0005 32 1 2.1206 2.2703 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1570 -1.9178 -1.4995 35 1 2.0854 -0.3903 -2.4106 36 1 3.5731 -0.8404 -1.5433 37 1 2.1348 -0.3546 2.4110 38 1 3.5740 -0.8929 1.5126 39 1 2.0965 -2.5672 3.9311 40 1 3.5333 -3.2464 3.1295 41 1 2.2439 -5.2816 2.5428 42 1 0.8071 -4.6024 3.3445 43 1 2.9418 -4.5981 5.1932 44 1 2.1517 -6.2595 7.1627 45 1 3.5895 -6.9379 6.3626 46 1 0.1962 -7.8460 7.7481 47 1 -0.1000 -11.5010 8.4594 48 1 -2.1786 -11.5508 7.2834 49 1 1.4728 -12.6239 6.4782 50 1 3.4824 -13.0408 5.1510 51 1 4.9022 -11.1723 4.4192 52 1 4.3240 -8.8610 5.0079 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310322_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:17:42 Heat of formation + Delta-G solvation = -48.106077 kcal Electronic energy + Delta-G solvation = -29102.096753 eV Core-core repulsion = 25123.810381 eV Total energy + Delta-G solvation = -3978.286372 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 380.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.42305 -40.61486 -37.92818 -37.53977 -36.47220 -34.15485 -32.22689 -31.08263 -30.15558 -30.12375 -29.03740 -28.71305 -28.51367 -28.43150 -25.76445 -24.23657 -23.49604 -22.52336 -21.68913 -20.41613 -18.67688 -18.31236 -18.16739 -17.65543 -17.17107 -16.94203 -16.70396 -16.29113 -15.88331 -15.80438 -15.56743 -15.10690 -14.96515 -14.83483 -14.64742 -14.56294 -14.43341 -14.35634 -14.27745 -14.09048 -13.86628 -13.62381 -13.51424 -13.49628 -13.41559 -13.23393 -13.21696 -13.12480 -12.85349 -12.61810 -12.40087 -12.34435 -12.11513 -11.89303 -11.54721 -11.45713 -11.22365 -10.95122 -10.89115 -10.79350 -10.36734 -10.30421 -10.10595 -8.96959 -8.69073 -8.47753 0.30254 0.37843 0.85040 1.23036 1.27472 1.40973 1.42328 1.48731 1.55603 1.60284 1.76085 1.78984 1.88755 1.96078 2.22514 2.47658 3.14574 3.42622 3.49658 3.57932 3.68886 3.74762 3.78167 3.84496 3.91358 4.07645 4.13285 4.19159 4.36310 4.40208 4.49111 4.56315 4.58414 4.59306 4.61537 4.72389 4.73745 4.74047 4.75078 4.77553 4.81285 4.83606 4.95363 5.03901 5.12833 5.30340 5.35200 5.52273 5.55595 5.69427 5.85301 5.90664 5.94648 6.13768 6.33215 6.41265 6.80015 7.00208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.022 2.978 3 C -0.442 4.442 4 C -0.447 4.447 5 C -0.384 4.384 6 S -0.216 6.216 7 C -0.114 4.114 8 C 0.136 3.864 9 N -0.729 5.729 10 C 0.490 3.510 11 O -0.507 6.507 12 C 0.093 3.907 13 N -0.467 5.467 14 C 0.065 3.935 15 C -0.154 4.154 16 C -0.043 4.043 17 O -0.544 6.544 18 Si 0.940 3.060 19 H -0.253 1.253 20 H -0.249 1.249 21 H -0.250 1.250 22 C -0.083 4.083 23 C -0.064 4.064 24 C -0.146 4.146 25 C -0.097 4.097 26 C -0.127 4.127 27 C 0.108 3.892 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.402 0.598 44 H 0.123 0.877 45 H 0.119 0.881 46 H 0.166 0.834 47 H 0.072 0.928 48 H 0.375 0.625 49 H 0.123 0.877 50 H 0.123 0.877 51 H 0.125 0.875 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 5.288 3.542 7.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.217 2.783 3 C -0.551 4.551 4 C -0.555 4.555 5 C -0.576 4.576 6 S 0.009 5.991 7 C -0.263 4.263 8 C 0.012 3.988 9 N -0.384 5.384 10 C 0.273 3.727 11 O -0.380 6.380 12 C -0.033 4.033 13 N -0.150 5.150 14 C -0.060 4.060 15 C -0.161 4.161 16 C -0.154 4.154 17 O -0.349 6.349 18 Si 0.762 3.238 19 H -0.176 1.176 20 H -0.173 1.173 21 H -0.173 1.173 22 C -0.088 4.088 23 C -0.083 4.083 24 C -0.165 4.165 25 C -0.116 4.116 26 C -0.148 4.148 27 C 0.004 3.996 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.236 0.764 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.183 0.817 47 H 0.090 0.910 48 H 0.222 0.778 49 H 0.141 0.859 50 H 0.141 0.859 51 H 0.143 0.857 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.250 5.389 2.469 6.340 hybrid contribution 0.965 0.584 1.324 1.739 sum 3.214 5.973 3.792 7.771 Atomic orbital electron populations 1.26087 1.19926 1.05076 1.04376 0.78789 0.67740 0.67151 0.64643 1.26040 1.06297 1.17882 1.04879 1.26091 1.06177 1.08585 1.14695 1.28106 1.09088 0.99964 1.20471 1.86968 1.73843 1.13435 1.24811 1.23635 1.04029 0.99161 0.99445 1.21000 1.00193 0.92083 0.85518 1.45939 1.53644 1.16819 1.21985 1.21035 0.81446 0.81622 0.88565 1.90848 1.35321 1.56755 1.55070 1.21560 1.01732 0.83426 0.96571 1.43145 1.22246 1.03793 1.45829 1.21465 0.89606 0.96004 0.98928 1.19451 0.97558 0.91898 1.07192 1.23955 0.91537 1.03132 0.96763 1.86594 1.36436 1.77318 1.34547 0.85903 0.80202 0.80100 0.77585 1.17638 1.17272 1.17334 1.18919 0.95412 0.92833 1.01596 1.20276 0.96250 0.94669 0.97079 1.20660 0.95953 0.99116 1.00738 1.20816 0.99657 0.91582 0.99569 1.19945 0.96084 0.97402 1.01353 1.18165 0.96454 0.84904 1.00056 0.91271 0.91098 0.90508 0.91097 0.90584 0.91106 0.90576 0.91048 0.91244 0.88547 0.88588 0.89448 0.89435 0.90262 0.90206 0.76385 0.85951 0.86296 0.81724 0.91037 0.77810 0.85942 0.85912 0.85730 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.56 8.65 101.05 0.87 1.44 16 2 Si 1.02 -2.96 12.30 -169.99 -2.09 -5.05 16 3 C -0.44 1.11 8.65 101.05 0.87 1.98 16 4 C -0.45 0.56 8.65 101.05 0.87 1.43 16 5 C -0.38 0.89 5.14 101.05 0.52 1.41 16 6 S -0.22 0.03 20.84 -107.50 -2.24 -2.21 16 7 C -0.11 0.23 6.05 37.15 0.22 0.46 16 8 C 0.14 -0.04 5.68 -4.05 -0.02 -0.06 16 9 N -0.73 1.32 5.56 -60.30 -0.33 0.98 16 10 C 0.49 0.58 7.90 -10.99 -0.09 0.50 16 11 O -0.51 -3.45 16.42 5.56 0.09 -3.36 16 12 C 0.09 -0.14 6.48 -5.20 -0.03 -0.17 16 13 N -0.47 -1.23 2.27 -115.71 -0.26 -1.49 16 14 C 0.06 0.18 9.89 -16.73 -0.17 0.02 16 15 C -0.15 -0.62 5.61 -102.71 -0.58 -1.20 16 16 C -0.04 -0.07 3.05 36.00 0.11 0.04 16 17 O -0.54 -1.43 12.86 -35.23 -0.45 -1.88 16 18 Si 0.94 0.16 26.08 -169.99 -4.43 -4.27 16 19 H -0.25 -0.04 7.11 56.52 0.40 0.36 16 20 H -0.25 -0.09 7.11 56.52 0.40 0.32 16 21 H -0.25 -0.33 7.03 56.52 0.40 0.07 16 22 C -0.08 -0.44 6.35 -105.13 -0.67 -1.10 16 23 C -0.06 -0.26 10.05 -39.65 -0.40 -0.66 16 24 C -0.15 -0.44 9.97 -39.95 -0.40 -0.83 16 25 C -0.10 -0.26 10.01 -39.54 -0.40 -0.66 16 26 C -0.13 -0.42 10.00 -39.43 -0.39 -0.81 16 27 C 0.11 0.49 6.80 -83.98 -0.57 -0.08 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 30 H 0.08 -0.02 7.96 -51.92 -0.41 -0.43 16 31 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 32 H 0.08 -0.18 7.96 -51.93 -0.41 -0.59 16 33 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 34 H 0.08 -0.02 7.96 -51.93 -0.41 -0.43 16 35 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 36 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 37 H 0.10 -0.29 7.96 -51.92 -0.41 -0.71 16 38 H 0.10 -0.28 7.96 -51.92 -0.41 -0.69 16 39 H 0.09 -0.26 8.14 -51.92 -0.42 -0.69 16 40 H 0.09 -0.25 8.14 -51.93 -0.42 -0.68 16 41 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 43 H 0.40 -2.15 8.47 -40.82 -0.35 -2.50 16 44 H 0.12 -0.60 8.12 -51.93 -0.42 -1.02 16 45 H 0.12 -0.48 8.14 -51.93 -0.42 -0.90 16 46 H 0.17 0.04 6.29 -52.48 -0.33 -0.29 16 47 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 48 H 0.38 -0.84 8.74 45.56 0.40 -0.45 16 49 H 0.12 0.32 8.06 -52.49 -0.42 -0.10 16 50 H 0.12 0.11 8.06 -52.49 -0.42 -0.32 16 51 H 0.12 0.05 8.06 -52.49 -0.42 -0.37 16 52 H 0.11 0.14 8.06 -52.49 -0.42 -0.28 16 LS Contribution 446.64 15.07 6.73 6.73 Total: 0.00 -11.34 446.64 -11.49 -22.83 By element: Atomic # 1 Polarization: -5.71 SS G_CDS: -8.27 Total: -13.98 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -0.23 Total: 1.68 kcal Atomic # 7 Polarization: 0.09 SS G_CDS: -0.60 Total: -0.50 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.36 Total: -5.24 kcal Atomic # 14 Polarization: -2.80 SS G_CDS: -6.52 Total: -9.32 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.24 Total: -2.21 kcal Total LS contribution 6.73 Total: 6.73 kcal Total: -11.34 -11.49 -22.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.271 kcal (2) G-P(sol) polarization free energy of solvation -11.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds