Wall clock time and date at job start Tue Mar 9 2021 15:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86307 * 109.46751 * 2 1 4 4 C 1.86300 * 109.47328 * 240.00055 * 2 1 3 5 5 C 1.86298 * 109.47426 * 119.99758 * 2 1 3 6 6 S 1.81397 * 109.46823 * 59.05002 * 5 2 1 7 7 C 1.81406 * 103.00088 * 184.42185 * 6 5 2 8 8 C 1.52992 * 109.47351 * 175.57568 * 7 6 5 9 9 N 1.46498 * 109.47486 * 180.02562 * 8 7 6 10 10 C 1.34776 * 120.00424 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00025 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00020 * 180.02562 * 10 9 8 13 13 N 1.46494 * 109.47283 * 179.97438 * 12 10 9 14 14 C 1.36833 * 125.06575 * 264.97771 * 13 12 10 15 15 C 1.34240 * 109.94208 * 180.02562 * 14 13 12 16 16 C 1.50691 * 126.50392 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.47187 * 104.98075 * 16 15 14 18 18 Si 1.86297 * 109.47136 * 344.98119 * 16 15 14 19 19 H 1.48499 * 109.47254 * 179.97438 * 18 16 15 20 20 H 1.48497 * 109.47271 * 299.99859 * 18 16 15 21 21 H 1.48501 * 109.47200 * 59.99879 * 18 16 15 22 22 C 1.46491 * 106.99672 * 359.78671 * 15 14 13 23 23 C 1.39590 * 134.03438 * 179.58013 * 22 15 14 24 24 C 1.36660 * 119.76714 * 180.36812 * 23 22 15 25 25 C 1.38789 * 120.52772 * 0.25229 * 24 23 22 26 26 C 1.37795 * 120.66677 * 359.97438 * 25 24 23 27 27 C 1.37701 * 125.06045 * 84.99815 * 13 12 10 28 28 H 1.08996 * 109.47141 * 299.99711 * 1 2 3 29 29 H 1.08997 * 109.47626 * 60.00325 * 1 2 3 30 30 H 1.09007 * 109.46616 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46900 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47080 * 299.99469 * 3 2 1 33 33 H 1.08996 * 109.47062 * 60.00240 * 3 2 1 34 34 H 1.09003 * 109.47131 * 297.55724 * 4 2 1 35 35 H 1.09001 * 109.46945 * 57.55396 * 4 2 1 36 36 H 1.08993 * 109.47409 * 177.55425 * 4 2 1 37 37 H 1.08999 * 109.47269 * 299.05226 * 5 2 1 38 38 H 1.09000 * 109.47108 * 179.04881 * 5 2 1 39 39 H 1.09008 * 109.46587 * 55.57716 * 7 6 5 40 40 H 1.08994 * 109.47413 * 295.58148 * 7 6 5 41 41 H 1.08999 * 109.47174 * 60.00240 * 8 7 6 42 42 H 1.09006 * 109.47499 * 300.00287 * 8 7 6 43 43 H 0.97007 * 119.99541 * 0.02562 * 9 8 7 44 44 H 1.08999 * 109.47017 * 59.99994 * 12 10 9 45 45 H 1.08994 * 109.47451 * 300.00408 * 12 10 9 46 46 H 1.08004 * 125.02922 * 0.04162 * 14 13 12 47 47 H 1.08999 * 109.47251 * 224.97769 * 16 15 14 48 48 H 0.96701 * 114.00333 * 180.02562 * 17 16 15 49 49 H 1.07998 * 120.11399 * 0.64619 * 23 22 15 50 50 H 1.07997 * 119.73803 * 180.27728 * 24 23 22 51 51 H 1.07997 * 119.66744 * 179.97438 * 25 24 23 52 52 H 1.07995 * 120.10626 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7566 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4841 -0.8781 1.5211 6 16 1.8564 -2.5800 1.5354 7 6 2.4437 -3.2182 3.1287 8 6 1.8968 -4.6306 3.3452 9 7 2.3706 -5.1458 4.6321 10 6 2.0130 -6.3807 5.0366 11 8 1.2993 -7.0657 4.3349 12 6 2.4999 -6.9104 6.3607 13 7 1.9764 -8.2628 6.5681 14 6 0.8404 -8.5674 7.2674 15 6 0.6450 -9.8955 7.2674 16 6 -0.4910 -10.6344 7.9264 17 8 -1.4194 -11.0671 6.9300 18 14 -1.3533 -9.5026 9.1290 19 1 -2.4731 -10.2306 9.7780 20 1 -0.3885 -9.0530 10.1644 21 1 -1.8860 -8.3219 8.4027 22 6 1.7431 -10.4899 6.5013 23 6 2.0916 -11.7978 6.1604 24 6 3.2156 -12.0290 5.4183 25 6 4.0168 -10.9738 5.0048 26 6 3.6939 -9.6752 5.3340 27 6 2.5544 -9.4169 6.0885 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 3.5739 1.7566 -0.0005 32 1 2.1206 2.2703 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1570 -1.9178 -1.4995 35 1 2.0854 -0.3903 -2.4106 36 1 3.5731 -0.8404 -1.5433 37 1 2.1348 -0.3546 2.4110 38 1 3.5740 -0.8929 1.5126 39 1 2.0965 -2.5672 3.9311 40 1 3.5333 -3.2464 3.1295 41 1 2.2439 -5.2816 2.5428 42 1 0.8071 -4.6024 3.3445 43 1 2.9418 -4.5981 5.1932 44 1 2.1517 -6.2595 7.1627 45 1 3.5895 -6.9379 6.3626 46 1 0.1962 -7.8460 7.7481 47 1 -0.1000 -11.5010 8.4594 48 1 -2.1786 -11.5508 7.2834 49 1 1.4728 -12.6239 6.4782 50 1 3.4824 -13.0408 5.1510 51 1 4.9022 -11.1723 4.4192 52 1 4.3240 -8.8610 5.0079 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310322_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:17:41 Heat of formation + Delta-G solvation = -45.225058 kcal Electronic energy + Delta-G solvation = -29101.971822 eV Core-core repulsion = 25123.810381 eV Total energy + Delta-G solvation = -3978.161442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 380.150 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.54752 -40.72802 -38.07471 -37.64874 -36.55358 -34.25464 -32.25732 -31.17754 -30.29280 -29.98678 -28.96868 -28.63260 -28.33428 -28.32320 -25.84158 -24.24995 -23.63844 -22.66498 -21.75439 -20.56553 -18.70013 -18.41496 -18.24965 -17.75652 -17.15386 -16.95705 -16.71001 -16.43992 -15.93837 -15.79282 -15.66605 -15.09905 -14.92108 -14.78454 -14.76965 -14.62013 -14.50889 -14.45584 -14.11892 -13.98469 -13.68963 -13.62540 -13.52976 -13.36620 -13.30422 -13.13849 -13.10404 -13.00112 -12.85272 -12.71082 -12.58096 -12.48457 -12.12948 -11.96689 -11.68594 -11.33618 -11.31863 -10.83090 -10.76086 -10.65777 -10.55102 -10.35113 -10.17582 -9.17207 -8.65586 -8.64477 0.12427 0.46396 0.65268 1.20121 1.33726 1.36965 1.46626 1.48605 1.56952 1.70161 1.76750 1.92520 1.93095 2.09074 2.26304 2.63825 2.94206 3.53374 3.58389 3.60385 3.71368 3.78036 3.80492 3.86468 4.03144 4.08484 4.23270 4.28622 4.30634 4.32546 4.41238 4.57881 4.60179 4.69768 4.73680 4.76828 4.78842 4.80290 4.80911 4.84584 4.85234 4.85743 4.90253 4.93477 5.14136 5.15642 5.50766 5.55631 5.64307 5.65138 5.65773 5.73011 5.74434 6.13323 6.21809 6.38163 6.91105 7.03780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.085 2.915 3 C -0.447 4.447 4 C -0.466 4.466 5 C -0.378 4.378 6 S -0.276 6.276 7 C -0.097 4.097 8 C 0.140 3.860 9 N -0.708 5.708 10 C 0.490 3.510 11 O -0.572 6.572 12 C 0.090 3.910 13 N -0.469 5.469 14 C 0.060 3.940 15 C -0.183 4.183 16 C -0.055 4.055 17 O -0.570 6.570 18 Si 0.987 3.013 19 H -0.251 1.251 20 H -0.249 1.249 21 H -0.268 1.268 22 C -0.116 4.116 23 C -0.084 4.084 24 C -0.153 4.153 25 C -0.106 4.106 26 C -0.136 4.136 27 C 0.089 3.911 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.423 0.577 44 H 0.163 0.837 45 H 0.150 0.850 46 H 0.188 0.812 47 H 0.080 0.920 48 H 0.393 0.607 49 H 0.126 0.874 50 H 0.140 0.860 51 H 0.147 0.853 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.641 7.117 5.118 9.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.276 2.724 3 C -0.557 4.557 4 C -0.572 4.572 5 C -0.570 4.570 6 S -0.051 6.051 7 C -0.244 4.244 8 C 0.015 3.985 9 N -0.363 5.363 10 C 0.275 3.725 11 O -0.450 6.450 12 C -0.034 4.034 13 N -0.152 5.152 14 C -0.065 4.065 15 C -0.190 4.190 16 C -0.164 4.164 17 O -0.379 6.379 18 Si 0.809 3.191 19 H -0.175 1.175 20 H -0.172 1.172 21 H -0.192 1.192 22 C -0.121 4.121 23 C -0.102 4.102 24 C -0.172 4.172 25 C -0.125 4.125 26 C -0.156 4.156 27 C -0.016 4.016 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.261 0.739 44 H 0.181 0.819 45 H 0.167 0.833 46 H 0.204 0.796 47 H 0.098 0.902 48 H 0.242 0.758 49 H 0.144 0.856 50 H 0.158 0.842 51 H 0.165 0.835 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.672 7.238 4.053 9.072 hybrid contribution 0.526 0.020 0.759 0.924 sum 4.199 7.258 4.812 9.668 Atomic orbital electron populations 1.26333 1.22225 1.04131 1.04414 0.77808 0.65331 0.66272 0.62995 1.26089 1.06693 1.17782 1.05100 1.26342 1.06489 1.08118 1.16266 1.28213 1.09807 0.97688 1.21318 1.87271 1.74790 1.16111 1.26895 1.23545 1.04701 0.97774 0.98424 1.20821 0.99070 0.92985 0.85576 1.45751 1.52908 1.16187 1.21487 1.21563 0.80329 0.81664 0.88964 1.90830 1.38469 1.58609 1.57124 1.21977 1.03438 0.82053 0.95980 1.43385 1.21932 1.04768 1.45075 1.21893 0.89827 0.96218 0.98596 1.19886 0.98288 0.92796 1.08019 1.24255 0.91294 1.04130 0.96731 1.86536 1.37498 1.77872 1.35964 0.85233 0.79351 0.78394 0.76157 1.17489 1.17191 1.19208 1.19358 0.96489 0.93653 1.02567 1.20481 0.97041 0.94785 0.97940 1.20946 0.95652 1.00248 1.00332 1.21157 1.00330 0.91435 0.99580 1.20249 0.96089 0.98254 1.01052 1.18457 0.96938 0.85716 1.00521 0.91037 0.91271 0.91922 0.90587 0.90738 0.90569 0.91979 0.91244 0.91012 0.87203 0.87397 0.87668 0.87835 0.92464 0.92255 0.73866 0.81920 0.83288 0.79556 0.90159 0.75777 0.85610 0.84180 0.83540 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.85 8.65 113.37 0.98 1.83 16 2 Si 1.09 -6.59 12.30 68.60 0.84 -5.75 16 3 C -0.45 2.78 8.65 113.37 0.98 3.76 16 4 C -0.47 0.82 8.65 113.37 0.98 1.80 16 5 C -0.38 2.18 5.14 113.37 0.58 2.77 16 6 S -0.28 -0.04 20.84 -56.49 -1.18 -1.22 16 7 C -0.10 0.47 6.05 71.98 0.44 0.91 16 8 C 0.14 0.00 5.68 86.38 0.49 0.49 16 9 N -0.71 3.15 5.56 -463.07 -2.57 0.57 16 10 C 0.49 1.12 7.90 87.66 0.69 1.82 16 11 O -0.57 -8.82 16.42 -3.03 -0.05 -8.87 16 12 C 0.09 -0.40 6.48 85.63 0.56 0.15 16 13 N -0.47 -2.51 2.27 -520.00 -1.18 -3.69 16 14 C 0.06 0.37 9.89 83.00 0.82 1.19 16 15 C -0.18 -1.74 5.61 -18.63 -0.10 -1.84 16 16 C -0.05 -0.24 3.05 71.23 0.22 -0.02 16 17 O -0.57 -3.88 12.86 -148.98 -1.92 -5.79 16 18 Si 0.99 0.18 26.08 68.60 1.79 1.97 16 19 H -0.25 0.10 7.11 99.48 0.71 0.80 16 20 H -0.25 0.05 7.11 99.48 0.71 0.76 16 21 H -0.27 -0.75 7.03 99.48 0.70 -0.05 16 22 C -0.12 -1.43 6.35 -20.20 -0.13 -1.56 16 23 C -0.08 -0.85 10.05 22.23 0.22 -0.63 16 24 C -0.15 -1.09 9.97 22.03 0.22 -0.87 16 25 C -0.11 -0.63 10.01 22.30 0.22 -0.40 16 26 C -0.14 -0.96 10.00 22.37 0.22 -0.73 16 27 C 0.09 0.88 6.80 39.03 0.27 1.15 16 28 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 29 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 30 H 0.06 0.07 7.96 -2.38 -0.02 0.05 16 31 H 0.07 -0.51 7.96 -2.39 -0.02 -0.53 16 32 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 33 H 0.08 -0.52 7.96 -2.39 -0.02 -0.54 16 34 H 0.06 0.07 7.96 -2.39 -0.02 0.05 16 35 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 36 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 37 H 0.11 -0.89 7.96 -2.39 -0.02 -0.91 16 38 H 0.11 -0.84 7.96 -2.39 -0.02 -0.86 16 39 H 0.10 -0.86 8.14 -2.39 -0.02 -0.88 16 40 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 41 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 43 H 0.42 -5.53 8.47 -92.70 -0.79 -6.32 16 44 H 0.16 -2.08 8.12 -2.39 -0.02 -2.10 16 45 H 0.15 -1.57 8.14 -2.39 -0.02 -1.59 16 46 H 0.19 0.04 6.29 -2.91 -0.02 0.02 16 47 H 0.08 0.10 7.96 -2.39 -0.02 0.08 16 48 H 0.39 -1.31 8.74 -74.06 -0.65 -1.95 16 49 H 0.13 0.96 8.06 -2.91 -0.02 0.94 16 50 H 0.14 0.33 8.06 -2.91 -0.02 0.30 16 51 H 0.15 0.07 8.06 -2.91 -0.02 0.05 16 52 H 0.13 0.27 8.06 -2.91 -0.02 0.25 16 Total: 0.00 -30.42 446.64 3.62 -26.80 By element: Atomic # 1 Polarization: -14.07 SS G_CDS: 0.22 Total: -13.85 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 7.66 Total: 9.82 kcal Atomic # 7 Polarization: 0.64 SS G_CDS: -3.75 Total: -3.12 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -1.97 Total: -14.66 kcal Atomic # 14 Polarization: -6.41 SS G_CDS: 2.63 Total: -3.78 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -1.18 Total: -1.22 kcal Total: -30.42 3.62 -26.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.426 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds