Wall clock time and date at job start Tue Mar 9 2021 15:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00153 * 2 1 4 4 C 1.34778 * 120.00043 * 179.97438 * 2 1 3 5 5 O 1.21287 * 120.00036 * 4.82996 * 4 2 1 6 6 C 1.50699 * 120.00246 * 184.82829 * 4 2 1 7 7 H 1.08999 * 109.47050 * 309.83906 * 6 4 2 8 8 C 1.53001 * 109.47153 * 69.83785 * 6 4 2 9 9 C 1.52997 * 109.47293 * 180.02562 * 8 6 4 10 10 C 1.53005 * 109.47140 * 300.00209 * 9 8 6 11 11 H 1.08999 * 109.46999 * 299.99857 * 10 9 8 12 12 N 1.46495 * 109.46924 * 179.97438 * 10 9 8 13 13 C 1.34780 * 120.00161 * 85.00340 * 12 10 9 14 14 O 1.21288 * 119.99858 * 359.97438 * 13 12 10 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 10 16 16 N 1.46496 * 109.46907 * 179.97438 * 15 13 12 17 17 C 1.36839 * 125.06737 * 265.02667 * 16 15 13 18 18 C 1.34231 * 109.94134 * 179.73970 * 17 16 15 19 19 C 1.50701 * 126.50432 * 180.30120 * 18 17 16 20 20 O 1.42906 * 109.47192 * 104.96835 * 19 18 17 21 21 Si 1.86306 * 109.46578 * 344.97065 * 19 18 17 22 22 C 1.46492 * 106.99762 * 0.25961 * 18 17 16 23 23 C 1.39590 * 134.03662 * 180.02562 * 22 18 17 24 24 C 1.36659 * 119.77040 * 179.97438 * 23 22 18 25 25 C 1.38789 * 120.52212 * 359.97438 * 24 23 22 26 26 C 1.37792 * 120.66982 * 0.02562 * 25 24 23 27 27 C 1.37695 * 125.06064 * 85.23278 * 16 15 13 28 28 C 1.53004 * 109.46915 * 59.99972 * 10 9 8 29 29 C 1.52998 * 109.47132 * 299.99587 * 28 10 9 30 30 H 1.09001 * 109.47705 * 239.99885 * 1 2 3 31 31 H 1.09004 * 109.47220 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.47263 * 119.99803 * 1 2 3 33 33 H 1.08992 * 109.46985 * 263.30854 * 3 2 1 34 34 H 1.08996 * 109.46683 * 23.31044 * 3 2 1 35 35 H 1.08998 * 109.47025 * 143.31091 * 3 2 1 36 36 H 1.08996 * 109.47074 * 300.00524 * 8 6 4 37 37 H 1.08999 * 109.47044 * 60.00117 * 8 6 4 38 38 H 1.08996 * 109.47085 * 180.02562 * 9 8 6 39 39 H 1.08999 * 109.47058 * 60.00030 * 9 8 6 40 40 H 0.96999 * 120.00369 * 264.99317 * 12 10 9 41 41 H 1.08998 * 109.46678 * 59.99997 * 15 13 12 42 42 H 1.08990 * 109.47018 * 299.99707 * 15 13 12 43 43 H 1.08004 * 125.02613 * 359.97438 * 17 16 15 44 44 H 1.08993 * 109.47037 * 224.97280 * 19 18 17 45 45 H 0.96697 * 113.99501 * 180.02562 * 20 19 18 46 46 H 1.48505 * 109.99909 * 60.00365 * 21 19 18 47 47 H 1.48506 * 109.99664 * 181.31747 * 21 19 18 48 48 H 1.08001 * 120.11611 * 359.97438 * 23 22 18 49 49 H 1.07997 * 119.74033 * 179.97438 * 24 23 22 50 50 H 1.08004 * 119.66398 * 180.02562 * 25 24 23 51 51 H 1.07998 * 120.11086 * 180.02562 * 26 25 24 52 52 H 1.08998 * 109.46879 * 59.99980 * 28 10 9 53 53 H 1.09002 * 109.46533 * 180.02562 * 28 10 9 54 54 H 1.08998 * 109.47493 * 180.02562 * 29 28 10 55 55 H 1.08999 * 109.47422 * 300.00507 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5357 -2.2158 -0.0874 6 6 3.6419 -1.1695 0.1104 7 1 4.0607 -0.4794 -0.6220 8 6 4.0511 -0.7299 1.5176 9 6 5.5770 -0.7317 1.6289 10 6 6.1063 -2.1420 1.3611 11 1 5.6878 -2.8323 2.0934 12 7 7.5674 -2.1435 1.4671 13 6 8.1556 -2.2911 2.6708 14 8 7.4752 -2.4222 3.6662 15 6 9.6586 -2.2931 2.7798 16 7 10.0463 -2.4667 4.1818 17 6 10.3393 -1.4490 5.0483 18 6 10.6501 -1.9497 6.2543 19 6 11.0258 -1.1614 7.4826 20 8 9.9272 -1.1513 8.3965 21 14 11.4435 0.5873 6.9943 22 6 10.5538 -3.4077 6.1504 23 6 10.7527 -4.4596 7.0463 24 6 10.5770 -5.7489 6.6288 25 6 10.2017 -6.0212 5.3206 26 6 10.0001 -4.9983 4.4198 27 6 10.1739 -3.6786 4.8230 28 6 5.6971 -2.5815 -0.0462 29 6 4.1712 -2.5799 -0.1575 30 1 -0.3634 -0.5138 0.8899 31 1 -0.3634 1.0277 -0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 2.4829 1.5235 -1.0206 34 1 1.5618 2.0552 0.4067 35 1 3.0928 1.1713 0.6140 36 1 3.6743 0.2749 1.7082 37 1 3.6322 -1.4200 2.2500 38 1 5.8684 -0.4189 2.6316 39 1 5.9955 -0.0413 0.8966 40 1 8.1116 -2.0384 0.6711 41 1 10.0510 -1.3462 2.4092 42 1 10.0648 -3.1120 2.1861 43 1 10.3196 -0.3981 4.7996 44 1 11.8909 -1.6220 7.9593 45 1 10.0985 -0.6603 9.2118 46 1 10.2719 1.2265 6.3430 47 1 11.8464 1.3667 8.1924 48 1 11.0444 -4.2552 8.0659 49 1 10.7314 -6.5623 7.3222 50 1 10.0663 -7.0454 5.0056 51 1 9.7078 -5.2205 3.4041 52 1 6.1156 -1.8911 -0.7785 53 1 6.0738 -3.5865 -0.2368 54 1 3.8796 -2.8934 -1.1599 55 1 3.7527 -3.2702 0.5749 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310356_9818708.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:22:32 Heat of formation + Delta-G solvation = -29.432856 kcal Electronic energy + Delta-G solvation = -36160.768531 eV Core-core repulsion = 31550.936885 eV Total energy + Delta-G solvation = -4609.831646 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.204 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.52600 -41.61198 -40.71431 -38.76186 -38.08115 -37.68595 -36.71303 -35.35527 -34.19140 -31.99576 -31.79104 -30.98990 -30.27591 -29.09955 -28.54666 -27.17685 -25.73674 -24.10116 -23.88522 -23.58612 -22.57818 -21.58384 -21.25617 -20.52489 -20.19180 -18.58233 -18.48775 -18.18218 -17.98157 -17.71019 -17.36616 -16.93259 -16.82492 -16.43988 -16.31469 -15.89119 -15.77535 -15.32635 -15.13909 -15.00994 -14.89792 -14.84355 -14.74276 -14.45551 -14.30271 -14.11309 -13.93477 -13.73328 -13.63273 -13.52754 -13.49001 -13.20772 -13.16242 -12.74083 -12.71613 -12.65760 -12.56849 -12.51611 -12.36193 -12.14311 -12.09157 -11.71561 -11.58436 -11.39878 -11.15264 -10.80454 -10.53382 -10.34116 -10.14492 -9.75344 -9.15473 -8.62615 -4.89760 0.14028 0.63939 1.32496 1.39672 1.47631 1.48818 1.62822 1.73783 1.98408 1.99489 2.19862 2.93457 3.37702 3.52578 3.56652 3.57974 3.62405 3.74953 3.80659 3.84846 3.93989 4.02166 4.06381 4.12518 4.16837 4.19829 4.22926 4.26689 4.28319 4.33008 4.37610 4.41224 4.41344 4.42374 4.55967 4.57048 4.67234 4.71558 4.75971 4.79521 4.81058 4.84320 4.90081 4.93838 5.02019 5.10180 5.11891 5.14440 5.22477 5.28021 5.44603 5.45507 5.51139 5.66018 5.73290 5.75914 6.18913 6.24500 6.27063 6.51037 6.68106 7.05945 7.18103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.623 5.623 3 C 0.059 3.941 4 C 0.504 3.496 5 O -0.589 6.589 6 C -0.096 4.096 7 H 0.130 0.870 8 C -0.107 4.107 9 C -0.117 4.117 10 C 0.145 3.855 11 H 0.050 0.950 12 N -0.705 5.705 13 C 0.489 3.511 14 O -0.576 6.576 15 C 0.088 3.912 16 N -0.466 5.466 17 C 0.075 3.925 18 C -0.183 4.183 19 C -0.060 4.060 20 O -0.566 6.566 21 Si 0.784 3.216 22 C -0.118 4.118 23 C -0.088 4.088 24 C -0.154 4.154 25 C -0.108 4.108 26 C -0.134 4.134 27 C 0.090 3.910 28 C -0.111 4.111 29 C -0.097 4.097 30 H 0.045 0.955 31 H 0.106 0.894 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.041 0.959 38 H 0.049 0.951 39 H 0.101 0.899 40 H 0.423 0.577 41 H 0.168 0.832 42 H 0.147 0.853 43 H 0.195 0.805 44 H 0.078 0.922 45 H 0.389 0.611 46 H -0.288 1.288 47 H -0.287 1.287 48 H 0.121 0.879 49 H 0.138 0.862 50 H 0.145 0.855 51 H 0.133 0.867 52 H 0.104 0.896 53 H 0.078 0.922 54 H 0.071 0.929 55 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.074 7.737 -8.239 13.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.356 5.356 3 C -0.082 4.082 4 C 0.294 3.706 5 O -0.470 6.470 6 C -0.117 4.117 7 H 0.148 0.852 8 C -0.145 4.145 9 C -0.155 4.155 10 C 0.040 3.960 11 H 0.068 0.932 12 N -0.358 5.358 13 C 0.274 3.726 14 O -0.454 6.454 15 C -0.036 4.036 16 N -0.148 5.148 17 C -0.050 4.050 18 C -0.190 4.190 19 C -0.167 4.167 20 O -0.375 6.375 21 Si 0.688 3.312 22 C -0.122 4.122 23 C -0.106 4.106 24 C -0.173 4.173 25 C -0.127 4.127 26 C -0.154 4.154 27 C -0.015 4.015 28 C -0.149 4.149 29 C -0.136 4.136 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.119 0.881 40 H 0.261 0.739 41 H 0.185 0.815 42 H 0.165 0.835 43 H 0.212 0.788 44 H 0.096 0.904 45 H 0.239 0.761 46 H -0.216 1.216 47 H -0.213 1.213 48 H 0.139 0.861 49 H 0.156 0.844 50 H 0.163 0.837 51 H 0.151 0.849 52 H 0.123 0.877 53 H 0.097 0.903 54 H 0.090 0.910 55 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.721 7.661 -8.289 12.654 hybrid contribution -1.166 -0.518 1.391 1.888 sum 4.555 7.143 -6.898 10.925 Atomic orbital electron populations 1.21722 0.79108 1.03916 1.01201 1.47981 1.07541 1.07264 1.72817 1.22387 0.98404 0.83745 1.03681 1.21342 0.91417 0.82872 0.74992 1.90691 1.71655 1.33193 1.51440 1.21381 0.89436 1.00535 1.00332 0.85214 1.21566 0.96413 1.02420 0.94100 1.21818 0.94254 0.97014 1.02425 1.20927 0.79780 0.97131 0.98175 0.93199 1.45829 1.07317 1.73460 1.09201 1.21549 0.91737 0.75802 0.83498 1.90826 1.66401 1.50010 1.38157 1.22026 0.90880 1.10005 0.80727 1.43402 1.57488 1.03669 1.10278 1.21924 0.99886 0.94001 0.89203 1.19761 1.13287 0.91449 0.94513 1.24510 0.90943 1.11544 0.89726 1.86629 1.40740 1.77134 1.32991 0.94234 0.83323 0.70498 0.83181 1.19378 1.05479 0.93720 0.93633 1.20446 0.99472 0.91916 0.98782 1.20921 1.02843 0.96507 0.96992 1.21140 0.99021 0.99426 0.93154 1.20251 1.05141 0.88966 1.01076 1.18407 1.03041 0.87674 0.92343 1.21733 0.94640 1.03526 0.95000 1.21263 0.95281 0.94762 1.02276 0.93579 0.87555 0.93261 0.90760 0.89062 0.89105 0.88843 0.93972 0.93195 0.88091 0.73877 0.81492 0.83540 0.78841 0.90402 0.76146 1.21569 1.21342 0.86123 0.84445 0.83679 0.84882 0.87731 0.90334 0.91004 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.04 10.17 127.77 1.30 1.34 16 2 N -0.62 -0.35 3.27 -871.90 -2.85 -3.20 16 3 C 0.06 -0.49 9.84 127.77 1.26 0.77 16 4 C 0.50 2.88 6.94 87.66 0.61 3.49 16 5 O -0.59 -9.33 15.99 -3.05 -0.05 -9.38 16 6 C -0.10 0.19 1.71 -11.54 -0.02 0.17 16 7 H 0.13 -1.10 7.67 -2.39 -0.02 -1.12 16 8 C -0.11 0.22 4.90 30.59 0.15 0.37 16 9 C -0.12 0.44 5.49 30.59 0.17 0.61 16 10 C 0.14 -0.36 2.45 45.00 0.11 -0.25 16 11 H 0.05 0.32 7.58 -2.39 -0.02 0.30 16 12 N -0.70 4.73 5.08 -442.52 -2.25 2.48 16 13 C 0.49 0.13 7.86 87.66 0.69 0.82 16 14 O -0.58 -7.82 16.09 -3.05 -0.05 -7.87 16 15 C 0.09 -0.57 6.48 85.63 0.56 -0.01 16 16 N -0.47 -1.60 2.27 -520.02 -1.18 -2.78 16 17 C 0.08 0.30 9.89 83.00 0.82 1.12 16 18 C -0.18 -1.53 5.61 -18.63 -0.10 -1.63 16 19 C -0.06 -0.27 3.05 71.24 0.22 -0.05 16 20 O -0.57 -4.90 12.86 -148.98 -1.92 -6.82 16 21 Si 0.78 -0.92 30.79 68.60 2.11 1.19 16 22 C -0.12 -1.39 6.35 -20.20 -0.13 -1.52 16 23 C -0.09 -0.92 10.05 22.23 0.22 -0.70 16 24 C -0.15 -1.16 9.97 22.03 0.22 -0.94 16 25 C -0.11 -0.66 10.01 22.30 0.22 -0.44 16 26 C -0.13 -0.89 10.00 22.37 0.22 -0.67 16 27 C 0.09 0.81 6.81 39.03 0.27 1.08 16 28 C -0.11 0.72 5.39 30.59 0.16 0.88 16 29 C -0.10 0.01 4.55 30.60 0.14 0.15 16 30 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.11 -0.64 7.71 -2.39 -0.02 -0.66 16 32 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.07 -0.78 8.14 -2.39 -0.02 -0.80 16 34 H 0.09 -0.98 7.78 -2.39 -0.02 -0.99 16 35 H 0.09 -0.94 4.36 -2.39 -0.01 -0.95 16 36 H 0.09 -0.49 5.45 -2.39 -0.01 -0.51 16 37 H 0.04 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 40 H 0.42 -6.44 8.60 -92.71 -0.80 -7.23 16 41 H 0.17 -2.59 8.12 -2.39 -0.02 -2.60 16 42 H 0.15 -1.76 8.14 -2.39 -0.02 -1.78 16 43 H 0.19 -0.52 6.30 -2.91 -0.02 -0.54 16 44 H 0.08 0.15 7.96 -2.39 -0.02 0.13 16 45 H 0.39 -0.14 8.74 -74.06 -0.65 -0.79 16 46 H -0.29 -1.21 7.04 99.48 0.70 -0.51 16 47 H -0.29 -0.83 7.11 99.48 0.71 -0.12 16 48 H 0.12 1.04 8.06 -2.91 -0.02 1.02 16 49 H 0.14 0.43 8.06 -2.91 -0.02 0.40 16 50 H 0.15 0.13 8.06 -2.91 -0.02 0.10 16 51 H 0.13 0.22 8.06 -2.91 -0.02 0.20 16 52 H 0.10 -1.29 8.14 -2.39 -0.02 -1.31 16 53 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 54 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 55 H 0.04 0.29 7.99 -2.39 -0.02 0.27 16 Total: 0.00 -40.66 439.95 0.40 -40.26 By element: Atomic # 1 Polarization: -17.97 SS G_CDS: -0.50 Total: -18.47 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 7.08 Total: 4.59 kcal Atomic # 7 Polarization: 2.78 SS G_CDS: -6.28 Total: -3.50 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -2.01 Total: -24.07 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: 2.11 Total: 1.19 kcal Total: -40.66 0.40 -40.26 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310356_9818708.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.828 kcal (2) G-P(sol) polarization free energy of solvation -40.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds