Wall clock time and date at job start Tue Mar 9 2021 13:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53006 * 109.12221 * 169.52061 * 6 5 4 8 8 N 1.46498 * 109.47111 * 66.45429 * 7 6 5 9 9 C 1.34770 * 119.99690 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00430 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99929 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.47265 * 180.02562 * 11 9 8 13 13 O 1.42894 * 109.47191 * 179.97438 * 12 11 9 14 14 C 1.35905 * 117.00185 * 179.97438 * 13 12 11 15 15 C 1.38706 * 120.05381 * 359.73035 * 14 13 12 16 16 C 1.38170 * 119.94081 * 179.72049 * 15 14 13 17 17 C 1.38240 * 120.05567 * 0.57105 * 16 15 14 18 18 C 1.38278 * 120.11246 * 359.68452 * 17 16 15 19 19 C 1.50705 * 119.97350 * 180.02562 * 18 17 16 20 20 O 1.42898 * 109.46957 * 245.01825 * 19 18 17 21 21 Si 1.86297 * 109.46751 * 5.02022 * 19 18 17 22 22 H 1.48501 * 109.47216 * 60.00259 * 21 19 18 23 23 H 1.48504 * 109.46903 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47091 * 299.99740 * 21 19 18 25 25 C 1.38126 * 120.05927 * 0.03973 * 18 17 16 26 26 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 27 27 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 28 28 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 29 29 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 31 31 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 33 33 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 34 34 H 1.08994 * 111.42616 * 20.77348 * 4 2 1 35 35 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 36 36 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 37 37 H 1.09004 * 109.12533 * 288.65800 * 6 5 4 38 38 H 1.09007 * 109.46549 * 186.45308 * 7 6 5 39 39 H 1.08996 * 109.46988 * 306.45158 * 7 6 5 40 40 H 0.96998 * 120.00135 * 359.97438 * 8 7 6 41 41 H 1.09004 * 109.46485 * 299.99673 * 11 9 8 42 42 H 1.08995 * 109.47046 * 59.99428 * 11 9 8 43 43 H 1.08996 * 109.46906 * 299.99835 * 12 11 9 44 44 H 1.09006 * 109.47246 * 59.99724 * 12 11 9 45 45 H 1.08001 * 120.03117 * 0.02562 * 15 14 13 46 46 H 1.08001 * 119.96993 * 180.27912 * 16 15 14 47 47 H 1.08000 * 119.94167 * 179.69810 * 17 16 15 48 48 H 1.09001 * 109.47103 * 125.02154 * 19 18 17 49 49 H 0.96705 * 113.99930 * 60.00107 * 20 19 18 50 50 H 1.07998 * 120.03377 * 180.02562 * 25 18 17 51 51 H 1.08995 * 111.07416 * 213.38000 * 26 6 5 52 52 H 1.08996 * 111.09205 * 89.35608 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4523 -2.6583 -1.5002 8 7 4.9920 -3.8815 -0.9014 9 6 6.0644 -4.4847 -1.4515 10 8 6.5829 -4.0145 -2.4419 11 6 6.6192 -5.7434 -0.8358 12 6 7.8261 -6.2188 -1.6471 13 8 8.3525 -7.4120 -1.0630 14 6 9.4349 -7.9691 -1.6671 15 6 9.9756 -7.3827 -2.8019 16 6 11.0796 -7.9479 -3.4109 17 6 11.6380 -9.1034 -2.8970 18 6 11.0976 -9.6929 -1.7689 19 6 11.7093 -10.9522 -1.2110 20 8 10.7741 -12.0267 -1.3246 21 14 13.2532 -11.3687 -2.1668 22 1 14.2249 -10.2521 -2.0487 23 1 13.8556 -12.6100 -1.6175 24 1 12.9093 -11.5767 -3.5964 25 6 9.9975 -9.1287 -1.1530 26 6 2.5556 -1.0124 -1.4423 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.1907 2.2612 0.8899 31 1 3.6274 1.7027 -0.0005 32 1 2.1908 2.2612 -0.8900 33 1 2.9328 -0.3695 2.2392 34 1 1.8196 -1.7209 1.8253 35 1 4.5681 -1.0679 0.6057 36 1 4.0203 -2.6213 1.2792 37 1 2.5392 -3.0050 -0.5833 38 1 4.1426 -2.8616 -2.5254 39 1 5.2196 -1.8841 -1.4992 40 1 4.5779 -4.2569 -0.1086 41 1 6.9283 -5.5405 0.1896 42 1 5.8519 -6.5175 -0.8376 43 1 7.5174 -6.4215 -2.6726 44 1 8.5933 -5.4445 -1.6448 45 1 9.5370 -6.4824 -3.2063 46 1 11.5037 -7.4892 -4.2919 47 1 12.4980 -9.5463 -3.3773 48 1 11.9616 -10.7995 -0.1616 49 1 10.5042 -12.2188 -2.2331 50 1 9.5760 -9.5892 -0.2717 51 1 1.7543 -1.3787 -2.0838 52 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310366_4549614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:34:18 Heat of formation + Delta-G solvation = -140.174387 kcal Electronic energy + Delta-G solvation = -27529.790236 eV Core-core repulsion = 23617.092854 eV Total energy + Delta-G solvation = -3912.697381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.182 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.33758 -40.74835 -39.10357 -37.98842 -37.21884 -34.70408 -33.29575 -32.41349 -30.96403 -30.43261 -29.30174 -28.57751 -27.45630 -26.78957 -24.97452 -24.00269 -23.63780 -22.02582 -21.45082 -20.80815 -19.28715 -18.20592 -17.67377 -17.50146 -17.31970 -17.10722 -16.75298 -16.42115 -16.14418 -15.85923 -15.59120 -15.12808 -14.94257 -14.86542 -14.62378 -14.40700 -14.27401 -14.11724 -14.01315 -13.98248 -13.72929 -13.56881 -13.42679 -13.30519 -13.20534 -12.91999 -12.84786 -12.69663 -12.39998 -12.34419 -12.15200 -11.99412 -11.87746 -11.77819 -11.60065 -11.48458 -11.06129 -10.96385 -10.55602 -10.46944 -10.44359 -10.11404 -9.86785 -9.18761 0.26981 0.46172 1.15403 1.45410 1.50057 1.54344 1.56555 1.75182 1.77272 1.80611 1.93512 2.44193 2.53616 2.73272 3.48416 3.53427 3.65697 3.69422 3.82522 3.84498 3.89600 3.95841 3.98328 4.08731 4.24177 4.32168 4.37625 4.40800 4.42264 4.47373 4.57700 4.60523 4.62319 4.63161 4.64888 4.65451 4.66014 4.69492 4.75852 4.82721 4.93766 5.02079 5.03122 5.14563 5.26215 5.32029 5.33934 5.37713 5.43025 5.43783 5.45286 5.49209 5.73835 6.36811 6.43496 6.55812 7.12758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.967 3.033 3 C -0.443 4.443 4 C -0.398 4.398 5 C -0.115 4.115 6 C -0.094 4.094 7 C 0.124 3.876 8 N -0.729 5.729 9 C 0.518 3.482 10 O -0.540 6.540 11 C -0.142 4.142 12 C 0.075 3.925 13 O -0.316 6.316 14 C 0.133 3.867 15 C -0.202 4.202 16 C -0.073 4.073 17 C -0.164 4.164 18 C -0.083 4.083 19 C -0.081 4.081 20 O -0.537 6.537 21 Si 0.954 3.046 22 H -0.250 1.250 23 H -0.254 1.254 24 H -0.252 1.252 25 C -0.122 4.122 26 C -0.393 4.393 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.403 0.597 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.133 0.867 46 H 0.129 0.871 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.377 0.623 50 H 0.136 0.864 51 H 0.081 0.919 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.895 1.717 1.611 3.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.165 2.835 3 C -0.551 4.551 4 C -0.484 4.484 5 C -0.153 4.153 6 C -0.113 4.113 7 C 0.001 3.999 8 N -0.381 5.381 9 C 0.304 3.696 10 O -0.417 6.417 11 C -0.182 4.182 12 C -0.001 4.001 13 O -0.230 6.230 14 C 0.087 3.913 15 C -0.221 4.221 16 C -0.091 4.091 17 C -0.182 4.182 18 C -0.083 4.083 19 C -0.192 4.192 20 O -0.342 6.342 21 Si 0.777 3.223 22 H -0.174 1.174 23 H -0.179 1.179 24 H -0.176 1.176 25 C -0.141 4.141 26 C -0.479 4.479 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.237 0.763 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.150 0.850 46 H 0.147 0.853 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.224 0.776 50 H 0.154 0.846 51 H 0.100 0.900 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.836 1.839 1.237 2.877 hybrid contribution -0.620 0.160 -0.164 0.661 sum -2.456 1.999 1.073 3.343 Atomic orbital electron populations 1.26024 1.20024 1.04561 1.04505 0.80518 0.67360 0.67679 0.67953 1.26022 1.06636 1.17927 1.04537 1.26657 1.03662 1.08132 1.09947 1.21981 0.98452 1.00648 0.94201 1.21730 0.96163 0.98948 0.94453 1.21587 0.95381 0.85794 0.97149 1.46055 1.31710 1.28148 1.32204 1.20287 0.80103 0.85168 0.84002 1.90751 1.59387 1.65866 1.25690 1.21474 0.98651 0.96305 1.01756 1.22413 0.95301 0.85388 0.96992 1.85976 1.42782 1.40874 1.53345 1.18970 0.87233 0.93096 0.91973 1.21395 1.00046 1.02930 0.97734 1.20906 0.94515 0.94684 0.98956 1.20969 1.01691 0.97992 0.97552 1.20089 0.95861 0.97041 0.95349 1.25030 1.01175 0.85239 1.07757 1.86525 1.63796 1.51030 1.32858 0.85615 0.76414 0.81090 0.79158 1.17360 1.17851 1.17552 1.20241 0.97129 0.94527 1.02203 1.26630 1.05417 1.05318 1.10575 0.91176 0.91129 0.91083 0.91138 0.91077 0.91101 0.90335 0.90342 0.91471 0.91734 0.90386 0.91212 0.91208 0.76279 0.87491 0.87480 0.90935 0.90936 0.84967 0.85266 0.86039 0.86269 0.77599 0.84650 0.89992 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.05 8.65 101.05 0.87 1.92 16 2 Si 0.97 -3.47 13.35 -169.99 -2.27 -5.74 16 3 C -0.44 0.95 8.65 101.05 0.87 1.83 16 4 C -0.40 1.08 5.95 38.72 0.23 1.32 16 5 C -0.12 0.29 5.01 -24.87 -0.12 0.17 16 6 C -0.09 0.23 2.37 -89.07 -0.21 0.02 16 7 C 0.12 -0.09 4.92 -4.04 -0.02 -0.11 16 8 N -0.73 0.96 5.36 -60.29 -0.32 0.64 16 9 C 0.52 0.45 7.83 -10.99 -0.09 0.37 16 10 O -0.54 -2.69 15.98 5.56 0.09 -2.60 16 11 C -0.14 0.18 6.07 -27.88 -0.17 0.01 16 12 C 0.07 0.06 4.03 37.16 0.15 0.21 16 13 O -0.32 -0.71 10.14 -19.44 -0.20 -0.90 16 14 C 0.13 0.34 6.69 -39.22 -0.26 0.08 16 15 C -0.20 -0.37 9.04 -39.43 -0.36 -0.73 16 16 C -0.07 -0.08 10.04 -39.61 -0.40 -0.48 16 17 C -0.16 -0.18 8.66 -39.57 -0.34 -0.52 16 18 C -0.08 -0.11 5.35 -104.65 -0.56 -0.67 16 19 C -0.08 -0.01 2.80 36.01 0.10 0.09 16 20 O -0.54 -0.42 12.83 -35.23 -0.45 -0.88 16 21 Si 0.95 -0.26 25.14 -169.99 -4.27 -4.54 16 22 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 23 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 24 H -0.25 0.04 7.04 56.52 0.40 0.44 16 25 C -0.12 -0.27 9.62 -39.43 -0.38 -0.65 16 26 C -0.39 1.04 5.28 38.41 0.20 1.24 16 27 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 28 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 29 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 33 H 0.08 -0.19 8.06 -51.93 -0.42 -0.61 16 34 H 0.08 -0.21 8.06 -51.93 -0.42 -0.63 16 35 H 0.07 -0.14 8.05 -51.93 -0.42 -0.56 16 36 H 0.06 -0.19 7.54 -51.93 -0.39 -0.58 16 37 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 38 H 0.07 0.04 8.13 -51.92 -0.42 -0.39 16 39 H 0.07 0.02 8.08 -51.93 -0.42 -0.40 16 40 H 0.40 -1.56 7.83 -40.82 -0.32 -1.88 16 41 H 0.11 -0.29 8.14 -51.93 -0.42 -0.71 16 42 H 0.11 -0.29 8.14 -51.93 -0.42 -0.71 16 43 H 0.07 0.08 7.61 -51.93 -0.39 -0.31 16 44 H 0.07 0.08 7.63 -51.93 -0.40 -0.31 16 45 H 0.13 0.12 6.30 -52.49 -0.33 -0.21 16 46 H 0.13 -0.11 8.06 -52.49 -0.42 -0.54 16 47 H 0.12 -0.03 4.86 -52.49 -0.25 -0.29 16 48 H 0.12 -0.09 7.96 -51.93 -0.41 -0.50 16 49 H 0.38 -0.89 8.70 45.56 0.40 -0.50 16 50 H 0.14 0.24 8.06 -52.49 -0.42 -0.18 16 51 H 0.08 -0.22 8.04 -51.93 -0.42 -0.64 16 52 H 0.08 -0.19 7.85 -51.93 -0.41 -0.60 16 LS Contribution 418.02 15.07 6.30 6.30 Total: 0.00 -7.27 418.02 -10.02 -17.30 By element: Atomic # 1 Polarization: -5.26 SS G_CDS: -8.42 Total: -13.68 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -0.48 Total: 4.11 kcal Atomic # 7 Polarization: 0.96 SS G_CDS: -0.32 Total: 0.64 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -0.56 Total: -4.38 kcal Atomic # 14 Polarization: -3.73 SS G_CDS: -6.54 Total: -10.28 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -7.27 -10.02 -17.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_4549614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.878 kcal (2) G-P(sol) polarization free energy of solvation -7.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds