Wall clock time and date at job start Tue Mar 9 2021 13:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53006 * 109.12221 * 169.52061 * 6 5 4 8 8 N 1.46498 * 109.47111 * 66.45429 * 7 6 5 9 9 C 1.34770 * 119.99690 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00430 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99929 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.47265 * 180.02562 * 11 9 8 13 13 O 1.42894 * 109.47191 * 179.97438 * 12 11 9 14 14 C 1.35905 * 117.00185 * 179.97438 * 13 12 11 15 15 C 1.38706 * 120.05381 * 359.73035 * 14 13 12 16 16 C 1.38170 * 119.94081 * 179.72049 * 15 14 13 17 17 C 1.38240 * 120.05567 * 0.57105 * 16 15 14 18 18 C 1.38278 * 120.11246 * 359.68452 * 17 16 15 19 19 C 1.50705 * 119.97350 * 180.02562 * 18 17 16 20 20 O 1.42898 * 109.46957 * 245.01825 * 19 18 17 21 21 Si 1.86297 * 109.46751 * 5.02022 * 19 18 17 22 22 H 1.48501 * 109.47216 * 60.00259 * 21 19 18 23 23 H 1.48504 * 109.46903 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47091 * 299.99740 * 21 19 18 25 25 C 1.38126 * 120.05927 * 0.03973 * 18 17 16 26 26 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 27 27 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 28 28 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 29 29 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 31 31 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 33 33 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 34 34 H 1.08994 * 111.42616 * 20.77348 * 4 2 1 35 35 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 36 36 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 37 37 H 1.09004 * 109.12533 * 288.65800 * 6 5 4 38 38 H 1.09007 * 109.46549 * 186.45308 * 7 6 5 39 39 H 1.08996 * 109.46988 * 306.45158 * 7 6 5 40 40 H 0.96998 * 120.00135 * 359.97438 * 8 7 6 41 41 H 1.09004 * 109.46485 * 299.99673 * 11 9 8 42 42 H 1.08995 * 109.47046 * 59.99428 * 11 9 8 43 43 H 1.08996 * 109.46906 * 299.99835 * 12 11 9 44 44 H 1.09006 * 109.47246 * 59.99724 * 12 11 9 45 45 H 1.08001 * 120.03117 * 0.02562 * 15 14 13 46 46 H 1.08001 * 119.96993 * 180.27912 * 16 15 14 47 47 H 1.08000 * 119.94167 * 179.69810 * 17 16 15 48 48 H 1.09001 * 109.47103 * 125.02154 * 19 18 17 49 49 H 0.96705 * 113.99930 * 60.00107 * 20 19 18 50 50 H 1.07998 * 120.03377 * 180.02562 * 25 18 17 51 51 H 1.08995 * 111.07416 * 213.38000 * 26 6 5 52 52 H 1.08996 * 111.09205 * 89.35608 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4523 -2.6583 -1.5002 8 7 4.9920 -3.8815 -0.9014 9 6 6.0644 -4.4847 -1.4515 10 8 6.5829 -4.0145 -2.4419 11 6 6.6192 -5.7434 -0.8358 12 6 7.8261 -6.2188 -1.6471 13 8 8.3525 -7.4120 -1.0630 14 6 9.4349 -7.9691 -1.6671 15 6 9.9756 -7.3827 -2.8019 16 6 11.0796 -7.9479 -3.4109 17 6 11.6380 -9.1034 -2.8970 18 6 11.0976 -9.6929 -1.7689 19 6 11.7093 -10.9522 -1.2110 20 8 10.7741 -12.0267 -1.3246 21 14 13.2532 -11.3687 -2.1668 22 1 14.2249 -10.2521 -2.0487 23 1 13.8556 -12.6100 -1.6175 24 1 12.9093 -11.5767 -3.5964 25 6 9.9975 -9.1287 -1.1530 26 6 2.5556 -1.0124 -1.4423 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.1907 2.2612 0.8899 31 1 3.6274 1.7027 -0.0005 32 1 2.1908 2.2612 -0.8900 33 1 2.9328 -0.3695 2.2392 34 1 1.8196 -1.7209 1.8253 35 1 4.5681 -1.0679 0.6057 36 1 4.0203 -2.6213 1.2792 37 1 2.5392 -3.0050 -0.5833 38 1 4.1426 -2.8616 -2.5254 39 1 5.2196 -1.8841 -1.4992 40 1 4.5779 -4.2569 -0.1086 41 1 6.9283 -5.5405 0.1896 42 1 5.8519 -6.5175 -0.8376 43 1 7.5174 -6.4215 -2.6726 44 1 8.5933 -5.4445 -1.6448 45 1 9.5370 -6.4824 -3.2063 46 1 11.5037 -7.4892 -4.2919 47 1 12.4980 -9.5463 -3.3773 48 1 11.9616 -10.7995 -0.1616 49 1 10.5042 -12.2188 -2.2331 50 1 9.5760 -9.5892 -0.2717 51 1 1.7543 -1.3787 -2.0838 52 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_4549614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:34:17 Heat of formation + Delta-G solvation = -134.469684 kcal Electronic energy + Delta-G solvation = -27529.542861 eV Core-core repulsion = 23617.092854 eV Total energy + Delta-G solvation = -3912.450007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.182 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.42533 -40.82442 -39.16923 -37.91828 -37.26009 -34.70013 -33.30714 -32.48637 -30.99642 -30.30667 -29.10741 -28.38144 -27.42736 -26.79348 -24.93841 -23.86856 -23.72331 -22.09541 -21.45704 -20.66767 -19.35340 -18.22801 -17.73706 -17.54744 -17.30995 -17.16340 -16.80658 -16.43534 -16.12833 -15.81605 -15.61175 -15.10041 -14.92458 -14.81140 -14.63476 -14.39599 -14.33203 -14.05057 -13.82529 -13.81171 -13.64028 -13.41346 -13.29401 -13.22323 -13.15353 -12.94958 -12.87526 -12.51917 -12.39385 -12.20506 -12.15161 -11.92630 -11.84607 -11.83152 -11.52515 -11.41231 -11.16485 -10.76405 -10.46260 -10.38024 -10.27981 -10.10861 -9.95942 -9.30361 0.17219 0.35328 1.16733 1.47689 1.50594 1.54932 1.67755 1.80037 1.93158 2.01715 2.04652 2.51196 2.63408 2.66606 3.50660 3.55810 3.67595 3.79122 3.83396 3.86687 3.94544 4.03050 4.07701 4.11840 4.17978 4.26810 4.38769 4.53730 4.54477 4.60868 4.63633 4.64870 4.66922 4.75599 4.79163 4.80766 4.82346 4.83209 4.85828 4.89218 4.95818 5.14322 5.21919 5.22591 5.32502 5.33990 5.37681 5.40132 5.52526 5.56559 5.62053 5.64183 5.66822 6.30356 6.44941 6.69157 7.13755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.035 2.965 3 C -0.461 4.461 4 C -0.406 4.406 5 C -0.118 4.118 6 C -0.088 4.088 7 C 0.124 3.876 8 N -0.715 5.715 9 C 0.516 3.484 10 O -0.587 6.587 11 C -0.133 4.133 12 C 0.074 3.926 13 O -0.322 6.322 14 C 0.117 3.883 15 C -0.212 4.212 16 C -0.077 4.077 17 C -0.170 4.170 18 C -0.084 4.084 19 C -0.082 4.082 20 O -0.551 6.551 21 Si 0.989 3.011 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.250 1.250 25 C -0.135 4.135 26 C -0.407 4.407 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.417 0.583 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.136 0.864 46 H 0.149 0.851 47 H 0.136 0.864 48 H 0.125 0.875 49 H 0.389 0.611 50 H 0.135 0.865 51 H 0.084 0.916 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.297 1.257 2.182 4.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.229 2.771 3 C -0.568 4.568 4 C -0.491 4.491 5 C -0.155 4.155 6 C -0.106 4.106 7 C 0.001 3.999 8 N -0.368 5.368 9 C 0.304 3.696 10 O -0.468 6.468 11 C -0.172 4.172 12 C -0.001 4.001 13 O -0.236 6.236 14 C 0.072 3.928 15 C -0.231 4.231 16 C -0.095 4.095 17 C -0.188 4.188 18 C -0.084 4.084 19 C -0.192 4.192 20 O -0.359 6.359 21 Si 0.813 3.187 22 H -0.181 1.181 23 H -0.200 1.200 24 H -0.174 1.174 25 C -0.154 4.154 26 C -0.492 4.492 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.255 0.745 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.153 0.847 46 H 0.166 0.834 47 H 0.153 0.847 48 H 0.143 0.857 49 H 0.238 0.762 50 H 0.153 0.847 51 H 0.103 0.897 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.273 1.382 1.827 3.227 hybrid contribution -0.503 0.323 -0.350 0.693 sum -2.776 1.705 1.476 3.577 Atomic orbital electron populations 1.26193 1.21223 1.04617 1.04350 0.79468 0.65613 0.65655 0.66373 1.26250 1.06575 1.19549 1.04388 1.26746 1.03693 1.08431 1.10258 1.21998 0.98441 1.00947 0.94130 1.21708 0.95419 0.99311 0.94200 1.21562 0.95760 0.85655 0.96970 1.45981 1.30912 1.27624 1.32275 1.20661 0.80072 0.85528 0.83380 1.90731 1.60929 1.67270 1.27876 1.21440 0.98202 0.95583 1.01992 1.22426 0.95830 0.84770 0.97082 1.85954 1.42805 1.41260 1.53579 1.19171 0.87619 0.93517 0.92474 1.21530 1.00501 1.03238 0.97794 1.21195 0.94159 0.94682 0.99445 1.21195 1.02077 0.98032 0.97509 1.20255 0.95520 0.97329 0.95306 1.25131 1.01165 0.84579 1.08358 1.86492 1.64016 1.51109 1.34241 0.85113 0.75300 0.79541 0.78702 1.18134 1.19953 1.17391 1.20356 0.97728 0.94741 1.02535 1.26798 1.05488 1.05632 1.11273 0.91415 0.91239 0.90919 0.91212 0.91464 0.91358 0.90431 0.89884 0.92027 0.91012 0.89301 0.92628 0.92503 0.74514 0.85533 0.85540 0.91763 0.91759 0.84665 0.83367 0.84666 0.85683 0.76170 0.84710 0.89748 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.35 8.65 113.37 0.98 3.33 16 2 Si 1.04 -7.74 13.35 68.60 0.92 -6.83 16 3 C -0.46 1.85 8.65 113.37 0.98 2.83 16 4 C -0.41 2.54 5.95 72.99 0.43 2.97 16 5 C -0.12 0.66 5.01 31.80 0.16 0.82 16 6 C -0.09 0.45 2.37 -9.79 -0.02 0.43 16 7 C 0.12 -0.09 4.92 86.38 0.43 0.34 16 8 N -0.72 1.92 5.36 -463.06 -2.48 -0.57 16 9 C 0.52 1.17 7.83 87.66 0.69 1.86 16 10 O -0.59 -6.82 15.98 -3.02 -0.05 -6.87 16 11 C -0.13 0.37 6.07 29.85 0.18 0.55 16 12 C 0.07 0.18 4.03 71.98 0.29 0.47 16 13 O -0.32 -1.66 10.14 -92.48 -0.94 -2.60 16 14 C 0.12 0.71 6.69 22.51 0.15 0.86 16 15 C -0.21 -0.94 9.04 22.37 0.20 -0.74 16 16 C -0.08 -0.17 10.04 22.25 0.22 0.05 16 17 C -0.17 -0.33 8.66 22.28 0.19 -0.14 16 18 C -0.08 -0.23 5.35 -19.88 -0.11 -0.33 16 19 C -0.08 -0.01 2.80 71.24 0.20 0.19 16 20 O -0.55 -0.80 12.83 -148.98 -1.91 -2.72 16 21 Si 0.99 -0.93 25.14 68.60 1.72 0.80 16 22 H -0.26 -0.06 7.11 99.48 0.71 0.65 16 23 H -0.27 -0.64 7.11 99.48 0.71 0.07 16 24 H -0.25 0.32 7.04 99.48 0.70 1.02 16 25 C -0.13 -0.69 9.62 22.37 0.22 -0.47 16 26 C -0.41 2.13 5.28 72.79 0.38 2.51 16 27 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 28 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 29 H 0.07 -0.38 7.96 -2.38 -0.02 -0.40 16 30 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 31 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 32 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 33 H 0.08 -0.44 8.06 -2.39 -0.02 -0.45 16 34 H 0.08 -0.56 8.06 -2.39 -0.02 -0.58 16 35 H 0.06 -0.26 8.05 -2.39 -0.02 -0.28 16 36 H 0.07 -0.50 7.54 -2.39 -0.02 -0.52 16 37 H 0.09 -0.62 8.14 -2.38 -0.02 -0.64 16 38 H 0.06 0.13 8.13 -2.38 -0.02 0.11 16 39 H 0.06 0.12 8.08 -2.39 -0.02 0.10 16 40 H 0.42 -3.67 7.83 -92.71 -0.73 -4.40 16 41 H 0.13 -0.83 8.14 -2.38 -0.02 -0.85 16 42 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 43 H 0.06 0.25 7.61 -2.39 -0.02 0.23 16 44 H 0.06 0.25 7.63 -2.38 -0.02 0.23 16 45 H 0.14 0.42 6.30 -2.91 -0.02 0.40 16 46 H 0.15 -0.34 8.06 -2.91 -0.02 -0.37 16 47 H 0.14 -0.19 4.86 -2.91 -0.01 -0.20 16 48 H 0.13 -0.19 7.96 -2.39 -0.02 -0.21 16 49 H 0.39 -1.92 8.70 -74.05 -0.64 -2.56 16 50 H 0.14 0.60 8.06 -2.91 -0.02 0.57 16 51 H 0.08 -0.47 8.04 -2.39 -0.02 -0.49 16 52 H 0.08 -0.30 7.85 -2.39 -0.02 -0.32 16 Total: 0.00 -17.51 418.02 3.12 -14.39 By element: Atomic # 1 Polarization: -11.44 SS G_CDS: 0.28 Total: -11.16 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 5.58 Total: 15.54 kcal Atomic # 7 Polarization: 1.92 SS G_CDS: -2.48 Total: -0.57 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -2.90 Total: -12.18 kcal Atomic # 14 Polarization: -8.67 SS G_CDS: 2.64 Total: -6.03 kcal Total: -17.51 3.12 -14.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_4549614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.082 kcal (2) G-P(sol) polarization free energy of solvation -17.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds