Wall clock time and date at job start Tue Mar 9 2021 13:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53006 * 109.12221 * 169.52061 * 6 5 4 8 8 N 1.46498 * 109.47111 * 66.45429 * 7 6 5 9 9 C 1.34770 * 119.99690 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00430 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99929 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.47265 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47195 * 179.97438 * 12 11 9 14 14 O 1.42901 * 109.47321 * 179.97438 * 13 12 11 15 15 C 1.35895 * 117.00095 * 179.97438 * 14 13 12 16 16 C 1.38714 * 120.05848 * 359.72754 * 15 14 13 17 17 C 1.38160 * 119.94579 * 179.71904 * 16 15 14 18 18 C 1.38243 * 120.05617 * 0.57496 * 17 16 15 19 19 C 1.38295 * 120.11258 * 359.67932 * 18 17 16 20 20 C 1.50691 * 119.97566 * 180.02562 * 19 18 17 21 21 O 1.42904 * 109.47281 * 245.02355 * 20 19 18 22 22 Si 1.86301 * 109.47139 * 5.01715 * 20 19 18 23 23 H 1.48502 * 109.47102 * 60.00069 * 22 20 19 24 24 H 1.48504 * 109.47238 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47173 * 300.00236 * 22 20 19 26 26 C 1.38120 * 120.05155 * 0.03980 * 19 18 17 27 27 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 28 28 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 29 29 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 30 30 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 32 32 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 34 34 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 35 35 H 1.08994 * 111.42616 * 20.77348 * 4 2 1 36 36 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 37 37 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 38 38 H 1.09004 * 109.12533 * 288.65800 * 6 5 4 39 39 H 1.09007 * 109.46549 * 186.45308 * 7 6 5 40 40 H 1.08996 * 109.46988 * 306.45158 * 7 6 5 41 41 H 0.96998 * 120.00135 * 359.97438 * 8 7 6 42 42 H 1.09004 * 109.46485 * 299.99673 * 11 9 8 43 43 H 1.08995 * 109.47046 * 59.99428 * 11 9 8 44 44 H 1.08996 * 109.46906 * 299.99835 * 12 11 9 45 45 H 1.09006 * 109.47246 * 59.99724 * 12 11 9 46 46 H 1.08996 * 109.47276 * 299.99874 * 13 12 11 47 47 H 1.08996 * 109.47119 * 59.99904 * 13 12 11 48 48 H 1.08005 * 120.02113 * 359.97438 * 16 15 14 49 49 H 1.08002 * 119.97286 * 180.27530 * 17 16 15 50 50 H 1.08001 * 119.94937 * 179.69967 * 18 17 16 51 51 H 1.09000 * 109.47710 * 125.01587 * 20 19 18 52 52 H 0.96702 * 114.00135 * 59.99069 * 21 20 19 53 53 H 1.08004 * 120.02949 * 179.97438 * 26 19 18 54 54 H 1.08995 * 111.07416 * 213.38000 * 27 6 5 55 55 H 1.08996 * 111.09205 * 89.35608 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4523 -2.6583 -1.5002 8 7 4.9920 -3.8815 -0.9014 9 6 6.0644 -4.4847 -1.4515 10 8 6.5829 -4.0145 -2.4419 11 6 6.6192 -5.7434 -0.8358 12 6 7.8261 -6.2188 -1.6471 13 6 8.3897 -7.4964 -1.0217 14 8 9.5166 -7.9408 -1.7797 15 6 10.1390 -9.0716 -1.3546 16 6 9.6782 -9.7366 -0.2278 17 6 10.3091 -10.8892 0.1989 18 6 11.4061 -11.3734 -0.4891 19 6 11.8707 -10.7095 -1.6097 20 6 13.0663 -11.2403 -2.3577 21 8 14.1430 -10.3059 -2.2595 22 14 13.5883 -12.8689 -1.6186 23 1 12.4695 -13.8400 -1.7205 24 1 14.7669 -13.3917 -2.3552 25 1 13.9449 -12.6727 -0.1904 26 6 11.2399 -9.5600 -2.0437 27 6 2.5556 -1.0124 -1.4423 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.1907 2.2612 0.8899 32 1 3.6274 1.7027 -0.0005 33 1 2.1908 2.2612 -0.8900 34 1 2.9328 -0.3695 2.2392 35 1 1.8196 -1.7209 1.8253 36 1 4.5681 -1.0679 0.6057 37 1 4.0203 -2.6213 1.2792 38 1 2.5392 -3.0050 -0.5833 39 1 4.1426 -2.8616 -2.5254 40 1 5.2196 -1.8841 -1.4992 41 1 4.5779 -4.2569 -0.1086 42 1 6.9283 -5.5405 0.1896 43 1 5.8519 -6.5175 -0.8376 44 1 7.5174 -6.4215 -2.6726 45 1 8.5933 -5.4445 -1.6448 46 1 8.6985 -7.2933 0.0037 47 1 7.6227 -8.2708 -1.0236 48 1 8.8244 -9.3557 0.3130 49 1 9.9480 -11.4098 1.0736 50 1 11.9009 -12.2719 -0.1511 51 1 12.8046 -11.3844 -3.4059 52 1 14.4290 -10.1291 -1.3528 53 1 11.6033 -9.0415 -2.9187 54 1 1.7543 -1.3787 -2.0838 55 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_4549616.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:34:29 Heat of formation + Delta-G solvation = -141.443956 kcal Electronic energy + Delta-G solvation = -29062.887900 eV Core-core repulsion = 24994.597847 eV Total energy + Delta-G solvation = -4068.290053 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.198 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.30584 -40.84112 -39.20337 -37.93535 -37.28751 -34.90870 -34.59043 -32.46327 -31.31514 -30.49305 -29.12049 -28.62531 -28.37637 -26.96512 -26.29417 -24.03291 -23.72631 -23.25925 -21.86027 -21.41485 -20.64859 -19.19540 -18.12805 -17.95719 -17.49360 -17.21835 -17.12175 -16.84275 -16.58832 -16.14858 -15.91418 -15.62519 -15.20874 -15.01783 -14.95405 -14.61060 -14.45839 -14.31919 -14.17013 -13.83721 -13.82616 -13.69742 -13.48611 -13.35062 -13.23838 -13.19785 -13.13493 -13.07172 -12.75102 -12.52051 -12.33535 -12.27348 -12.19520 -12.11783 -11.87773 -11.83643 -11.61331 -11.50248 -11.41015 -11.05915 -10.76626 -10.46198 -10.36883 -10.26567 -10.07425 -9.92878 -9.25429 0.20984 0.39027 1.16252 1.47533 1.54643 1.61361 1.75341 1.89558 1.99641 2.01718 2.04582 2.42470 2.66262 2.67157 3.51564 3.63981 3.69559 3.81485 3.84911 3.87736 3.96415 4.03224 4.08450 4.12509 4.21389 4.22750 4.35183 4.40375 4.46135 4.54469 4.55982 4.60493 4.64146 4.66791 4.70693 4.78769 4.80521 4.82181 4.83873 4.85969 4.89969 4.98661 5.00458 5.14593 5.15269 5.22150 5.27631 5.35220 5.36604 5.40870 5.43575 5.52967 5.56833 5.62266 5.64046 5.73166 6.42645 6.53903 6.68299 7.24931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.034 2.966 3 C -0.461 4.461 4 C -0.403 4.403 5 C -0.117 4.117 6 C -0.086 4.086 7 C 0.124 3.876 8 N -0.718 5.718 9 C 0.504 3.496 10 O -0.594 6.594 11 C -0.127 4.127 12 C -0.102 4.102 13 C 0.058 3.942 14 O -0.337 6.337 15 C 0.117 3.883 16 C -0.206 4.206 17 C -0.074 4.074 18 C -0.174 4.174 19 C -0.084 4.084 20 C -0.089 4.089 21 O -0.554 6.554 22 Si 0.995 3.005 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.246 1.246 26 C -0.147 4.147 27 C -0.409 4.409 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.417 0.583 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.154 0.846 49 H 0.156 0.844 50 H 0.136 0.864 51 H 0.119 0.881 52 H 0.389 0.611 53 H 0.122 0.878 54 H 0.083 0.917 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.900 -1.820 8.094 10.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.228 2.772 3 C -0.568 4.568 4 C -0.489 4.489 5 C -0.154 4.154 6 C -0.105 4.105 7 C 0.000 4.000 8 N -0.371 5.371 9 C 0.292 3.708 10 O -0.474 6.474 11 C -0.167 4.167 12 C -0.140 4.140 13 C -0.016 4.016 14 O -0.252 6.252 15 C 0.072 3.928 16 C -0.224 4.224 17 C -0.092 4.092 18 C -0.191 4.191 19 C -0.085 4.085 20 C -0.198 4.198 21 O -0.361 6.361 22 Si 0.818 3.182 23 H -0.179 1.179 24 H -0.202 1.202 25 H -0.170 1.170 26 C -0.166 4.166 27 C -0.494 4.494 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.255 0.745 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.102 0.898 47 H 0.102 0.898 48 H 0.171 0.829 49 H 0.173 0.827 50 H 0.153 0.847 51 H 0.137 0.863 52 H 0.238 0.762 53 H 0.140 0.860 54 H 0.102 0.898 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.346 -2.082 6.936 9.001 hybrid contribution -0.144 0.571 0.229 0.632 sum -5.490 -1.511 7.165 9.152 Atomic orbital electron populations 1.26180 1.21105 1.04654 1.04355 0.79491 0.65694 0.65638 0.66424 1.26256 1.06539 1.19623 1.04382 1.26720 1.03660 1.08393 1.10131 1.21988 0.98392 1.00981 0.94059 1.21700 0.95347 0.99252 0.94226 1.21511 0.95706 0.85957 0.96858 1.46028 1.31216 1.27566 1.32316 1.21240 0.79803 0.86289 0.83448 1.90731 1.61004 1.67426 1.28271 1.21537 0.98577 0.94916 1.01624 1.21149 0.97247 0.95720 0.99878 1.22986 0.86569 0.96569 0.95484 1.86056 1.44916 1.39587 1.54631 1.19224 0.92935 0.86701 0.93990 1.21585 1.04134 0.98751 0.97972 1.21258 0.93906 0.94621 0.99387 1.21212 0.99559 1.01665 0.96708 1.20215 0.97326 0.94898 0.96019 1.25216 0.85824 1.02994 1.05782 1.86496 1.50752 1.64838 1.34039 0.85043 0.79476 0.74262 0.79394 1.17855 1.20234 1.16995 1.20354 0.95973 0.98110 1.02132 1.26820 1.05440 1.05766 1.11349 0.91479 0.91163 0.90854 0.91137 0.91537 0.91435 0.90352 0.89714 0.92204 0.90803 0.89228 0.93104 0.92956 0.74535 0.85421 0.85419 0.92228 0.92233 0.89809 0.89820 0.82878 0.82678 0.84683 0.86270 0.76187 0.86034 0.89838 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.35 8.65 113.37 0.98 3.34 16 2 Si 1.03 -7.52 13.35 68.60 0.92 -6.61 16 3 C -0.46 1.69 8.65 113.37 0.98 2.67 16 4 C -0.40 2.64 5.95 72.99 0.43 3.08 16 5 C -0.12 0.66 5.01 31.80 0.16 0.82 16 6 C -0.09 0.42 2.37 -9.79 -0.02 0.39 16 7 C 0.12 0.04 4.92 86.38 0.43 0.47 16 8 N -0.72 1.76 5.36 -463.06 -2.48 -0.72 16 9 C 0.50 1.42 7.83 87.66 0.69 2.11 16 10 O -0.59 -8.43 15.98 -3.02 -0.05 -8.48 16 11 C -0.13 0.71 5.70 29.85 0.17 0.88 16 12 C -0.10 -0.09 4.87 30.59 0.15 0.05 16 13 C 0.06 -0.10 4.74 71.98 0.34 0.24 16 14 O -0.34 -2.18 10.14 -92.37 -0.94 -3.12 16 15 C 0.12 0.62 6.69 22.51 0.15 0.77 16 16 C -0.21 -0.03 9.04 22.37 0.20 0.17 16 17 C -0.07 0.09 10.04 22.25 0.22 0.31 16 18 C -0.17 -0.10 8.67 22.28 0.19 0.09 16 19 C -0.08 -0.26 5.35 -19.88 -0.11 -0.37 16 20 C -0.09 -0.11 2.80 71.23 0.20 0.09 16 21 O -0.55 -1.68 12.83 -148.98 -1.91 -3.59 16 22 Si 0.99 -0.89 25.14 68.60 1.72 0.83 16 23 H -0.25 0.06 7.11 99.48 0.71 0.77 16 24 H -0.28 -0.75 7.11 99.48 0.71 -0.05 16 25 H -0.25 0.47 7.04 99.48 0.70 1.17 16 26 C -0.15 -0.95 9.62 22.37 0.22 -0.74 16 27 C -0.41 1.86 5.28 72.79 0.38 2.24 16 28 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 29 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 30 H 0.07 -0.40 7.96 -2.38 -0.02 -0.41 16 31 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 32 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 33 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 34 H 0.08 -0.47 8.06 -2.39 -0.02 -0.49 16 35 H 0.08 -0.62 8.06 -2.39 -0.02 -0.64 16 36 H 0.06 -0.23 8.05 -2.39 -0.02 -0.25 16 37 H 0.07 -0.56 7.54 -2.39 -0.02 -0.58 16 38 H 0.09 -0.62 8.14 -2.38 -0.02 -0.64 16 39 H 0.05 0.20 8.13 -2.38 -0.02 0.18 16 40 H 0.05 0.19 8.08 -2.39 -0.02 0.17 16 41 H 0.42 -3.94 7.83 -92.71 -0.73 -4.66 16 42 H 0.13 -1.43 8.14 -2.38 -0.02 -1.45 16 43 H 0.13 -1.43 8.14 -2.39 -0.02 -1.44 16 44 H 0.06 0.33 8.10 -2.39 -0.02 0.31 16 45 H 0.06 0.33 8.10 -2.38 -0.02 0.31 16 46 H 0.08 -0.48 7.65 -2.39 -0.02 -0.50 16 47 H 0.08 -0.48 7.68 -2.39 -0.02 -0.50 16 48 H 0.15 -0.84 6.30 -2.91 -0.02 -0.86 16 49 H 0.16 -1.06 8.06 -2.91 -0.02 -1.09 16 50 H 0.14 -0.36 4.86 -2.91 -0.01 -0.38 16 51 H 0.12 0.05 7.96 -2.39 -0.02 0.03 16 52 H 0.39 -1.48 8.70 -74.06 -0.64 -2.12 16 53 H 0.12 0.98 8.06 -2.91 -0.02 0.96 16 54 H 0.08 -0.40 8.04 -2.39 -0.02 -0.42 16 55 H 0.07 -0.20 7.85 -2.39 -0.02 -0.22 16 Total: 0.00 -22.52 439.52 3.27 -19.25 By element: Atomic # 1 Polarization: -14.41 SS G_CDS: 0.25 Total: -14.17 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 5.77 Total: 16.61 kcal Atomic # 7 Polarization: 1.76 SS G_CDS: -2.48 Total: -0.72 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -2.90 Total: -15.19 kcal Atomic # 14 Polarization: -8.42 SS G_CDS: 2.64 Total: -5.78 kcal Total: -22.52 3.27 -19.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_4549616.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.197 kcal (2) G-P(sol) polarization free energy of solvation -22.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds