Wall clock time and date at job start Tue Mar 9 2021 13:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86298 * 111.24174 * 2 1 4 4 C 1.89338 * 111.45914 * 125.06523 * 2 1 3 5 5 C 1.55142 * 101.34667 * 120.85141 * 4 2 1 6 6 C 1.53573 * 111.29462 * 331.41516 * 5 4 2 7 7 C 1.52998 * 109.47298 * 169.06014 * 6 5 4 8 8 N 1.46506 * 109.47237 * 66.45247 * 7 6 5 9 9 C 1.34773 * 119.99969 * 179.72043 * 8 7 6 10 10 O 1.21281 * 120.00220 * 0.02562 * 9 8 7 11 11 C 1.50706 * 120.00080 * 180.02562 * 9 8 7 12 12 O 1.42898 * 109.47060 * 180.02562 * 11 9 8 13 13 C 1.35908 * 116.99594 * 179.97438 * 12 11 9 14 14 C 1.38712 * 120.05380 * 359.72730 * 13 12 11 15 15 C 1.38169 * 119.93893 * 179.74467 * 14 13 12 16 16 C 1.38242 * 120.05535 * 0.52560 * 15 14 13 17 17 C 1.50704 * 119.94322 * 179.72197 * 16 15 14 18 18 O 1.42902 * 109.47105 * 245.02328 * 17 16 15 19 19 Si 1.86295 * 109.46960 * 5.02790 * 17 16 15 20 20 H 1.48496 * 109.47451 * 59.99698 * 19 17 16 21 21 H 1.48500 * 109.47012 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47131 * 299.99430 * 19 17 16 23 23 C 1.38286 * 120.11463 * 359.74987 * 16 15 14 24 24 C 1.38123 * 120.05228 * 359.97438 * 23 16 15 25 25 N 1.48005 * 120.02938 * 180.02562 * 24 23 16 26 26 O 1.21806 * 119.99564 * 359.97438 * 25 24 23 27 27 O 1.21795 * 120.00187 * 179.97438 * 25 24 23 28 28 C 1.55911 * 109.50587 * 49.03701 * 6 5 4 29 29 H 1.09004 * 109.46992 * 294.93512 * 1 2 3 30 30 H 1.09002 * 109.46729 * 54.93504 * 1 2 3 31 31 H 1.08994 * 109.47456 * 174.93384 * 1 2 3 32 32 H 1.09005 * 109.47313 * 185.06353 * 3 2 1 33 33 H 1.09001 * 109.47335 * 305.06319 * 3 2 1 34 34 H 1.08997 * 109.47335 * 65.06423 * 3 2 1 35 35 H 1.08998 * 111.04506 * 2.83576 * 4 2 1 36 36 H 1.08998 * 111.08093 * 238.88692 * 4 2 1 37 37 H 1.09007 * 109.12357 * 210.92552 * 5 4 2 38 38 H 1.09005 * 109.12694 * 91.90068 * 5 4 2 39 39 H 1.08996 * 109.47145 * 289.05960 * 6 5 4 40 40 H 1.09001 * 109.47671 * 306.45587 * 7 6 5 41 41 H 1.08998 * 109.47454 * 186.45584 * 7 6 5 42 42 H 0.97005 * 119.99811 * 0.02562 * 8 7 6 43 43 H 1.09004 * 109.46762 * 300.00389 * 11 9 8 44 44 H 1.08998 * 109.46924 * 59.99727 * 11 9 8 45 45 H 1.08000 * 120.03375 * 0.02562 * 14 13 12 46 46 H 1.08000 * 119.97117 * 180.27722 * 15 14 13 47 47 H 1.08995 * 109.47113 * 125.02591 * 17 16 15 48 48 H 0.96700 * 113.99445 * 60.00819 * 18 17 16 49 49 H 1.07997 * 119.97672 * 179.97438 * 23 16 15 50 50 H 1.08999 * 111.42569 * 76.90583 * 28 6 5 51 51 H 1.08993 * 111.42505 * 201.85203 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5557 -1.0124 1.4423 5 6 3.3933 -2.0805 0.6910 6 6 2.8147 -2.3637 -0.7031 7 6 3.8086 -3.2049 -1.5065 8 7 3.9329 -4.5304 -0.8950 9 6 4.7550 -5.4492 -1.4394 10 8 5.3922 -5.1786 -2.4352 11 6 4.8824 -6.8129 -0.8107 12 8 5.8063 -7.6004 -1.5645 13 6 6.0374 -8.8666 -1.1280 14 6 5.3927 -9.3391 0.0056 15 6 5.6253 -10.6285 0.4443 16 6 6.5081 -11.4437 -0.2393 17 6 6.7647 -12.8475 0.2450 18 8 8.1256 -12.9652 0.6649 19 14 5.6373 -13.2255 1.6791 20 1 4.2232 -13.1031 1.2427 21 1 5.8906 -14.6086 2.1568 22 1 5.8999 -12.2659 2.7815 23 6 7.1564 -10.9731 -1.3664 24 6 6.9229 -9.6868 -1.8123 25 7 7.6167 -9.1838 -3.0190 26 8 8.3943 -9.9041 -3.6191 27 8 7.4101 -8.0496 -3.4120 28 6 2.5568 -1.0160 -1.4434 29 1 -0.3633 0.4333 0.9319 30 1 -0.3633 0.5904 -0.8412 31 1 -0.3634 -1.0236 -0.0907 32 1 3.6237 1.7042 -0.0907 33 1 2.1193 2.2890 -0.8412 34 1 2.2658 2.2321 0.9318 35 1 1.7532 -1.4764 2.0158 36 1 3.1882 -0.3988 2.0838 37 1 3.3971 -3.0037 1.2705 38 1 4.4176 -1.7225 0.5866 39 1 1.8757 -2.9080 -0.6030 40 1 4.7816 -2.7135 -1.5094 41 1 3.4514 -3.3094 -2.5310 42 1 3.4201 -4.7482 -0.1009 43 1 5.2442 -6.7090 0.2123 44 1 3.9085 -7.3022 -0.8037 45 1 4.7060 -8.7013 0.5423 46 1 5.1202 -10.9984 1.3243 47 1 6.5720 -13.5519 -0.5641 48 1 8.3683 -12.3664 1.3844 49 1 7.8459 -11.6117 -1.8985 50 1 3.4839 -0.5866 -1.8231 51 1 1.8203 -1.1330 -2.2382 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310366_4549638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:39:23 Heat of formation + Delta-G solvation = -122.422459 kcal Electronic energy + Delta-G solvation = -32498.046508 eV Core-core repulsion = 27910.640092 eV Total energy + Delta-G solvation = -4587.406416 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 382.161 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.01148 -41.74616 -40.76776 -39.55013 -37.95775 -37.50422 -37.10671 -34.79430 -33.51182 -32.40893 -31.08514 -29.88002 -29.31352 -28.59881 -27.60022 -27.03553 -26.41138 -24.31797 -23.91176 -22.80969 -21.74077 -20.97243 -20.45980 -19.46097 -19.24412 -18.55532 -18.33520 -18.31510 -17.68471 -17.27313 -17.04689 -16.54976 -16.47681 -16.20913 -15.86874 -15.71236 -15.55961 -15.28331 -14.82995 -14.65165 -14.18481 -14.14471 -14.05280 -14.01789 -14.00507 -13.72519 -13.65300 -13.41974 -13.30779 -13.30126 -12.75798 -12.57273 -12.54688 -12.40430 -12.37656 -12.18648 -12.05155 -11.97628 -11.83707 -11.72036 -11.61459 -11.04187 -10.98658 -10.93035 -10.74965 -10.59058 -10.51195 -10.17975 -9.91390 -1.13092 -0.38062 0.38570 0.53160 0.87781 1.09905 1.15976 1.24252 1.44947 1.49295 1.67773 1.74486 1.77908 1.93026 2.24789 2.43117 2.97854 3.02316 3.19746 3.27126 3.40130 3.52215 3.57235 3.62111 3.66898 3.70372 3.83885 3.91706 4.13971 4.17524 4.34673 4.35024 4.37748 4.42316 4.44553 4.59533 4.61117 4.63688 4.65154 4.66290 4.66555 4.81514 4.90411 4.93070 5.00199 5.11793 5.20050 5.30135 5.33005 5.39492 5.43131 5.45133 5.71379 6.27665 6.29432 6.95031 7.06090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.969 3.031 3 C -0.444 4.444 4 C -0.399 4.399 5 C -0.112 4.112 6 C -0.097 4.097 7 C 0.129 3.871 8 N -0.728 5.728 9 C 0.511 3.489 10 O -0.496 6.496 11 C 0.030 3.970 12 O -0.253 6.253 13 C 0.200 3.800 14 C -0.209 4.209 15 C -0.033 4.033 16 C -0.158 4.158 17 C -0.078 4.078 18 O -0.534 6.534 19 Si 0.948 3.052 20 H -0.247 1.247 21 H -0.245 1.245 22 H -0.249 1.249 23 C 0.013 3.987 24 C -0.075 4.075 25 N 0.028 4.972 26 O -0.176 6.176 27 O -0.118 6.118 28 C -0.391 4.391 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.401 0.599 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.156 0.844 46 H 0.143 0.857 47 H 0.125 0.875 48 H 0.378 0.622 49 H 0.166 0.834 50 H 0.084 0.916 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 0.681 9.142 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.167 2.833 3 C -0.552 4.552 4 C -0.486 4.486 5 C -0.149 4.149 6 C -0.116 4.116 7 C 0.006 3.994 8 N -0.383 5.383 9 C 0.295 3.705 10 O -0.369 6.369 11 C -0.048 4.048 12 O -0.162 6.162 13 C 0.150 3.850 14 C -0.228 4.228 15 C -0.051 4.051 16 C -0.160 4.160 17 C -0.189 4.189 18 O -0.339 6.339 19 Si 0.769 3.231 20 H -0.170 1.170 21 H -0.169 1.169 22 H -0.173 1.173 23 C -0.006 4.006 24 C -0.160 4.160 25 N 0.548 4.452 26 O -0.385 6.385 27 O -0.342 6.342 28 C -0.478 4.478 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.235 0.765 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.173 0.827 46 H 0.160 0.840 47 H 0.143 0.857 48 H 0.225 0.775 49 H 0.184 0.816 50 H 0.103 0.897 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.578 0.103 9.009 11.773 hybrid contribution 0.031 0.442 0.346 0.562 sum -7.547 0.545 9.355 12.032 Atomic orbital electron populations 1.26029 1.20001 1.04522 1.04562 0.80486 0.67477 0.67503 0.67827 1.26029 1.06685 1.17980 1.04502 1.26499 1.05157 1.06684 1.10213 1.21780 0.99940 0.99134 0.94083 1.21887 0.98514 0.96555 0.94664 1.21552 1.00027 0.80754 0.97068 1.45889 1.46097 1.14193 1.32116 1.19798 0.80535 0.85228 0.84984 1.90870 1.43118 1.79043 1.23840 1.22748 0.94505 0.91274 0.96303 1.86510 1.59070 1.20132 1.50488 1.18698 0.90832 0.84317 0.91123 1.21248 1.05404 0.98350 0.97806 1.21307 0.93599 0.92538 0.97676 1.20281 1.00204 0.98510 0.96962 1.25019 0.91412 0.94025 1.08404 1.86581 1.25474 1.64439 1.57372 0.85709 0.78267 0.82163 0.76922 1.17031 1.16870 1.17258 1.20848 0.94989 0.91286 0.93513 1.20600 1.05244 0.96524 0.93610 1.43336 0.99709 1.00955 1.01160 1.94556 1.31398 1.55967 1.56544 1.94703 1.67250 1.02898 1.69327 1.26768 1.06910 1.03748 1.10345 0.91115 0.91110 0.91148 0.91012 0.91110 0.91183 0.90569 0.90294 0.92155 0.91564 0.90218 0.90925 0.90906 0.76507 0.88119 0.88102 0.82689 0.83968 0.85684 0.77454 0.81624 0.89739 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.27 8.65 101.05 0.87 2.15 16 2 Si 0.97 -3.95 13.36 -169.99 -2.27 -6.22 16 3 C -0.44 1.09 8.65 101.05 0.87 1.96 16 4 C -0.40 1.33 5.85 38.29 0.22 1.55 16 5 C -0.11 0.36 5.16 -25.30 -0.13 0.23 16 6 C -0.10 0.31 2.19 -88.77 -0.19 0.11 16 7 C 0.13 -0.14 5.05 -4.04 -0.02 -0.16 16 8 N -0.73 1.55 5.37 -60.29 -0.32 1.23 16 9 C 0.51 0.53 7.91 -10.98 -0.09 0.45 16 10 O -0.50 -3.36 16.50 -14.35 -0.24 -3.59 16 11 C 0.03 -0.06 5.22 36.01 0.19 0.13 16 12 O -0.25 -0.64 7.68 -49.80 -0.38 -1.02 16 13 C 0.20 0.20 6.67 -39.22 -0.26 -0.06 16 14 C -0.21 0.59 9.04 -39.43 -0.36 0.23 16 15 C -0.03 0.11 8.66 -39.60 -0.34 -0.24 16 16 C -0.16 0.30 5.35 -104.60 -0.56 -0.26 16 17 C -0.08 0.22 2.80 36.01 0.10 0.32 16 18 O -0.53 0.89 12.83 -35.23 -0.45 0.43 16 19 Si 0.95 -3.25 25.13 -169.99 -4.27 -7.52 16 20 H -0.25 0.77 7.11 56.52 0.40 1.17 16 21 H -0.25 0.36 7.11 56.52 0.40 0.76 16 22 H -0.25 0.94 7.04 56.52 0.40 1.34 16 23 C 0.01 0.01 9.19 -39.61 -0.36 -0.36 16 24 C -0.08 -0.22 6.87 -79.81 -0.55 -0.77 16 25 N 0.03 0.19 4.45 34.03 0.15 0.34 16 26 O -0.18 -1.28 18.45 -29.46 -0.54 -1.82 16 27 O -0.12 -1.04 17.24 -36.49 -0.63 -1.67 16 28 C -0.39 1.19 5.29 38.71 0.20 1.40 16 29 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 30 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H 0.07 -0.20 7.96 -51.93 -0.41 -0.62 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 33 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 34 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 35 H 0.08 -0.26 8.04 -51.93 -0.42 -0.68 16 36 H 0.08 -0.23 8.04 -51.93 -0.42 -0.65 16 37 H 0.06 -0.24 7.55 -51.92 -0.39 -0.63 16 38 H 0.07 -0.16 8.04 -51.93 -0.42 -0.58 16 39 H 0.08 -0.32 8.13 -51.93 -0.42 -0.74 16 40 H 0.07 0.01 8.07 -51.93 -0.42 -0.41 16 41 H 0.07 0.02 8.14 -51.93 -0.42 -0.41 16 42 H 0.40 -2.20 7.84 -40.82 -0.32 -2.52 16 43 H 0.10 -0.54 7.65 -51.93 -0.40 -0.94 16 44 H 0.10 -0.54 7.67 -51.93 -0.40 -0.94 16 45 H 0.16 -0.98 6.30 -52.49 -0.33 -1.31 16 46 H 0.14 -0.77 4.86 -52.49 -0.25 -1.02 16 47 H 0.13 -0.45 7.96 -51.93 -0.41 -0.86 16 48 H 0.38 -1.89 8.70 45.56 0.40 -1.49 16 49 H 0.17 0.03 7.61 -52.49 -0.40 -0.37 16 50 H 0.08 -0.22 8.03 -51.93 -0.42 -0.63 16 51 H 0.08 -0.25 8.06 -51.93 -0.42 -0.67 16 LS Contribution 423.29 15.07 6.38 6.38 Total: 0.00 -11.75 423.29 -10.12 -21.87 By element: Atomic # 1 Polarization: -7.94 SS G_CDS: -7.14 Total: -15.09 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -0.40 Total: 6.68 kcal Atomic # 7 Polarization: 1.74 SS G_CDS: -0.17 Total: 1.57 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -2.24 Total: -7.67 kcal Atomic # 14 Polarization: -7.20 SS G_CDS: -6.54 Total: -13.74 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -11.75 -10.12 -21.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_4549638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.549 kcal (2) G-P(sol) polarization free energy of solvation -11.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds