Wall clock time and date at job start Tue Mar 9 2021 13:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86298 * 111.24174 * 2 1 4 4 C 1.89338 * 111.45914 * 125.06523 * 2 1 3 5 5 C 1.55142 * 101.34667 * 120.85141 * 4 2 1 6 6 C 1.53573 * 111.29462 * 331.41516 * 5 4 2 7 7 C 1.52998 * 109.47298 * 169.06014 * 6 5 4 8 8 N 1.46506 * 109.47237 * 66.45247 * 7 6 5 9 9 C 1.34773 * 119.99969 * 179.72043 * 8 7 6 10 10 O 1.21281 * 120.00220 * 0.02562 * 9 8 7 11 11 C 1.50706 * 120.00080 * 180.02562 * 9 8 7 12 12 O 1.42898 * 109.47060 * 180.02562 * 11 9 8 13 13 C 1.35908 * 116.99594 * 179.97438 * 12 11 9 14 14 C 1.38712 * 120.05380 * 359.72730 * 13 12 11 15 15 C 1.38169 * 119.93893 * 179.74467 * 14 13 12 16 16 C 1.38242 * 120.05535 * 0.52560 * 15 14 13 17 17 C 1.50704 * 119.94322 * 179.72197 * 16 15 14 18 18 O 1.42902 * 109.47105 * 245.02328 * 17 16 15 19 19 Si 1.86295 * 109.46960 * 5.02790 * 17 16 15 20 20 H 1.48496 * 109.47451 * 59.99698 * 19 17 16 21 21 H 1.48500 * 109.47012 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47131 * 299.99430 * 19 17 16 23 23 C 1.38286 * 120.11463 * 359.74987 * 16 15 14 24 24 C 1.38123 * 120.05228 * 359.97438 * 23 16 15 25 25 N 1.48005 * 120.02938 * 180.02562 * 24 23 16 26 26 O 1.21806 * 119.99564 * 359.97438 * 25 24 23 27 27 O 1.21795 * 120.00187 * 179.97438 * 25 24 23 28 28 C 1.55911 * 109.50587 * 49.03701 * 6 5 4 29 29 H 1.09004 * 109.46992 * 294.93512 * 1 2 3 30 30 H 1.09002 * 109.46729 * 54.93504 * 1 2 3 31 31 H 1.08994 * 109.47456 * 174.93384 * 1 2 3 32 32 H 1.09005 * 109.47313 * 185.06353 * 3 2 1 33 33 H 1.09001 * 109.47335 * 305.06319 * 3 2 1 34 34 H 1.08997 * 109.47335 * 65.06423 * 3 2 1 35 35 H 1.08998 * 111.04506 * 2.83576 * 4 2 1 36 36 H 1.08998 * 111.08093 * 238.88692 * 4 2 1 37 37 H 1.09007 * 109.12357 * 210.92552 * 5 4 2 38 38 H 1.09005 * 109.12694 * 91.90068 * 5 4 2 39 39 H 1.08996 * 109.47145 * 289.05960 * 6 5 4 40 40 H 1.09001 * 109.47671 * 306.45587 * 7 6 5 41 41 H 1.08998 * 109.47454 * 186.45584 * 7 6 5 42 42 H 0.97005 * 119.99811 * 0.02562 * 8 7 6 43 43 H 1.09004 * 109.46762 * 300.00389 * 11 9 8 44 44 H 1.08998 * 109.46924 * 59.99727 * 11 9 8 45 45 H 1.08000 * 120.03375 * 0.02562 * 14 13 12 46 46 H 1.08000 * 119.97117 * 180.27722 * 15 14 13 47 47 H 1.08995 * 109.47113 * 125.02591 * 17 16 15 48 48 H 0.96700 * 113.99445 * 60.00819 * 18 17 16 49 49 H 1.07997 * 119.97672 * 179.97438 * 23 16 15 50 50 H 1.08999 * 111.42569 * 76.90583 * 28 6 5 51 51 H 1.08993 * 111.42505 * 201.85203 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5557 -1.0124 1.4423 5 6 3.3933 -2.0805 0.6910 6 6 2.8147 -2.3637 -0.7031 7 6 3.8086 -3.2049 -1.5065 8 7 3.9329 -4.5304 -0.8950 9 6 4.7550 -5.4492 -1.4394 10 8 5.3922 -5.1786 -2.4352 11 6 4.8824 -6.8129 -0.8107 12 8 5.8063 -7.6004 -1.5645 13 6 6.0374 -8.8666 -1.1280 14 6 5.3927 -9.3391 0.0056 15 6 5.6253 -10.6285 0.4443 16 6 6.5081 -11.4437 -0.2393 17 6 6.7647 -12.8475 0.2450 18 8 8.1256 -12.9652 0.6649 19 14 5.6373 -13.2255 1.6791 20 1 4.2232 -13.1031 1.2427 21 1 5.8906 -14.6086 2.1568 22 1 5.8999 -12.2659 2.7815 23 6 7.1564 -10.9731 -1.3664 24 6 6.9229 -9.6868 -1.8123 25 7 7.6167 -9.1838 -3.0190 26 8 8.3943 -9.9041 -3.6191 27 8 7.4101 -8.0496 -3.4120 28 6 2.5568 -1.0160 -1.4434 29 1 -0.3633 0.4333 0.9319 30 1 -0.3633 0.5904 -0.8412 31 1 -0.3634 -1.0236 -0.0907 32 1 3.6237 1.7042 -0.0907 33 1 2.1193 2.2890 -0.8412 34 1 2.2658 2.2321 0.9318 35 1 1.7532 -1.4764 2.0158 36 1 3.1882 -0.3988 2.0838 37 1 3.3971 -3.0037 1.2705 38 1 4.4176 -1.7225 0.5866 39 1 1.8757 -2.9080 -0.6030 40 1 4.7816 -2.7135 -1.5094 41 1 3.4514 -3.3094 -2.5310 42 1 3.4201 -4.7482 -0.1009 43 1 5.2442 -6.7090 0.2123 44 1 3.9085 -7.3022 -0.8037 45 1 4.7060 -8.7013 0.5423 46 1 5.1202 -10.9984 1.3243 47 1 6.5720 -13.5519 -0.5641 48 1 8.3683 -12.3664 1.3844 49 1 7.8459 -11.6117 -1.8985 50 1 3.4839 -0.5866 -1.8231 51 1 1.8203 -1.1330 -2.2382 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_4549638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:39:22 Heat of formation + Delta-G solvation = -121.351585 kcal Electronic energy + Delta-G solvation = -32498.000071 eV Core-core repulsion = 27910.640092 eV Total energy + Delta-G solvation = -4587.359980 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 382.161 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.30150 -41.79441 -40.78094 -39.47887 -37.85602 -37.59441 -37.33523 -34.75950 -33.49869 -32.28286 -30.92685 -29.68570 -29.08375 -28.36548 -27.83300 -26.90660 -26.23183 -24.18147 -23.83086 -22.82693 -21.73306 -20.76172 -20.52203 -19.79031 -19.22761 -18.64656 -18.53434 -18.17530 -17.64145 -17.25207 -16.94303 -16.36239 -16.31859 -16.04476 -15.73000 -15.63495 -15.35563 -15.12487 -14.66265 -14.52416 -14.04562 -13.99621 -13.87104 -13.82396 -13.79631 -13.60841 -13.43330 -13.24479 -13.22702 -13.12633 -12.70808 -12.52290 -12.39417 -12.31064 -12.27342 -12.20711 -12.17268 -12.08342 -11.85106 -11.72534 -11.36496 -11.12626 -10.85498 -10.74843 -10.52066 -10.37163 -10.30156 -10.13160 -9.81570 -1.32840 -0.25929 0.13871 0.34047 1.14315 1.21391 1.44162 1.47915 1.55248 1.78641 1.98701 2.01734 2.01801 2.07202 2.34975 2.67193 3.10794 3.21677 3.38676 3.53468 3.60167 3.68002 3.77316 3.83745 3.89301 3.97096 4.05259 4.11831 4.28200 4.38302 4.54153 4.56150 4.61552 4.63911 4.66326 4.79220 4.80152 4.81487 4.82801 4.85125 4.87760 4.91045 5.06183 5.14828 5.18306 5.25928 5.29517 5.39273 5.53930 5.57916 5.62608 5.66312 5.73237 6.41621 6.43787 6.68392 7.13960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.040 2.960 3 C -0.465 4.465 4 C -0.405 4.405 5 C -0.113 4.113 6 C -0.090 4.090 7 C 0.128 3.872 8 N -0.707 5.707 9 C 0.504 3.496 10 O -0.569 6.569 11 C 0.025 3.975 12 O -0.292 6.292 13 C 0.192 3.808 14 C -0.190 4.190 15 C -0.018 4.018 16 C -0.150 4.150 17 C -0.087 4.087 18 O -0.554 6.554 19 Si 0.986 3.014 20 H -0.241 1.241 21 H -0.280 1.280 22 H -0.230 1.230 23 C 0.002 3.998 24 C -0.103 4.103 25 N 0.034 4.966 26 O -0.195 6.195 27 O -0.178 6.178 28 C -0.410 4.410 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.421 0.579 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.203 0.797 46 H 0.177 0.823 47 H 0.126 0.874 48 H 0.392 0.608 49 H 0.157 0.843 50 H 0.074 0.926 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.981 -0.285 13.061 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.233 2.767 3 C -0.571 4.571 4 C -0.490 4.490 5 C -0.151 4.151 6 C -0.108 4.108 7 C 0.004 3.996 8 N -0.363 5.363 9 C 0.290 3.710 10 O -0.447 6.447 11 C -0.052 4.052 12 O -0.202 6.202 13 C 0.142 3.858 14 C -0.208 4.208 15 C -0.035 4.035 16 C -0.151 4.151 17 C -0.196 4.196 18 O -0.362 6.362 19 Si 0.807 3.193 20 H -0.165 1.165 21 H -0.205 1.205 22 H -0.153 1.153 23 C -0.017 4.017 24 C -0.189 4.189 25 N 0.544 4.456 26 O -0.405 6.405 27 O -0.391 6.391 28 C -0.494 4.494 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.260 0.740 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.220 0.780 46 H 0.194 0.806 47 H 0.143 0.857 48 H 0.241 0.759 49 H 0.175 0.825 50 H 0.092 0.908 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.306 -0.758 12.934 16.556 hybrid contribution 0.842 0.666 -0.778 1.326 sum -9.464 -0.092 12.157 15.406 Atomic orbital electron populations 1.26177 1.20960 1.04725 1.04393 0.79402 0.65834 0.65200 0.66215 1.26298 1.06548 1.19947 1.04295 1.26555 1.05339 1.06745 1.10409 1.21790 0.99345 0.99972 0.93986 1.21872 0.98496 0.96107 0.94357 1.21492 0.99636 0.81551 0.96887 1.45746 1.45116 1.13218 1.32178 1.20547 0.79592 0.86755 0.84127 1.90847 1.46134 1.80537 1.27167 1.23119 0.96077 0.88952 0.97037 1.86479 1.60356 1.21050 1.52272 1.18962 0.90895 0.83856 0.92054 1.21755 1.04431 0.98831 0.95794 1.21737 0.92066 0.91939 0.97784 1.20469 0.99729 0.99108 0.95801 1.25291 0.91389 0.93408 1.09467 1.86555 1.26282 1.65120 1.58225 0.85199 0.77599 0.80478 0.76039 1.16463 1.20514 1.15312 1.20894 0.95758 0.90385 0.94652 1.20891 1.07070 0.98144 0.92748 1.43893 0.99256 1.00378 1.02048 1.94498 1.32319 1.55743 1.57899 1.94689 1.68921 1.04207 1.71264 1.26978 1.06663 1.04522 1.11283 0.91097 0.91559 0.90702 0.91566 0.91544 0.91218 0.89650 0.90552 0.90651 0.92695 0.88377 0.92879 0.92783 0.74037 0.83919 0.83890 0.78010 0.80560 0.85654 0.75893 0.82541 0.90752 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 3.04 8.65 113.37 0.98 4.02 16 2 Si 1.04 -8.97 13.36 68.60 0.92 -8.06 16 3 C -0.46 2.04 8.65 113.37 0.98 3.02 16 4 C -0.40 3.29 5.85 72.72 0.43 3.71 16 5 C -0.11 0.86 5.16 31.52 0.16 1.02 16 6 C -0.09 0.61 2.19 -9.59 -0.02 0.59 16 7 C 0.13 -0.15 5.05 86.38 0.44 0.29 16 8 N -0.71 3.43 5.37 -463.05 -2.49 0.95 16 9 C 0.50 1.26 7.91 87.66 0.69 1.95 16 10 O -0.57 -9.50 16.50 16.00 0.26 -9.23 16 11 C 0.03 -0.16 5.22 71.24 0.37 0.22 16 12 O -0.29 -1.60 7.68 -63.49 -0.49 -2.09 16 13 C 0.19 0.26 6.67 22.51 0.15 0.41 16 14 C -0.19 1.81 9.04 22.37 0.20 2.02 16 15 C -0.02 0.18 8.66 22.25 0.19 0.38 16 16 C -0.15 0.82 5.35 -19.85 -0.11 0.71 16 17 C -0.09 0.61 2.80 71.24 0.20 0.81 16 18 O -0.55 2.15 12.83 -148.98 -1.91 0.24 16 19 Si 0.99 -9.49 25.13 68.60 1.72 -7.77 16 20 H -0.24 2.47 7.11 99.48 0.71 3.17 16 21 H -0.28 1.02 7.11 99.48 0.71 1.73 16 22 H -0.23 2.84 7.04 99.48 0.70 3.54 16 23 C 0.00 0.00 9.19 22.25 0.20 0.21 16 24 C -0.10 -0.75 6.87 36.47 0.25 -0.50 16 25 N 0.03 0.58 4.45 -46.24 -0.21 0.37 16 26 O -0.20 -3.61 18.45 18.88 0.35 -3.26 16 27 O -0.18 -3.99 17.24 25.61 0.44 -3.55 16 28 C -0.41 2.31 5.29 72.99 0.39 2.69 16 29 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 30 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 31 H 0.07 -0.54 7.96 -2.39 -0.02 -0.56 16 32 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 33 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 34 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 35 H 0.08 -0.80 8.04 -2.39 -0.02 -0.82 16 36 H 0.08 -0.53 8.04 -2.39 -0.02 -0.55 16 37 H 0.07 -0.79 7.55 -2.38 -0.02 -0.81 16 38 H 0.05 -0.27 8.04 -2.38 -0.02 -0.29 16 39 H 0.10 -0.99 8.13 -2.39 -0.02 -1.01 16 40 H 0.05 0.15 8.07 -2.39 -0.02 0.13 16 41 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.42 -5.72 7.84 -92.70 -0.73 -6.45 16 43 H 0.14 -2.14 7.65 -2.39 -0.02 -2.15 16 44 H 0.14 -2.14 7.67 -2.39 -0.02 -2.16 16 45 H 0.20 -3.91 6.30 -2.91 -0.02 -3.93 16 46 H 0.18 -2.96 4.86 -2.91 -0.01 -2.97 16 47 H 0.13 -0.94 7.96 -2.39 -0.02 -0.96 16 48 H 0.39 -4.35 8.70 -74.06 -0.64 -4.99 16 49 H 0.16 0.42 7.61 -2.91 -0.02 0.39 16 50 H 0.07 -0.26 8.03 -2.39 -0.02 -0.28 16 51 H 0.08 -0.46 8.06 -2.39 -0.02 -0.48 16 Total: 0.00 -36.28 423.29 4.46 -31.82 By element: Atomic # 1 Polarization: -21.32 SS G_CDS: 0.35 Total: -20.98 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 5.51 Total: 21.54 kcal Atomic # 7 Polarization: 4.01 SS G_CDS: -2.69 Total: 1.32 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -1.35 Total: -17.88 kcal Atomic # 14 Polarization: -18.46 SS G_CDS: 2.64 Total: -15.82 kcal Total: -36.28 4.46 -31.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_4549638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.529 kcal (2) G-P(sol) polarization free energy of solvation -36.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds