Wall clock time and date at job start Tue Mar 9 2021 13:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53006 * 109.12221 * 169.52061 * 6 5 4 8 8 N 1.46498 * 109.47111 * 66.45429 * 7 6 5 9 9 C 1.34770 * 119.99690 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00430 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99929 * 180.02562 * 9 8 7 12 12 O 1.42892 * 109.47300 * 180.02562 * 11 9 8 13 13 C 1.35901 * 117.00292 * 179.97438 * 12 11 9 14 14 C 1.38717 * 120.05203 * 359.72180 * 13 12 11 15 15 C 1.38165 * 119.93700 * 179.72300 * 14 13 12 16 16 C 1.38243 * 120.06140 * 0.57500 * 15 14 13 17 17 C 1.38286 * 120.10816 * 359.67932 * 16 15 14 18 18 C 1.50704 * 119.96852 * 180.02562 * 17 16 15 19 19 O 1.42895 * 109.46990 * 245.02166 * 18 17 16 20 20 Si 1.86295 * 109.47292 * 5.02610 * 18 17 16 21 21 H 1.48492 * 109.47511 * 59.99586 * 20 18 17 22 22 H 1.48500 * 109.47229 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46881 * 299.99652 * 20 18 17 24 24 C 1.38121 * 120.05837 * 0.04557 * 17 16 15 25 25 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 26 26 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 27 27 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 28 28 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 30 30 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 32 32 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 33 33 H 1.09003 * 111.42412 * 20.82559 * 4 2 1 34 34 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 35 35 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 36 36 H 1.09004 * 109.12533 * 288.65800 * 6 5 4 37 37 H 1.09007 * 109.46549 * 186.45308 * 7 6 5 38 38 H 1.08996 * 109.46988 * 306.45158 * 7 6 5 39 39 H 0.96998 * 120.00135 * 359.97438 * 8 7 6 40 40 H 1.09004 * 109.46485 * 299.99673 * 11 9 8 41 41 H 1.08995 * 109.47046 * 59.99428 * 11 9 8 42 42 H 1.07996 * 120.02566 * 0.02562 * 14 13 12 43 43 H 1.08002 * 119.96764 * 180.27723 * 15 14 13 44 44 H 1.07996 * 119.94268 * 179.70396 * 16 15 14 45 45 H 1.09003 * 109.46746 * 125.02467 * 18 17 16 46 46 H 0.96697 * 114.00071 * 60.00424 * 19 18 17 47 47 H 1.08001 * 120.02841 * 180.02562 * 24 17 16 48 48 H 1.08995 * 111.07416 * 213.38000 * 25 6 5 49 49 H 1.08996 * 111.09205 * 89.35608 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4523 -2.6583 -1.5002 8 7 4.9920 -3.8815 -0.9014 9 6 6.0644 -4.4847 -1.4515 10 8 6.5829 -4.0145 -2.4419 11 6 6.6192 -5.7434 -0.8358 12 8 7.7464 -6.1874 -1.5935 13 6 8.3685 -7.3185 -1.1687 14 6 7.9072 -7.9839 -0.0424 15 6 8.5379 -9.1368 0.3841 16 6 9.6352 -9.6208 -0.3036 17 6 10.1002 -8.9563 -1.4236 18 6 11.2963 -9.4870 -2.1713 19 8 12.3729 -8.5526 -2.0722 20 14 11.8177 -11.1159 -1.4329 21 1 10.6989 -12.0868 -1.5358 22 1 12.9966 -11.6385 -2.1692 23 1 12.1737 -10.9205 -0.0044 24 6 9.4698 -7.8065 -1.8574 25 6 2.5556 -1.0124 -1.4423 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 2.1907 2.2612 0.8899 30 1 3.6274 1.7027 -0.0005 31 1 2.1908 2.2612 -0.8900 32 1 2.9328 -0.3695 2.2392 33 1 1.8198 -1.7216 1.8247 34 1 4.5681 -1.0679 0.6057 35 1 4.0203 -2.6213 1.2792 36 1 2.5392 -3.0050 -0.5833 37 1 4.1426 -2.8616 -2.5254 38 1 5.2196 -1.8841 -1.4992 39 1 4.5779 -4.2569 -0.1086 40 1 6.9283 -5.5405 0.1896 41 1 5.8519 -6.5175 -0.8376 42 1 7.0527 -7.6038 0.4978 43 1 8.1764 -9.6578 1.2584 44 1 10.1297 -10.5195 0.0342 45 1 11.0350 -9.6304 -3.2198 46 1 12.6585 -8.3764 -1.1654 47 1 9.8331 -7.2882 -2.7325 48 1 1.7543 -1.3787 -2.0838 49 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_4860298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:03 Heat of formation + Delta-G solvation = -125.841655 kcal Electronic energy + Delta-G solvation = -25978.658391 eV Core-core repulsion = 22222.120143 eV Total energy + Delta-G solvation = -3756.538248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.57964 -40.66112 -39.05905 -37.85889 -37.21479 -34.75808 -32.49171 -31.79854 -30.64908 -29.35482 -29.07374 -28.37347 -26.95479 -26.30781 -23.96818 -23.71791 -22.58626 -21.59035 -20.72053 -19.33535 -18.53131 -17.90994 -17.51828 -17.31215 -17.08670 -16.67214 -16.24671 -16.12845 -15.64493 -15.55701 -15.08928 -14.96286 -14.64869 -14.51710 -14.38068 -14.02621 -13.84974 -13.81813 -13.73141 -13.47420 -13.38371 -13.27477 -13.14272 -12.99971 -12.60726 -12.51624 -12.21228 -12.19362 -12.07534 -11.96271 -11.84910 -11.54755 -11.40901 -11.12045 -10.75872 -10.47034 -10.38259 -10.30410 -10.14330 -9.94539 -9.30939 0.18835 0.36085 1.14941 1.40930 1.47450 1.48146 1.54831 1.79349 1.92455 2.02175 2.05390 2.59176 2.64880 2.67509 3.49876 3.54789 3.68686 3.79850 3.84656 3.97636 4.02016 4.05957 4.07705 4.11926 4.20521 4.36239 4.53152 4.54533 4.60821 4.66158 4.66646 4.78833 4.80628 4.82047 4.82885 4.86693 4.88588 4.96808 5.14447 5.21752 5.22455 5.27038 5.33495 5.37434 5.41878 5.52548 5.57116 5.62409 5.64847 5.66850 6.25434 6.44454 6.68281 7.09283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.037 2.963 3 C -0.463 4.463 4 C -0.403 4.403 5 C -0.118 4.118 6 C -0.086 4.086 7 C 0.125 3.875 8 N -0.708 5.708 9 C 0.509 3.491 10 O -0.577 6.577 11 C 0.038 3.962 12 O -0.322 6.322 13 C 0.114 3.886 14 C -0.203 4.203 15 C -0.071 4.071 16 C -0.171 4.171 17 C -0.084 4.084 18 C -0.091 4.091 19 O -0.555 6.555 20 Si 0.997 3.003 21 H -0.253 1.253 22 H -0.278 1.278 23 H -0.245 1.245 24 C -0.145 4.145 25 C -0.409 4.409 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.420 0.580 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.137 0.863 45 H 0.118 0.882 46 H 0.389 0.611 47 H 0.117 0.883 48 H 0.084 0.916 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.793 -1.842 7.955 10.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.231 2.769 3 C -0.569 4.569 4 C -0.489 4.489 5 C -0.156 4.156 6 C -0.105 4.105 7 C 0.002 3.998 8 N -0.363 5.363 9 C 0.295 3.705 10 O -0.456 6.456 11 C -0.039 4.039 12 O -0.236 6.236 13 C 0.069 3.931 14 C -0.221 4.221 15 C -0.089 4.089 16 C -0.188 4.188 17 C -0.084 4.084 18 C -0.200 4.200 19 O -0.362 6.362 20 Si 0.820 3.180 21 H -0.177 1.177 22 H -0.203 1.203 23 H -0.168 1.168 24 C -0.164 4.164 25 C -0.494 4.494 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.258 0.742 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.178 0.822 43 H 0.177 0.823 44 H 0.155 0.845 45 H 0.136 0.864 46 H 0.238 0.762 47 H 0.136 0.864 48 H 0.103 0.897 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.223 -2.106 6.784 8.817 hybrid contribution -0.128 0.532 0.266 0.609 sum -5.351 -1.574 7.051 8.990 Atomic orbital electron populations 1.26192 1.21200 1.04657 1.04321 0.79437 0.65583 0.65534 0.66377 1.26274 1.06551 1.19745 1.04346 1.26721 1.03657 1.08402 1.10133 1.22010 0.98452 1.01079 0.94041 1.21716 0.95201 0.99383 0.94187 1.21591 0.95858 0.85327 0.97058 1.45796 1.30455 1.27685 1.32371 1.20605 0.80555 0.85575 0.83790 1.90762 1.60548 1.66598 1.27670 1.22729 0.89295 0.95281 0.96638 1.86127 1.43765 1.40049 1.53632 1.19231 0.93104 0.86375 0.94424 1.21616 1.04205 0.98689 0.97580 1.21288 0.93722 0.94513 0.99383 1.21241 0.99515 1.01594 0.96485 1.20214 0.97318 0.94755 0.96121 1.25260 0.85839 1.03149 1.05790 1.86500 1.50773 1.64879 1.34041 0.85017 0.79495 0.74071 0.79429 1.17705 1.20330 1.16811 1.20321 0.95923 0.98095 1.02032 1.26824 1.05476 1.05702 1.11390 0.91515 0.91211 0.90829 0.91187 0.91539 0.91471 0.90374 0.89658 0.92131 0.90680 0.88936 0.92704 0.92600 0.74182 0.85692 0.85680 0.82174 0.82266 0.84520 0.86414 0.76172 0.86449 0.89731 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.51 8.65 113.37 0.98 3.50 16 2 Si 1.04 -8.07 13.35 68.60 0.92 -7.15 16 3 C -0.46 1.81 8.65 113.37 0.98 2.79 16 4 C -0.40 2.88 5.95 72.99 0.43 3.31 16 5 C -0.12 0.76 5.01 31.80 0.16 0.92 16 6 C -0.09 0.48 2.37 -9.79 -0.02 0.46 16 7 C 0.12 -0.03 4.92 86.38 0.43 0.40 16 8 N -0.71 1.85 5.36 -463.06 -2.48 -0.63 16 9 C 0.51 2.39 7.91 87.66 0.69 3.09 16 10 O -0.58 -9.83 16.50 16.01 0.26 -9.57 16 11 C 0.04 -0.06 5.22 71.24 0.37 0.31 16 12 O -0.32 -2.60 9.67 -73.40 -0.71 -3.31 16 13 C 0.11 0.59 6.69 22.51 0.15 0.74 16 14 C -0.20 0.31 9.04 22.37 0.20 0.52 16 15 C -0.07 0.19 10.04 22.25 0.22 0.41 16 16 C -0.17 0.04 8.67 22.28 0.19 0.23 16 17 C -0.08 -0.25 5.35 -19.88 -0.11 -0.36 16 18 C -0.09 -0.13 2.80 71.24 0.20 0.07 16 19 O -0.55 -1.91 12.83 -148.98 -1.91 -3.82 16 20 Si 1.00 -1.11 25.14 68.60 1.72 0.62 16 21 H -0.25 0.17 7.11 99.48 0.71 0.88 16 22 H -0.28 -0.75 7.11 99.48 0.71 -0.04 16 23 H -0.24 0.58 7.04 99.48 0.70 1.28 16 24 C -0.14 -1.02 9.62 22.37 0.22 -0.80 16 25 C -0.41 2.13 5.28 72.79 0.38 2.51 16 26 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 27 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 28 H 0.07 -0.43 7.96 -2.38 -0.02 -0.45 16 29 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 30 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 31 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 32 H 0.08 -0.50 8.06 -2.39 -0.02 -0.52 16 33 H 0.08 -0.68 8.06 -2.39 -0.02 -0.70 16 34 H 0.06 -0.28 8.05 -2.39 -0.02 -0.30 16 35 H 0.07 -0.64 7.54 -2.39 -0.02 -0.66 16 36 H 0.09 -0.75 8.14 -2.38 -0.02 -0.77 16 37 H 0.05 0.18 8.13 -2.38 -0.02 0.16 16 38 H 0.06 0.17 8.08 -2.39 -0.02 0.15 16 39 H 0.42 -4.37 7.83 -92.71 -0.73 -5.10 16 40 H 0.13 -1.03 7.65 -2.38 -0.02 -1.05 16 41 H 0.13 -1.03 7.67 -2.39 -0.02 -1.05 16 42 H 0.16 -1.38 6.30 -2.91 -0.02 -1.40 16 43 H 0.16 -1.39 8.06 -2.91 -0.02 -1.41 16 44 H 0.14 -0.49 4.86 -2.91 -0.01 -0.51 16 45 H 0.12 0.10 7.96 -2.39 -0.02 0.09 16 46 H 0.39 -1.40 8.70 -74.06 -0.64 -2.04 16 47 H 0.12 1.15 8.06 -2.91 -0.02 1.12 16 48 H 0.08 -0.47 8.04 -2.39 -0.02 -0.49 16 49 H 0.07 -0.25 7.85 -2.39 -0.02 -0.27 16 Total: 0.00 -23.88 397.07 3.61 -20.27 By element: Atomic # 1 Polarization: -14.82 SS G_CDS: 0.32 Total: -14.49 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 5.48 Total: 18.09 kcal Atomic # 7 Polarization: 1.85 SS G_CDS: -2.48 Total: -0.63 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -2.36 Total: -16.70 kcal Atomic # 14 Polarization: -9.18 SS G_CDS: 2.64 Total: -6.54 kcal Total: -23.88 3.61 -20.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_4860298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.569 kcal (2) G-P(sol) polarization free energy of solvation -23.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds