Wall clock time and date at job start Tue Mar 9 2021 13:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35980 * 116.99632 * 2 1 4 4 C 1.38675 * 120.00409 * 0.02562 * 3 2 1 5 5 C 1.38160 * 120.00081 * 179.74470 * 4 3 2 6 6 C 1.38670 * 119.99656 * 0.50996 * 5 4 3 7 7 O 1.35988 * 119.99954 * 179.73986 * 6 5 4 8 8 C 1.42898 * 116.99524 * 359.73146 * 7 6 5 9 9 C 1.50706 * 109.47060 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99699 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00080 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47237 * 179.72043 * 12 11 9 14 14 C 1.53573 * 109.47298 * 66.45247 * 13 12 11 15 15 C 1.55142 * 111.29462 * 169.06014 * 14 13 12 16 16 Si 1.89338 * 101.34667 * 331.41516 * 15 14 13 17 17 C 1.86298 * 111.45914 * 120.85141 * 16 15 14 18 18 C 1.86298 * 111.45758 * 245.79617 * 16 15 14 19 19 C 1.55911 * 109.47189 * 186.49640 * 13 12 11 20 20 C 1.38716 * 120.00280 * 359.47106 * 6 5 4 21 21 C 1.50707 * 120.00077 * 180.29642 * 20 6 5 22 22 O 1.42905 * 109.46889 * 284.99827 * 21 20 6 23 23 Si 1.86300 * 109.47000 * 165.00012 * 21 20 6 24 24 H 1.48509 * 109.47124 * 60.00130 * 23 21 20 25 25 H 1.48501 * 109.47013 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47007 * 300.00126 * 23 21 20 27 27 C 1.38111 * 119.99852 * 0.27501 * 20 6 5 28 28 H 1.08997 * 109.47165 * 60.00116 * 1 2 3 29 29 H 1.08998 * 109.47111 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47228 * 299.99849 * 1 2 3 31 31 H 1.08004 * 119.99757 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.99984 * 180.25238 * 5 4 3 33 33 H 1.09004 * 109.47454 * 60.00061 * 8 7 6 34 34 H 1.08998 * 109.47671 * 299.99841 * 8 7 6 35 35 H 0.97005 * 120.00161 * 359.72088 * 11 9 8 36 36 H 1.09001 * 109.46512 * 299.72412 * 12 11 9 37 37 H 1.08998 * 109.47174 * 59.71534 * 12 11 9 38 38 H 1.08996 * 109.46978 * 306.45199 * 13 12 11 39 39 H 1.09007 * 109.12789 * 289.54725 * 14 13 12 40 40 H 1.09005 * 109.12280 * 48.57219 * 14 13 12 41 41 H 1.08998 * 111.04876 * 89.42814 * 15 14 13 42 42 H 1.08998 * 111.05252 * 213.35911 * 15 14 13 43 43 H 1.09004 * 109.46992 * 60.00035 * 17 16 15 44 44 H 1.09002 * 109.46729 * 180.02562 * 17 16 15 45 45 H 1.08994 * 109.47456 * 299.99907 * 17 16 15 46 46 H 1.09005 * 109.47313 * 59.99743 * 18 16 15 47 47 H 1.09001 * 109.47335 * 179.97438 * 18 16 15 48 48 H 1.08997 * 109.47335 * 299.99813 * 18 16 15 49 49 H 1.08999 * 111.42569 * 316.88203 * 19 13 12 50 50 H 1.08993 * 111.42505 * 81.82823 * 19 13 12 51 51 H 1.08992 * 109.46933 * 45.00068 * 21 20 6 52 52 H 0.96702 * 113.99999 * 60.00237 * 22 21 20 53 53 H 1.08001 * 119.99978 * 179.97438 * 27 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2910 2.3747 0.0005 5 6 1.9182 3.6057 0.0059 6 6 3.3030 3.6782 0.0000 7 8 3.9204 4.8899 -0.0001 8 6 3.0804 6.0459 0.0001 9 6 3.9346 7.2875 0.0005 10 8 5.1436 7.1917 0.0012 11 7 3.3549 8.5042 0.0013 12 6 4.1853 9.7112 0.0012 13 6 3.2860 10.9490 -0.0049 14 6 2.5126 11.0264 1.3196 15 6 1.7998 12.3954 1.4767 16 14 2.9385 13.5257 0.4714 17 6 2.0214 14.3484 -0.9261 18 6 3.7827 14.7824 1.5571 19 6 4.1626 12.2275 -0.1713 20 6 4.0586 2.5149 -0.0001 21 6 5.5636 2.5938 0.0002 22 8 6.0213 2.9673 -1.3010 23 14 6.2724 0.9319 0.4545 24 1 5.8301 -0.0825 -0.5359 25 1 7.7554 1.0094 0.4543 26 1 5.7967 0.5437 1.8067 27 6 3.4316 1.2843 -0.0002 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2125 2.3181 0.0014 32 1 1.3300 4.5114 0.0104 33 1 2.4513 6.0378 0.8902 34 1 2.4510 6.0379 -0.8898 35 1 2.3879 8.5808 -0.0026 36 1 4.8115 9.7213 0.8933 37 1 4.8177 9.7171 -0.8866 38 1 2.5814 10.8820 -0.8337 39 1 1.7677 10.2309 1.3453 40 1 3.2079 10.8886 2.1477 41 1 0.7983 12.3669 1.0474 42 1 1.7666 12.7019 2.5221 43 1 1.2070 14.9498 -0.5219 44 1 2.7057 14.9893 -1.4821 45 1 1.6151 13.5872 -1.5920 46 1 4.3820 14.2690 2.3090 47 1 4.4287 15.4140 0.9472 48 1 3.0316 15.3994 2.0504 49 1 5.0566 12.1810 0.4505 50 1 4.4166 12.4028 -1.2166 51 1 5.8881 3.3382 0.7271 52 1 5.6907 3.8243 -1.6033 53 1 4.0198 0.3785 -0.0007 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_4974302.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:14 Heat of formation + Delta-G solvation = -162.152557 kcal Electronic energy + Delta-G solvation = -30737.014822 eV Core-core repulsion = 26504.682204 eV Total energy + Delta-G solvation = -4232.332618 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.182 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.82964 -40.89111 -39.87805 -38.24912 -37.73260 -36.92687 -34.73121 -32.84168 -31.29934 -30.53749 -29.40626 -29.07383 -28.36497 -28.01566 -26.60821 -26.47770 -24.06381 -23.59836 -22.42448 -21.64700 -20.72529 -19.56055 -18.82747 -18.51007 -18.05856 -17.53196 -17.43005 -17.00206 -16.67186 -16.32743 -16.18513 -15.67451 -15.63761 -15.54637 -15.35803 -14.92612 -14.58493 -14.52270 -14.22604 -14.07957 -13.84241 -13.80123 -13.71409 -13.58785 -13.43654 -13.42391 -13.22637 -13.12435 -13.05052 -12.54102 -12.49447 -12.29519 -12.26669 -12.17637 -11.85018 -11.83237 -11.45664 -11.36704 -11.26003 -11.11431 -11.03655 -10.74834 -10.36750 -10.29363 -10.12616 -10.11181 -8.83841 0.04149 0.31610 1.14740 1.43780 1.46661 1.48280 1.49062 1.79883 1.90399 2.02205 2.06983 2.32214 2.52893 2.60862 2.68426 3.49161 3.56386 3.71800 3.84264 3.87492 3.96724 4.05168 4.07722 4.09480 4.12591 4.13188 4.21446 4.33509 4.40973 4.42482 4.54554 4.63220 4.66158 4.67866 4.75586 4.79726 4.81787 4.83276 4.85123 4.87348 4.91175 4.97365 5.10797 5.15002 5.18419 5.25679 5.30657 5.38981 5.40087 5.53987 5.57863 5.62694 5.66139 6.13488 6.39735 6.47689 6.56401 7.13816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.089 3.911 4 C -0.160 4.160 5 C -0.157 4.157 6 C 0.096 3.904 7 O -0.312 6.312 8 C 0.037 3.963 9 C 0.510 3.490 10 O -0.572 6.572 11 N -0.710 5.710 12 C 0.128 3.872 13 C -0.091 4.091 14 C -0.113 4.113 15 C -0.407 4.407 16 Si 1.041 2.959 17 C -0.456 4.456 18 C -0.464 4.464 19 C -0.407 4.407 20 C -0.116 4.116 21 C -0.088 4.088 22 O -0.549 6.549 23 Si 1.035 2.965 24 H -0.261 1.261 25 H -0.271 1.271 26 H -0.239 1.239 27 C -0.137 4.137 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.162 0.838 32 H 0.170 0.830 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.419 0.581 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.076 0.924 50 H 0.082 0.918 51 H 0.078 0.922 52 H 0.375 0.625 53 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.340 4.982 0.886 11.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.044 3.956 4 C -0.179 4.179 5 C -0.176 4.176 6 C 0.051 3.949 7 O -0.226 6.226 8 C -0.040 4.040 9 C 0.296 3.704 10 O -0.451 6.451 11 N -0.365 5.365 12 C 0.005 3.995 13 C -0.109 4.109 14 C -0.151 4.151 15 C -0.492 4.492 16 Si 1.234 2.766 17 C -0.563 4.563 18 C -0.570 4.570 19 C -0.492 4.492 20 C -0.117 4.117 21 C -0.196 4.196 22 O -0.356 6.356 23 Si 0.855 3.145 24 H -0.185 1.185 25 H -0.196 1.196 26 H -0.162 1.162 27 C -0.156 4.156 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.180 0.820 32 H 0.188 0.812 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.257 0.743 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.094 0.906 50 H 0.101 0.899 51 H 0.096 0.904 52 H 0.224 0.776 53 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.558 3.467 1.153 9.305 hybrid contribution -0.925 1.144 -0.175 1.482 sum -9.483 4.612 0.978 10.590 Atomic orbital electron populations 1.23361 0.76239 1.05593 1.02497 1.86080 1.23586 1.26629 1.89026 1.18976 0.91854 0.85424 0.99377 1.21410 1.01574 0.90827 1.04054 1.21404 0.92141 0.99950 1.04062 1.18718 0.91595 0.84216 1.00381 1.86093 1.35383 1.11759 1.89334 1.22729 0.92637 0.81844 1.06836 1.20557 0.88347 0.85529 0.75991 1.90771 1.16726 1.87435 1.50141 1.45799 1.11579 1.04426 1.74682 1.21490 0.93649 0.82971 1.01376 1.21870 0.96788 0.92928 0.99350 1.21789 0.98800 0.98245 0.96271 1.26579 1.07828 1.06151 1.08667 0.79399 0.66002 0.65481 0.65759 1.26187 1.08471 1.07805 1.13860 1.26283 1.07945 1.12442 1.10326 1.26953 1.07462 1.08319 1.06494 1.19422 0.96412 0.90688 1.05199 1.25294 0.92252 1.13433 0.88608 1.86633 1.74181 1.42501 1.32296 0.84213 0.78221 0.72314 0.79717 1.18521 1.19588 1.16214 1.20284 0.92857 0.97274 1.05151 0.91400 0.86850 0.91253 0.82011 0.81232 0.85855 0.85673 0.74288 0.92723 0.92568 0.88594 0.90967 0.92574 0.89855 0.90568 0.91160 0.91479 0.90789 0.91489 0.91463 0.91262 0.90560 0.89885 0.90366 0.77616 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.34 -1.50 10.50 -93.32 -0.98 -2.48 16 3 C 0.09 0.41 6.69 22.49 0.15 0.56 16 4 C -0.16 0.17 9.03 22.36 0.20 0.37 16 5 C -0.16 0.35 9.03 22.35 0.20 0.55 16 6 C 0.10 0.34 6.62 22.49 0.15 0.49 16 7 O -0.31 -1.28 8.56 -74.38 -0.64 -1.92 16 8 C 0.04 -0.16 5.22 71.24 0.37 0.21 16 9 C 0.51 1.04 7.91 87.66 0.69 1.74 16 10 O -0.57 -7.86 16.50 16.00 0.26 -7.60 16 11 N -0.71 3.11 5.37 -463.05 -2.49 0.62 16 12 C 0.13 -0.20 5.05 86.38 0.44 0.24 16 13 C -0.09 0.59 2.19 -9.59 -0.02 0.57 16 14 C -0.11 0.79 5.16 31.52 0.16 0.95 16 15 C -0.41 3.04 5.85 72.72 0.43 3.47 16 16 Si 1.04 -8.82 13.36 68.60 0.92 -7.90 16 17 C -0.46 2.90 8.65 113.37 0.98 3.88 16 18 C -0.46 2.10 8.65 113.37 0.98 3.08 16 19 C -0.41 2.40 5.29 72.99 0.39 2.78 16 20 C -0.12 -0.81 5.28 -19.78 -0.10 -0.91 16 21 C -0.09 -0.71 2.33 71.24 0.17 -0.54 16 22 O -0.55 -5.66 12.65 -148.98 -1.89 -7.55 16 23 Si 1.03 6.84 25.75 68.60 1.77 8.61 16 24 H -0.26 -2.05 6.73 99.48 0.67 -1.38 16 25 H -0.27 -2.37 7.11 99.48 0.71 -1.66 16 26 H -0.24 -1.15 7.11 99.48 0.71 -0.44 16 27 C -0.14 -0.98 8.59 22.35 0.19 -0.79 16 28 H 0.07 -0.47 7.66 -2.39 -0.02 -0.49 16 29 H 0.11 -0.80 8.14 -2.39 -0.02 -0.82 16 30 H 0.07 -0.50 7.66 -2.39 -0.02 -0.52 16 31 H 0.16 -1.15 6.29 -2.91 -0.02 -1.17 16 32 H 0.17 -1.75 6.29 -2.91 -0.02 -1.77 16 33 H 0.12 -1.30 7.65 -2.39 -0.02 -1.32 16 34 H 0.13 -1.36 7.67 -2.39 -0.02 -1.37 16 35 H 0.42 -4.98 7.84 -92.70 -0.73 -5.71 16 36 H 0.05 0.11 8.07 -2.39 -0.02 0.09 16 37 H 0.06 0.10 8.14 -2.39 -0.02 0.09 16 38 H 0.10 -0.90 8.13 -2.39 -0.02 -0.92 16 39 H 0.07 -0.66 7.55 -2.38 -0.02 -0.68 16 40 H 0.06 -0.26 8.04 -2.38 -0.02 -0.28 16 41 H 0.08 -0.70 8.04 -2.39 -0.02 -0.72 16 42 H 0.08 -0.49 8.04 -2.39 -0.02 -0.51 16 43 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 44 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 45 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 46 H 0.07 -0.24 7.96 -2.38 -0.02 -0.26 16 47 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 48 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 49 H 0.08 -0.32 8.03 -2.39 -0.02 -0.34 16 50 H 0.08 -0.49 8.06 -2.39 -0.02 -0.51 16 51 H 0.08 0.61 7.82 -2.39 -0.02 0.59 16 52 H 0.38 2.72 8.60 -74.06 -0.64 2.09 16 53 H 0.14 0.94 4.89 -2.91 -0.01 0.93 16 Total: 0.00 -23.26 425.37 3.72 -19.55 By element: Atomic # 1 Polarization: -19.28 SS G_CDS: 0.27 Total: -19.00 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 6.48 Total: 17.68 kcal Atomic # 7 Polarization: 3.11 SS G_CDS: -2.49 Total: 0.62 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -3.24 Total: -19.55 kcal Atomic # 14 Polarization: -1.98 SS G_CDS: 2.68 Total: 0.71 kcal Total: -23.26 3.72 -19.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_4974302.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.606 kcal (2) G-P(sol) polarization free energy of solvation -23.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds