Wall clock time and date at job start Tue Mar 9 2021 13:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35889 * 117.00314 * 2 1 4 4 C 1.38756 * 120.02886 * 359.97438 * 3 2 1 5 5 C 1.38196 * 120.05839 * 180.02562 * 4 3 2 6 6 C 1.38163 * 120.10570 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.96743 * 179.97438 * 6 5 4 8 8 O 1.42898 * 109.46994 * 105.02149 * 7 6 5 9 9 Si 1.86301 * 109.47484 * 345.02250 * 7 6 5 10 10 H 1.48494 * 109.47044 * 59.99751 * 9 7 6 11 11 H 1.48493 * 109.47064 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46614 * 300.00091 * 9 7 6 13 13 C 1.38786 * 120.05753 * 359.97438 * 6 5 4 14 14 O 1.35898 * 120.02684 * 179.97438 * 13 6 5 15 15 C 1.42898 * 116.99655 * 179.97438 * 14 13 6 16 16 C 1.50706 * 109.47060 * 179.97438 * 15 14 13 17 17 O 1.21281 * 119.99699 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00080 * 180.02562 * 16 15 14 19 19 C 1.46506 * 119.99969 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.47237 * 179.72043 * 19 18 16 21 21 C 1.53573 * 109.47298 * 66.45247 * 20 19 18 22 22 C 1.55142 * 111.29462 * 169.06014 * 21 20 19 23 23 Si 1.89338 * 101.34667 * 331.41516 * 22 21 20 24 24 C 1.86298 * 111.45914 * 120.85141 * 23 22 21 25 25 C 1.86298 * 111.45758 * 245.79617 * 23 22 21 26 26 C 1.55911 * 109.47189 * 186.49640 * 20 19 18 27 27 C 1.38612 * 119.94480 * 0.23153 * 13 6 5 28 28 H 1.08999 * 109.46670 * 60.00046 * 1 2 3 29 29 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47083 * 300.00108 * 1 2 3 31 31 H 1.08000 * 119.96624 * 0.02708 * 4 3 2 32 32 H 1.07992 * 119.94754 * 179.97438 * 5 4 3 33 33 H 1.08993 * 109.46710 * 225.01791 * 7 6 5 34 34 H 0.96701 * 113.99934 * 299.99409 * 8 7 6 35 35 H 1.09004 * 109.47454 * 60.00035 * 15 14 13 36 36 H 1.08998 * 109.47671 * 299.99815 * 15 14 13 37 37 H 0.97005 * 120.00161 * 359.72088 * 18 16 15 38 38 H 1.09001 * 109.46512 * 299.72412 * 19 18 16 39 39 H 1.08998 * 109.47174 * 59.71534 * 19 18 16 40 40 H 1.08996 * 109.46978 * 306.45199 * 20 19 18 41 41 H 1.09007 * 109.12789 * 289.54725 * 21 20 19 42 42 H 1.09005 * 109.12280 * 48.57219 * 21 20 19 43 43 H 1.08998 * 111.04876 * 89.42814 * 22 21 20 44 44 H 1.08998 * 111.05252 * 213.35911 * 22 21 20 45 45 H 1.09004 * 109.46992 * 60.00035 * 24 23 22 46 46 H 1.09002 * 109.46729 * 180.02562 * 24 23 22 47 47 H 1.08994 * 109.47456 * 299.99907 * 24 23 22 48 48 H 1.09005 * 109.47313 * 59.99743 * 25 23 22 49 49 H 1.09001 * 109.47335 * 179.97438 * 25 23 22 50 50 H 1.08997 * 109.47335 * 299.99813 * 25 23 22 51 51 H 1.08999 * 111.42569 * 316.88203 * 26 20 19 52 52 H 1.08993 * 111.42505 * 81.82823 * 26 20 19 53 53 H 1.08003 * 120.05421 * 179.74813 * 27 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2909 2.3749 -0.0005 5 6 1.9177 3.6065 -0.0011 6 6 3.2973 3.6820 -0.0016 7 6 3.9776 5.0267 -0.0028 8 8 4.5046 5.2950 1.2981 9 14 2.7438 6.3466 -0.4572 10 1 1.6377 6.3523 0.5335 11 1 3.4144 7.6715 -0.4589 12 1 2.1961 6.0677 -1.8090 13 6 4.0570 2.5205 -0.0011 14 8 5.4139 2.5955 -0.0021 15 6 6.1318 1.3600 -0.0009 16 6 7.6128 1.6395 -0.0030 17 8 8.0138 2.7841 -0.0057 18 7 8.4914 0.6176 -0.0028 19 6 9.9311 0.8893 -0.0043 20 6 10.6998 -0.4335 0.0033 21 6 10.4570 -1.1743 -1.3198 22 6 11.4211 -2.3797 -1.4758 23 14 12.9159 -1.7934 -0.4726 24 6 13.2989 -2.9626 0.9264 25 6 14.4058 -1.5308 -1.5598 26 6 12.2237 -0.1481 0.1681 27 6 3.4306 1.2840 -0.0049 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2124 2.3183 -0.0005 32 1 1.3283 4.5114 -0.0019 33 1 4.7895 5.0224 -0.7299 34 1 3.8365 5.3139 1.9969 35 1 5.8695 0.7864 -0.8899 36 1 5.8708 0.7889 0.8900 37 1 8.1707 -0.2979 0.0027 38 1 10.1927 1.4566 -0.8975 39 1 10.1927 1.4667 0.8824 40 1 10.3544 -1.0497 0.8334 41 1 9.4283 -1.5342 -1.3442 42 1 10.6114 -0.4839 -2.1492 43 1 10.9906 -3.2836 -1.0448 44 1 11.6872 -2.5356 -2.5212 45 1 13.5196 -3.9512 0.5236 46 1 14.1621 -2.5949 1.4812 47 1 12.4389 -3.0256 1.5931 48 1 14.1777 -0.7763 -2.3127 49 1 15.2450 -1.1942 -0.9511 50 1 14.6662 -2.4679 -2.0518 51 1 12.5420 0.6875 -0.4553 52 1 12.4875 0.0150 1.2130 53 1 4.0201 0.3791 -0.0086 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_4974312.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:26 Heat of formation + Delta-G solvation = -159.522516 kcal Electronic energy + Delta-G solvation = -30796.782746 eV Core-core repulsion = 26564.564175 eV Total energy + Delta-G solvation = -4232.218571 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.182 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.84479 -40.90726 -39.88126 -38.40948 -37.77251 -36.92478 -34.75384 -32.31859 -31.57894 -30.66840 -29.44317 -29.07862 -28.38570 -28.36396 -26.52382 -26.11966 -24.06422 -23.56328 -22.50138 -21.67191 -20.74121 -19.98305 -18.62673 -18.09091 -17.84853 -17.57128 -17.31976 -16.85211 -16.71833 -16.58903 -16.24178 -15.92343 -15.72265 -15.45840 -15.18805 -15.07395 -14.71234 -14.57545 -14.42001 -13.92172 -13.84976 -13.80392 -13.73325 -13.46682 -13.44089 -13.34014 -13.23173 -13.18109 -13.12748 -12.53799 -12.47986 -12.26957 -12.19697 -12.19035 -11.98445 -11.86417 -11.64915 -11.59098 -11.38070 -11.10781 -10.75221 -10.37711 -10.32803 -10.31007 -10.14085 -9.72217 -9.11879 0.17066 0.28218 1.17146 1.41384 1.42848 1.45009 1.52742 1.78508 1.91915 2.01882 2.06516 2.23270 2.54550 2.59230 2.67369 3.53373 3.60500 3.68359 3.82374 3.83796 3.94109 4.01380 4.04197 4.05292 4.10353 4.15153 4.32550 4.39208 4.39954 4.43797 4.52826 4.61960 4.65041 4.66777 4.76594 4.78847 4.81547 4.83093 4.84599 4.86949 4.89530 5.00338 5.13628 5.20959 5.24241 5.24697 5.28460 5.37954 5.44273 5.53167 5.56954 5.62083 5.65704 6.12011 6.33803 6.43991 6.79418 7.10585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.164 3.836 4 C -0.239 4.239 5 C -0.049 4.049 6 C -0.200 4.200 7 C -0.076 4.076 8 O -0.555 6.555 9 Si 0.990 3.010 10 H -0.232 1.232 11 H -0.280 1.280 12 H -0.252 1.252 13 C 0.179 3.821 14 O -0.301 6.301 15 C 0.035 3.965 16 C 0.510 3.490 17 O -0.570 6.570 18 N -0.710 5.710 19 C 0.128 3.872 20 C -0.091 4.091 21 C -0.114 4.114 22 C -0.407 4.407 23 Si 1.041 2.959 24 C -0.456 4.456 25 C -0.462 4.462 26 C -0.408 4.408 27 C -0.251 4.251 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.095 0.905 34 H 0.384 0.616 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.419 0.581 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.076 0.924 52 H 0.082 0.918 53 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 -7.510 0.114 8.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.118 3.882 4 C -0.257 4.257 5 C -0.067 4.067 6 C -0.201 4.201 7 C -0.185 4.185 8 O -0.361 6.361 9 Si 0.812 3.188 10 H -0.155 1.155 11 H -0.205 1.205 12 H -0.176 1.176 13 C 0.132 3.868 14 O -0.213 6.213 15 C -0.043 4.043 16 C 0.296 3.704 17 O -0.449 6.449 18 N -0.365 5.365 19 C 0.005 3.995 20 C -0.109 4.109 21 C -0.152 4.152 22 C -0.492 4.492 23 Si 1.234 2.766 24 C -0.563 4.563 25 C -0.569 4.569 26 C -0.492 4.492 27 C -0.270 4.270 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.087 0.913 31 H 0.174 0.826 32 H 0.168 0.832 33 H 0.113 0.887 34 H 0.233 0.767 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.257 0.743 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.095 0.905 52 H 0.101 0.899 53 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.202 -6.093 -0.440 6.897 hybrid contribution -0.311 -0.627 0.307 0.764 sum -3.513 -6.720 -0.133 7.584 Atomic orbital electron populations 1.23401 0.76032 1.05738 1.02626 1.86052 1.23725 1.26510 1.87944 1.18855 0.91673 0.84929 0.92771 1.21386 1.01589 0.91303 1.11448 1.20936 0.92211 0.98818 0.94747 1.19702 0.93429 0.94481 1.12487 1.24976 1.05941 0.98840 0.88712 1.86564 1.38886 1.93717 1.16965 0.85189 0.76635 0.75870 0.81071 1.15461 1.20519 1.17605 1.18560 0.81778 0.93105 0.93331 1.86230 1.15410 1.31603 1.88048 1.22744 0.88469 0.86498 1.06605 1.20494 0.88579 0.85220 0.76076 1.90775 1.80819 1.23267 1.49999 1.45798 1.06459 1.09486 1.74713 1.21514 0.78295 0.98287 1.01407 1.21875 0.95369 0.94328 0.99371 1.21792 1.00506 0.96578 0.96281 1.26591 1.13466 1.00464 1.08728 0.79399 0.65763 0.65640 0.65800 1.26179 1.05278 1.10992 1.13841 1.26263 1.15612 1.04700 1.10307 1.26968 0.99101 1.16652 1.06521 1.20576 0.93370 0.97494 1.15610 0.91378 0.86448 0.91344 0.82590 0.83170 0.88667 0.76745 0.85978 0.86129 0.74332 0.92621 0.92606 0.88671 0.91148 0.92515 0.89898 0.90492 0.91090 0.91392 0.90853 0.91464 0.91379 0.91184 0.90512 0.89871 0.82786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.46 10.49 -92.30 -0.97 -1.42 16 3 C 0.16 0.43 6.68 22.50 0.15 0.58 16 4 C -0.24 -0.07 9.04 22.38 0.20 0.13 16 5 C -0.05 -0.07 8.65 22.24 0.19 0.13 16 6 C -0.20 -1.11 5.27 -19.75 -0.10 -1.21 16 7 C -0.08 -0.49 2.37 71.24 0.17 -0.32 16 8 O -0.55 -4.79 12.88 -148.98 -1.92 -6.71 16 9 Si 0.99 1.80 25.49 68.60 1.75 3.55 16 10 H -0.23 0.41 6.73 99.48 0.67 1.08 16 11 H -0.28 -1.71 7.11 99.48 0.71 -1.00 16 12 H -0.25 -0.52 7.11 99.48 0.71 0.19 16 13 C 0.18 1.18 6.66 22.49 0.15 1.33 16 14 O -0.30 -2.84 9.00 -73.36 -0.66 -3.50 16 15 C 0.03 0.03 5.22 71.24 0.37 0.41 16 16 C 0.51 3.30 7.91 87.66 0.69 3.99 16 17 O -0.57 -10.44 16.50 16.00 0.26 -10.18 16 18 N -0.71 0.61 5.37 -463.05 -2.49 -1.87 16 19 C 0.13 0.14 5.05 86.38 0.44 0.58 16 20 C -0.09 0.40 2.19 -9.59 -0.02 0.38 16 21 C -0.11 0.56 5.16 31.52 0.16 0.73 16 22 C -0.41 2.42 5.85 72.72 0.43 2.85 16 23 Si 1.04 -7.55 13.36 68.60 0.92 -6.64 16 24 C -0.46 2.41 8.65 113.37 0.98 3.40 16 25 C -0.46 1.71 8.65 113.37 0.98 2.69 16 26 C -0.41 1.77 5.29 72.99 0.39 2.15 16 27 C -0.25 -0.77 8.97 22.46 0.20 -0.57 16 28 H 0.07 -0.51 7.66 -2.39 -0.02 -0.53 16 29 H 0.12 -1.05 8.14 -2.39 -0.02 -1.07 16 30 H 0.07 -0.52 7.66 -2.39 -0.02 -0.54 16 31 H 0.16 -0.77 6.29 -2.91 -0.02 -0.79 16 32 H 0.15 -0.44 4.88 -2.91 -0.01 -0.46 16 33 H 0.10 0.93 7.82 -2.39 -0.02 0.91 16 34 H 0.38 0.06 8.70 -74.06 -0.64 -0.58 16 35 H 0.12 -0.62 7.65 -2.39 -0.02 -0.64 16 36 H 0.12 -0.56 7.67 -2.39 -0.02 -0.58 16 37 H 0.42 -3.47 7.84 -92.70 -0.73 -4.20 16 38 H 0.06 0.24 8.07 -2.39 -0.02 0.22 16 39 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.10 -0.68 8.13 -2.39 -0.02 -0.70 16 41 H 0.07 -0.47 7.55 -2.38 -0.02 -0.49 16 42 H 0.06 -0.16 8.04 -2.38 -0.02 -0.18 16 43 H 0.08 -0.56 8.04 -2.39 -0.02 -0.58 16 44 H 0.08 -0.39 8.04 -2.39 -0.02 -0.41 16 45 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 46 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 47 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 48 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 49 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 50 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 51 H 0.08 -0.21 8.03 -2.39 -0.02 -0.23 16 52 H 0.08 -0.37 8.06 -2.39 -0.02 -0.39 16 53 H 0.15 -0.24 6.30 -2.91 -0.02 -0.26 16 Total: 0.00 -25.00 425.95 3.65 -21.35 By element: Atomic # 1 Polarization: -13.09 SS G_CDS: 0.26 Total: -12.83 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 6.49 Total: 18.26 kcal Atomic # 7 Polarization: 0.61 SS G_CDS: -2.49 Total: -1.87 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -3.28 Total: -21.82 kcal Atomic # 14 Polarization: -5.75 SS G_CDS: 2.66 Total: -3.09 kcal Total: -25.00 3.65 -21.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_4974312.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.172 kcal (2) G-P(sol) polarization free energy of solvation -25.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds