Wall clock time and date at job start Tue Mar 9 2021 13:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99640 * 2 1 4 4 C 1.52996 * 112.84991 * 294.00481 * 3 2 1 5 5 F 1.39901 * 109.47193 * 195.94512 * 4 3 2 6 6 F 1.39901 * 109.47263 * 315.94518 * 4 3 2 7 7 F 1.39897 * 109.47039 * 75.94303 * 4 3 2 8 8 C 1.54053 * 113.68653 * 162.73394 * 3 2 1 9 9 C 1.53781 * 86.98684 * 270.87175 * 8 3 2 10 10 H 1.08995 * 113.61586 * 219.98095 * 9 8 3 11 11 N 1.46497 * 113.61379 * 89.16241 * 9 8 3 12 12 C 1.34771 * 120.00152 * 105.86890 * 11 9 8 13 13 O 1.21278 * 120.00176 * 359.97438 * 12 11 9 14 14 C 1.50709 * 120.00212 * 180.02562 * 12 11 9 15 15 N 1.46498 * 109.47245 * 179.97438 * 14 12 11 16 16 C 1.36829 * 125.06602 * 264.69725 * 15 14 12 17 17 C 1.34229 * 109.93956 * 179.81529 * 16 15 14 18 18 C 1.50708 * 126.50112 * 180.13229 * 17 16 15 19 19 O 1.42896 * 109.46890 * 255.35920 * 18 17 16 20 20 Si 1.86298 * 109.46807 * 15.35690 * 18 17 16 21 21 C 1.46490 * 107.00002 * 0.43374 * 17 16 15 22 22 C 1.39593 * 134.03520 * 179.76709 * 21 17 16 23 23 C 1.36665 * 119.76202 * 180.02562 * 22 21 17 24 24 C 1.38788 * 120.52787 * 359.94535 * 23 22 21 25 25 C 1.37791 * 120.66852 * 0.02562 * 24 23 22 26 26 C 1.37693 * 125.05740 * 84.99824 * 15 14 12 27 27 C 1.53780 * 113.61811 * 65.20498 * 3 2 1 28 28 H 1.09001 * 109.47036 * 64.84012 * 1 2 3 29 29 H 1.09003 * 109.47093 * 184.83241 * 1 2 3 30 30 H 1.08991 * 109.47476 * 304.83365 * 1 2 3 31 31 H 1.09003 * 113.61370 * 156.37021 * 8 3 2 32 32 H 1.09001 * 113.69906 * 25.38485 * 8 3 2 33 33 H 0.97006 * 119.99847 * 285.86078 * 11 9 8 34 34 H 1.09000 * 109.46672 * 300.00163 * 14 12 11 35 35 H 1.09005 * 109.47132 * 59.99564 * 14 12 11 36 36 H 1.08006 * 125.02582 * 359.97438 * 16 15 14 37 37 H 1.09001 * 109.46862 * 135.35567 * 18 17 16 38 38 H 0.96693 * 114.00612 * 59.99913 * 19 18 17 39 39 H 1.48494 * 110.00257 * 58.68173 * 20 18 17 40 40 H 1.48507 * 109.99732 * 179.97438 * 20 18 17 41 41 H 1.07993 * 120.11931 * 0.02769 * 22 21 17 42 42 H 1.07997 * 119.73177 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.66442 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.10860 * 179.97438 * 25 24 23 45 45 H 1.09005 * 113.61324 * 334.65153 * 27 3 2 46 46 H 1.08994 * 113.61628 * 203.74997 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7278 2.0815 -1.2880 5 9 2.6024 3.1697 -1.3781 6 9 1.9150 1.2402 -2.3899 7 9 0.4076 2.5442 -1.2736 8 6 3.4926 1.3230 0.4187 9 6 2.9979 1.4842 1.8658 10 1 3.5933 2.1810 2.4557 11 7 2.7667 0.2109 2.5523 12 6 3.6327 -0.2144 3.4933 13 8 4.6037 0.4568 3.7715 14 6 3.3951 -1.5247 4.1990 15 7 4.4690 -1.7595 5.1674 16 6 5.5921 -2.5044 4.9306 17 6 6.3728 -2.5152 6.0224 18 6 7.6977 -3.2182 6.1701 19 8 7.5274 -4.3933 6.9651 20 14 8.3389 -3.6946 4.4871 21 6 5.6894 -1.7202 7.0455 22 6 5.9884 -1.3720 8.3639 23 6 5.1179 -0.5937 9.0740 24 6 3.9390 -0.1456 8.4946 25 6 3.6245 -0.4770 7.1947 26 6 4.4956 -1.2683 6.4535 27 6 1.7209 2.1086 1.2791 28 1 -0.3633 0.4369 -0.9302 29 1 -0.3633 -1.0240 0.0866 30 1 -0.3634 0.5869 0.8434 31 1 4.0414 2.1879 0.0460 32 1 4.0104 0.3813 0.2367 33 1 1.9901 -0.3261 2.3296 34 1 2.4378 -1.4888 4.7190 35 1 3.3817 -2.3337 3.4685 36 1 5.8181 -3.0069 4.0017 37 1 8.4106 -2.5514 6.6552 38 1 6.9049 -5.0330 6.5933 39 1 8.4901 -2.4844 3.6399 40 1 9.6454 -4.3881 4.6189 41 1 6.9042 -1.7162 8.8209 42 1 5.3495 -0.3249 10.0940 43 1 3.2613 0.4690 9.0685 44 1 2.7045 -0.1237 6.7529 45 1 0.8092 1.8007 1.7912 46 1 1.7861 3.1879 1.1412 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17312452_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:55:41 Heat of formation + Delta-G solvation = -149.716725 kcal Electronic energy + Delta-G solvation = -36533.780452 eV Core-core repulsion = 31170.635887 eV Total energy + Delta-G solvation = -5363.144565 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.133 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -51.26542 -48.80450 -48.73601 -42.53768 -41.70987 -40.06982 -38.09052 -37.63819 -37.19400 -34.51995 -33.87845 -31.44897 -30.21905 -29.49224 -28.51909 -28.04287 -26.80370 -25.84612 -24.17470 -23.63575 -22.73608 -21.82847 -21.10169 -20.63723 -19.81118 -19.55253 -19.27386 -18.55106 -18.37239 -17.72809 -17.32174 -17.15550 -16.78912 -16.41596 -16.39960 -16.24755 -15.96112 -15.75398 -15.65619 -15.59086 -15.38367 -15.34557 -15.19056 -14.99223 -14.90872 -14.84590 -14.69516 -14.43953 -14.31288 -14.06362 -13.87744 -13.61604 -13.43420 -13.24116 -13.11729 -12.70177 -12.63630 -12.57384 -12.30581 -12.25059 -12.11237 -11.80793 -11.73367 -11.19182 -10.96441 -10.54281 -10.30034 -10.24773 -9.14406 -8.61309 -5.04750 0.15567 0.64263 1.34804 1.42019 1.42388 1.51633 1.64602 1.75904 2.00393 2.00919 2.20419 2.53609 2.59675 2.82485 2.95783 3.27567 3.38153 3.49430 3.59537 3.66762 3.71789 3.76464 3.89778 4.06506 4.11439 4.18660 4.22625 4.28537 4.31367 4.34743 4.42775 4.43398 4.49203 4.57555 4.61724 4.68475 4.72856 4.74164 4.79871 4.84060 4.89777 5.14535 5.33916 5.51621 5.67070 5.70652 5.74375 5.76544 6.20570 6.24538 6.45814 6.90065 7.10903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.339 6.339 3 C 0.045 3.955 4 C 0.431 3.569 5 F -0.179 7.179 6 F -0.187 7.187 7 F -0.184 7.184 8 C -0.132 4.132 9 C 0.135 3.865 10 H 0.104 0.896 11 N -0.691 5.691 12 C 0.496 3.504 13 O -0.569 6.569 14 C 0.088 3.912 15 N -0.466 5.466 16 C 0.080 3.920 17 C -0.225 4.225 18 C -0.040 4.040 19 O -0.560 6.560 20 Si 0.800 3.200 21 C -0.118 4.118 22 C -0.092 4.092 23 C -0.154 4.154 24 C -0.109 4.109 25 C -0.132 4.132 26 C 0.092 3.908 27 C -0.148 4.148 28 H 0.039 0.961 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.421 0.579 34 H 0.146 0.854 35 H 0.167 0.833 36 H 0.208 0.792 37 H 0.088 0.912 38 H 0.393 0.607 39 H -0.294 1.294 40 H -0.299 1.299 41 H 0.115 0.885 42 H 0.134 0.866 43 H 0.146 0.854 44 H 0.136 0.864 45 H 0.117 0.883 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.863 -3.293 -2.645 9.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.256 6.256 3 C 0.003 3.997 4 C 0.377 3.623 5 F -0.161 7.161 6 F -0.169 7.169 7 F -0.165 7.165 8 C -0.170 4.170 9 C 0.028 3.972 10 H 0.122 0.878 11 N -0.345 5.345 12 C 0.282 3.718 13 O -0.446 6.446 14 C -0.036 4.036 15 N -0.148 5.148 16 C -0.045 4.045 17 C -0.233 4.233 18 C -0.150 4.150 19 O -0.368 6.368 20 Si 0.706 3.294 21 C -0.122 4.122 22 C -0.111 4.111 23 C -0.173 4.173 24 C -0.128 4.128 25 C -0.152 4.152 26 C -0.013 4.013 27 C -0.186 4.186 28 H 0.057 0.943 29 H 0.140 0.860 30 H 0.091 0.909 31 H 0.141 0.859 32 H 0.112 0.888 33 H 0.259 0.741 34 H 0.164 0.836 35 H 0.184 0.816 36 H 0.224 0.776 37 H 0.105 0.895 38 H 0.243 0.757 39 H -0.222 1.222 40 H -0.227 1.227 41 H 0.133 0.867 42 H 0.152 0.848 43 H 0.163 0.837 44 H 0.154 0.846 45 H 0.135 0.865 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.279 -2.556 -2.917 8.248 hybrid contribution -0.293 0.972 -0.064 1.018 sum -7.572 -1.584 -2.982 8.290 Atomic orbital electron populations 1.23357 0.78433 1.05839 1.01732 1.88070 1.22137 1.21576 1.93848 1.24072 0.99872 0.86513 0.89292 1.21538 0.74145 0.78701 0.87938 1.93177 1.69443 1.56794 1.96644 1.93193 1.94874 1.71201 1.57613 1.93189 1.36751 1.89705 1.96854 1.23774 0.91241 1.05888 0.96107 1.21507 0.97015 0.86569 0.92091 0.87802 1.45493 1.28278 1.22209 1.38530 1.21494 0.82380 0.88367 0.79565 1.90817 1.30585 1.57947 1.65284 1.21997 0.91716 0.96479 0.93407 1.43429 1.19064 1.43055 1.09285 1.22060 0.86076 0.96710 0.99680 1.20775 0.99812 1.08162 0.94505 1.24559 0.95263 0.87761 1.07410 1.86449 1.68175 1.30097 1.52077 0.94155 0.81268 0.80672 0.73353 1.19367 0.95730 1.02106 0.95011 1.20440 0.99708 0.98078 0.92834 1.20907 0.95371 1.00125 1.00920 1.21128 0.97303 0.99861 0.94477 1.20258 0.99854 1.00432 0.94663 1.18379 0.97181 1.00108 0.85641 1.23978 1.00215 1.01915 0.92456 0.94253 0.85988 0.90880 0.85916 0.88770 0.74081 0.83620 0.81554 0.77585 0.89480 0.75689 1.22173 1.22657 0.86720 0.84778 0.83669 0.84632 0.86503 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 10.30 113.37 1.17 1.15 16 2 O -0.34 2.16 9.10 -148.98 -1.36 0.80 16 3 C 0.05 -0.24 0.85 -10.18 -0.01 -0.25 16 4 C 0.43 -0.19 2.52 71.98 0.18 -0.01 16 5 F -0.18 -0.15 15.81 44.97 0.71 0.57 16 6 F -0.19 -0.69 17.10 44.97 0.77 0.08 16 7 F -0.18 0.02 15.39 44.97 0.69 0.71 16 8 C -0.13 0.62 7.15 31.21 0.22 0.84 16 9 C 0.13 -0.78 4.30 45.52 0.20 -0.58 16 10 H 0.10 -0.19 7.50 -2.39 -0.02 -0.21 16 11 N -0.69 5.65 5.14 -440.04 -2.26 3.39 16 12 C 0.50 -1.38 7.90 87.66 0.69 -0.69 16 13 O -0.57 -5.10 16.04 -3.02 -0.05 -5.15 16 14 C 0.09 -0.79 6.48 85.64 0.56 -0.23 16 15 N -0.47 -0.08 2.27 -519.98 -1.18 -1.26 16 16 C 0.08 -0.02 9.89 83.00 0.82 0.80 16 17 C -0.23 -1.18 5.57 -18.63 -0.10 -1.28 16 18 C -0.04 -0.16 3.06 71.24 0.22 0.05 16 19 O -0.56 -2.25 12.88 -148.98 -1.92 -4.17 16 20 Si 0.80 -0.36 30.76 68.60 2.11 1.75 16 21 C -0.12 -1.14 6.35 -20.20 -0.13 -1.27 16 22 C -0.09 -0.91 10.05 22.23 0.22 -0.68 16 23 C -0.15 -1.03 9.97 22.03 0.22 -0.81 16 24 C -0.11 -0.47 10.01 22.30 0.22 -0.25 16 25 C -0.13 -0.55 10.00 22.37 0.22 -0.32 16 26 C 0.09 0.58 6.80 39.03 0.27 0.84 16 27 C -0.15 1.33 6.65 31.12 0.21 1.54 16 28 H 0.04 -0.24 6.69 -2.39 -0.02 -0.26 16 29 H 0.12 -1.65 8.14 -2.39 -0.02 -1.67 16 30 H 0.07 -0.97 6.55 -2.39 -0.02 -0.99 16 31 H 0.12 -0.60 7.02 -2.39 -0.02 -0.62 16 32 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.42 -5.74 7.63 -92.70 -0.71 -6.45 16 34 H 0.15 -2.07 8.14 -2.39 -0.02 -2.09 16 35 H 0.17 -2.85 8.12 -2.38 -0.02 -2.87 16 36 H 0.21 -1.85 6.35 -2.91 -0.02 -1.87 16 37 H 0.09 0.68 7.96 -2.39 -0.02 0.66 16 38 H 0.39 -2.05 8.70 -74.06 -0.64 -2.69 16 39 H -0.29 -1.75 7.11 99.48 0.71 -1.05 16 40 H -0.30 -2.02 7.11 99.48 0.71 -1.31 16 41 H 0.11 1.08 8.06 -2.91 -0.02 1.05 16 42 H 0.13 0.37 8.06 -2.91 -0.02 0.35 16 43 H 0.15 -0.13 8.06 -2.91 -0.02 -0.15 16 44 H 0.14 -0.17 8.06 -2.91 -0.02 -0.20 16 45 H 0.12 -1.46 6.67 -2.38 -0.02 -1.48 16 46 H 0.12 -1.21 8.05 -2.39 -0.02 -1.22 16 Total: 0.00 -30.28 394.46 2.45 -27.83 By element: Atomic # 1 Polarization: -23.15 SS G_CDS: -0.25 Total: -23.40 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 5.18 Total: -1.15 kcal Atomic # 7 Polarization: 5.57 SS G_CDS: -3.44 Total: 2.12 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -3.32 Total: -8.51 kcal Atomic # 9 Polarization: -0.82 SS G_CDS: 2.17 Total: 1.36 kcal Atomic # 14 Polarization: -0.36 SS G_CDS: 2.11 Total: 1.75 kcal Total: -30.28 2.45 -27.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17312452_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.882 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds