Wall clock time and date at job start Tue Mar 9 2021 15:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99590 * 2 1 4 4 O 1.20829 * 120.00025 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00085 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47223 * 180.02562 * 5 3 2 7 7 H 1.09004 * 112.90563 * 316.24673 * 6 5 3 8 8 C 1.53774 * 113.61652 * 87.50089 * 6 5 3 9 9 C 1.53781 * 87.08078 * 139.98036 * 8 6 5 10 10 H 1.09004 * 113.68924 * 89.13077 * 9 8 6 11 11 N 1.46505 * 113.61448 * 220.01386 * 9 8 6 12 12 C 1.34773 * 120.00241 * 252.50027 * 11 9 8 13 13 O 1.21685 * 120.00092 * 5.18241 * 12 11 9 14 14 C 1.46681 * 119.99749 * 184.91477 * 12 11 9 15 15 C 1.37876 * 126.23191 * 354.61194 * 14 12 11 16 16 C 1.39837 * 107.08196 * 180.02562 * 15 14 12 17 17 C 1.50703 * 126.06476 * 180.02562 * 16 15 14 18 18 O 1.42895 * 109.47599 * 300.00258 * 17 16 15 19 19 Si 1.86299 * 109.46942 * 180.02562 * 17 16 15 20 20 C 1.35451 * 107.86649 * 0.02562 * 16 15 14 21 21 N 1.35541 * 108.87159 * 359.73074 * 20 16 15 22 22 C 1.46499 * 125.67842 * 180.30544 * 21 20 16 23 23 C 1.53777 * 87.08108 * 334.56632 * 9 8 6 24 24 H 1.09005 * 109.46571 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47118 * 299.99155 * 1 2 3 26 26 H 1.08998 * 109.47807 * 60.00234 * 1 2 3 27 27 H 1.08996 * 109.47452 * 59.99836 * 5 3 2 28 28 H 1.09007 * 109.46978 * 300.00089 * 5 3 2 29 29 H 1.08996 * 113.61932 * 25.43201 * 8 6 5 30 30 H 1.09003 * 113.61565 * 254.52619 * 8 6 5 31 31 H 0.97007 * 119.99559 * 72.49608 * 11 9 8 32 32 H 1.07998 * 126.45876 * 359.97438 * 15 14 12 33 33 H 1.09001 * 109.46799 * 60.01007 * 17 16 15 34 34 H 0.96706 * 113.99823 * 300.00483 * 18 17 16 35 35 H 1.48498 * 110.00177 * 180.02562 * 19 17 16 36 36 H 1.48500 * 110.00185 * 301.32181 * 19 17 16 37 37 H 1.07999 * 125.56696 * 179.97438 * 20 16 15 38 38 H 1.09005 * 109.46963 * 274.17651 * 22 21 20 39 39 H 1.09000 * 109.47265 * 34.17491 * 22 21 20 40 40 H 1.08999 * 109.47113 * 154.17461 * 22 21 20 41 41 H 1.09000 * 113.61387 * 139.98326 * 23 9 8 42 42 H 1.09000 * 113.61610 * 270.88300 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4031 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 6 3.9999 2.7423 0.0002 7 1 3.4244 3.3552 -0.6936 8 6 4.1162 3.3495 1.4081 9 6 5.3815 4.0668 0.9087 10 1 5.1851 5.0422 0.4634 11 7 6.4653 4.0993 1.8940 12 6 6.7757 5.2535 2.5166 13 8 6.0966 6.2462 2.3318 14 6 7.9285 5.3116 3.4217 15 6 8.7154 4.2475 3.8083 16 6 9.6929 4.7519 4.6718 17 6 10.7791 3.9534 5.3454 18 8 10.1886 2.9490 6.1728 19 14 11.8230 5.0857 6.3935 20 6 9.4902 6.0854 4.7953 21 7 8.4244 6.4390 4.0362 22 6 7.8881 7.7950 3.8952 23 6 5.5206 2.9351 -0.1231 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 3.9557 0.7811 -0.8908 28 1 3.9563 0.7807 0.8892 29 1 4.3109 2.6123 2.1870 30 1 3.3007 4.0275 1.6600 31 1 6.9595 3.2899 2.0982 32 1 8.5984 3.2183 3.5026 33 1 11.4041 3.4795 4.5885 34 1 9.6178 3.2996 6.8703 35 1 12.8983 4.3105 7.0628 36 1 12.4172 6.1540 5.5504 37 1 10.0835 6.7579 5.3970 38 1 7.1854 7.9937 4.7045 39 1 8.7051 8.5152 3.9384 40 1 7.3747 7.8849 2.9379 41 1 5.8388 3.2785 -1.1075 42 1 6.0993 2.0845 0.2370 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_10803934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:24:25 Heat of formation + Delta-G solvation = -76.994004 kcal Electronic energy + Delta-G solvation = -25077.300174 eV Core-core repulsion = 21218.978737 eV Total energy + Delta-G solvation = -3858.321436 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.55753 -41.67233 -40.74390 -39.23449 -37.64741 -37.48676 -35.10281 -33.76106 -31.86292 -30.59393 -28.46134 -28.22911 -26.70076 -25.83528 -25.01472 -23.25976 -21.79318 -21.27471 -20.85850 -20.15342 -18.83385 -18.54548 -17.87702 -17.68526 -17.55771 -16.96772 -16.79657 -16.61983 -16.13445 -15.83936 -15.51368 -15.41294 -15.01087 -14.80871 -14.53683 -14.39834 -14.08130 -13.91465 -13.56303 -13.43544 -13.35363 -13.24157 -13.13744 -12.92198 -12.80595 -12.26402 -12.14646 -11.91545 -11.87644 -11.81543 -11.48254 -11.33667 -11.10612 -10.31360 -10.15000 -9.68284 -9.25029 -4.92544 0.39856 1.18098 1.42022 1.54474 1.58376 1.74072 1.79411 2.05480 2.27040 2.34634 3.42682 3.48031 3.64872 3.71742 3.77525 3.82827 3.84051 3.90536 4.04151 4.23533 4.25728 4.27536 4.29939 4.36211 4.41517 4.47350 4.62694 4.68631 4.68977 4.69987 4.74500 4.78829 4.79147 4.85494 5.01279 5.08570 5.18815 5.26070 5.41044 5.54763 5.69222 5.89308 6.16503 6.47490 6.71701 6.91529 7.11755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.454 3.546 4 O -0.544 6.544 5 C -0.096 4.096 6 C -0.096 4.096 7 H 0.087 0.913 8 C -0.147 4.147 9 C 0.119 3.881 10 H 0.092 0.908 11 N -0.694 5.694 12 C 0.585 3.415 13 O -0.587 6.587 14 C -0.080 4.080 15 C -0.109 4.109 16 C -0.219 4.219 17 C -0.034 4.034 18 O -0.559 6.559 19 Si 0.775 3.225 20 C 0.033 3.967 21 N -0.414 5.414 22 C 0.061 3.939 23 C -0.118 4.118 24 H 0.128 0.872 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.417 0.583 32 H 0.160 0.840 33 H 0.103 0.897 34 H 0.393 0.607 35 H -0.304 1.304 36 H -0.283 1.283 37 H 0.199 0.801 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 -2.914 1.354 3.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.299 3.701 4 O -0.434 6.434 5 C -0.133 4.133 6 C -0.115 4.115 7 H 0.106 0.894 8 C -0.186 4.186 9 C 0.015 3.985 10 H 0.111 0.889 11 N -0.345 5.345 12 C 0.374 3.626 13 O -0.469 6.469 14 C -0.193 4.193 15 C -0.136 4.136 16 C -0.225 4.225 17 C -0.145 4.145 18 O -0.367 6.367 19 Si 0.681 3.319 20 C -0.104 4.104 21 N -0.086 5.086 22 C -0.079 4.079 23 C -0.156 4.156 24 H 0.146 0.854 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.119 0.881 30 H 0.066 0.934 31 H 0.255 0.745 32 H 0.177 0.823 33 H 0.121 0.879 34 H 0.242 0.758 35 H -0.232 1.232 36 H -0.210 1.210 37 H 0.216 0.784 38 H 0.104 0.896 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.392 -1.626 0.879 3.024 hybrid contribution -0.502 -0.220 -0.505 0.745 sum 1.891 -1.846 0.374 2.669 Atomic orbital electron populations 1.23471 0.75381 1.05448 1.02206 1.86511 1.24541 1.33482 1.83810 1.24594 0.93669 0.80801 0.71011 1.90685 1.68367 1.37536 1.46843 1.21540 0.84960 0.98423 1.08405 1.22137 0.97046 0.94552 0.97777 0.89431 1.23578 0.97268 1.00075 0.97654 1.22494 0.86476 0.99753 0.89824 0.88950 1.45542 1.36529 1.10851 1.41558 1.17293 0.82511 0.83578 0.79211 1.90778 1.53579 1.36584 1.65965 1.20099 1.02617 0.88203 1.08337 1.21416 0.95070 0.97925 0.99148 1.19910 1.02559 0.93678 1.06365 1.24427 0.97596 0.95494 0.97009 1.86437 1.67910 1.34567 1.47760 0.93967 0.79068 0.76944 0.81912 1.22320 0.92183 0.96627 0.99300 1.44034 1.23027 1.07881 1.33615 1.22417 1.01372 0.79253 1.04858 1.23374 0.94720 0.98013 0.99451 0.85404 0.92376 0.92249 0.84615 0.84985 0.88136 0.93370 0.74481 0.82271 0.87943 0.75755 1.23248 1.20958 0.78433 0.89599 0.87177 0.89869 0.89364 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.55 113.37 1.20 1.18 16 2 O -0.37 -0.83 10.57 -51.39 -0.54 -1.37 16 3 C 0.45 1.39 7.96 71.24 0.57 1.95 16 4 O -0.54 -5.81 15.51 21.96 0.34 -5.47 16 5 C -0.10 0.54 5.65 29.85 0.17 0.71 16 6 C -0.10 0.28 3.15 -10.27 -0.03 0.25 16 7 H 0.09 0.13 7.68 -2.39 -0.02 0.11 16 8 C -0.15 -0.02 7.43 31.12 0.23 0.21 16 9 C 0.12 -0.01 4.21 45.52 0.19 0.18 16 10 H 0.09 0.48 7.53 -2.39 -0.02 0.46 16 11 N -0.69 0.23 5.34 -444.00 -2.37 -2.14 16 12 C 0.58 3.81 7.77 86.45 0.67 4.48 16 13 O -0.59 -8.05 14.30 -4.30 -0.06 -8.11 16 14 C -0.08 -0.32 6.88 40.35 0.28 -0.05 16 15 C -0.11 -0.08 10.29 22.57 0.23 0.15 16 16 C -0.22 0.10 5.44 -20.12 -0.11 -0.01 16 17 C -0.03 0.05 3.02 71.24 0.22 0.27 16 18 O -0.56 0.37 12.88 -148.98 -1.92 -1.55 16 19 Si 0.77 -2.81 30.59 68.60 2.10 -0.71 16 20 C 0.03 -0.05 9.94 83.48 0.83 0.78 16 21 N -0.41 -0.88 3.16 -534.30 -1.69 -2.57 16 22 C 0.06 -0.04 10.64 127.77 1.36 1.32 16 23 C -0.12 0.81 7.39 31.12 0.23 1.04 16 24 H 0.13 -0.81 8.14 -2.38 -0.02 -0.82 16 25 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 26 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 27 H 0.14 -1.39 8.14 -2.39 -0.02 -1.41 16 28 H 0.13 -1.32 7.84 -2.38 -0.02 -1.34 16 29 H 0.10 -0.29 7.89 -2.39 -0.02 -0.30 16 30 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.42 -2.59 7.63 -92.70 -0.71 -3.30 16 32 H 0.16 -0.53 7.45 -2.91 -0.02 -0.56 16 33 H 0.10 -0.03 7.96 -2.39 -0.02 -0.05 16 34 H 0.39 -3.20 8.70 -74.05 -0.64 -3.84 16 35 H -0.30 -1.40 7.11 99.48 0.71 -0.69 16 36 H -0.28 -0.17 7.11 99.48 0.71 0.54 16 37 H 0.20 -1.59 6.19 -2.91 -0.02 -1.61 16 38 H 0.09 -0.17 8.14 -2.38 -0.02 -0.19 16 39 H 0.11 -0.70 8.14 -2.39 -0.02 -0.72 16 40 H 0.08 0.37 6.23 -2.39 -0.01 0.35 16 41 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 42 H 0.12 -1.42 8.08 -2.39 -0.02 -1.44 16 Total: 0.00 -26.26 355.17 1.62 -24.64 By element: Atomic # 1 Polarization: -14.92 SS G_CDS: -0.26 Total: -15.18 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 6.03 Total: 12.46 kcal Atomic # 7 Polarization: -0.65 SS G_CDS: -4.06 Total: -4.71 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -2.18 Total: -16.50 kcal Atomic # 14 Polarization: -2.81 SS G_CDS: 2.10 Total: -0.71 kcal Total: -26.26 1.62 -24.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_10803934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.354 kcal (2) G-P(sol) polarization free energy of solvation -26.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds