Wall clock time and date at job start Tue Mar 9 2021 15:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 117.00024 * 2 1 4 4 O 1.20827 * 119.99905 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00211 * 179.97438 * 3 2 1 6 6 C 1.53005 * 109.47155 * 179.97438 * 5 3 2 7 7 H 1.09001 * 112.85017 * 316.19727 * 6 5 3 8 8 C 1.53950 * 113.66268 * 87.44393 * 6 5 3 9 9 C 1.53783 * 87.01954 * 139.93131 * 8 6 5 10 10 H 1.08995 * 113.61664 * 89.22622 * 9 8 6 11 11 N 1.46500 * 113.61695 * 220.05052 * 9 8 6 12 12 C 1.34777 * 119.99585 * 254.13778 * 11 9 8 13 13 O 1.21581 * 120.00327 * 359.97438 * 12 11 9 14 14 C 1.47530 * 119.99682 * 179.97438 * 12 11 9 15 15 C 1.40146 * 120.19268 * 180.02562 * 14 12 11 16 16 O 1.35643 * 120.14732 * 359.95328 * 15 14 12 17 17 C 1.42900 * 117.00153 * 180.02562 * 16 15 14 18 18 C 1.38712 * 119.69937 * 179.97438 * 15 14 12 19 19 C 1.38050 * 120.08357 * 359.74398 * 18 15 14 20 20 C 1.38556 * 120.39416 * 0.50964 * 19 18 15 21 21 C 1.50699 * 119.85081 * 179.76571 * 20 19 18 22 22 O 1.42892 * 109.47249 * 119.72877 * 21 20 19 23 23 Si 1.86298 * 109.47032 * 359.72262 * 21 20 19 24 24 C 1.37782 * 120.29748 * 359.48957 * 20 19 18 25 25 C 1.53784 * 87.17328 * 334.63766 * 9 8 6 26 26 H 1.08997 * 109.47332 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47299 * 300.00306 * 1 2 3 28 28 H 1.09004 * 109.47143 * 59.99758 * 1 2 3 29 29 H 1.09002 * 109.46766 * 60.00426 * 5 3 2 30 30 H 1.08994 * 109.47271 * 300.00231 * 5 3 2 31 31 H 1.08999 * 113.61884 * 25.41397 * 8 6 5 32 32 H 1.08997 * 113.67071 * 254.45576 * 8 6 5 33 33 H 0.97001 * 120.00230 * 74.12750 * 11 9 8 34 34 H 1.08997 * 109.47559 * 179.97438 * 17 16 15 35 35 H 1.09000 * 109.47267 * 300.00224 * 17 16 15 36 36 H 1.09003 * 109.46946 * 59.99975 * 17 16 15 37 37 H 1.08000 * 119.95579 * 180.02562 * 18 15 14 38 38 H 1.08002 * 119.80491 * 180.25636 * 19 18 15 39 39 H 1.09004 * 109.46453 * 239.72945 * 21 20 19 40 40 H 0.96703 * 114.00176 * 299.99748 * 22 21 20 41 41 H 1.48506 * 109.99834 * 58.68765 * 23 21 20 42 42 H 1.48502 * 110.00011 * 180.02562 * 23 21 20 43 43 H 1.08000 * 120.04503 * 180.22744 * 24 20 19 44 44 H 1.08996 * 113.62019 * 139.93554 * 25 9 8 45 45 H 1.08999 * 113.61727 * 270.84606 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0002 2.7422 -0.0002 7 1 3.4252 3.3531 -0.6961 8 6 4.1144 3.3534 1.4081 9 6 5.3811 4.0677 0.9079 10 1 5.1851 5.0424 0.4612 11 7 6.4642 4.1012 1.8938 12 6 6.7538 5.2491 2.5379 13 8 6.1166 6.2569 2.3004 14 6 7.8441 5.2826 3.5312 15 6 8.1484 6.4739 4.2038 16 8 7.4423 7.6025 3.9438 17 6 7.8096 8.7788 4.6674 18 6 9.1753 6.4938 5.1361 19 6 9.8899 5.3432 5.4030 20 6 9.5956 4.1646 4.7365 21 6 10.3870 2.9171 5.0337 22 8 9.5088 1.9007 5.5212 23 14 11.6781 3.2931 6.3230 24 6 8.5789 4.1268 3.8074 25 6 5.5210 2.9348 -0.1226 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.9564 0.7806 -0.8892 30 1 3.9558 0.7810 0.8907 31 1 4.3076 2.6180 2.1891 32 1 3.2997 4.0331 1.6576 33 1 6.9727 3.2971 2.0832 34 1 7.1682 9.6066 4.3649 35 1 7.6922 8.5994 5.7361 36 1 8.8489 9.0276 4.4528 37 1 9.4131 7.4094 5.6571 38 1 10.6858 5.3627 6.1328 39 1 10.8739 2.5701 4.1223 40 1 9.0404 2.1414 6.3322 41 1 11.0290 3.7974 7.5598 42 1 12.4659 2.0709 6.6245 43 1 8.3506 3.2051 3.2929 44 1 5.8399 3.2768 -1.1071 45 1 6.0992 2.0845 0.2391 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_12496546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:25:19 Heat of formation + Delta-G solvation = -131.541769 kcal Electronic energy + Delta-G solvation = -28773.317309 eV Core-core repulsion = 24531.148082 eV Total energy + Delta-G solvation = -4242.169226 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.89210 -41.57540 -40.59991 -39.24341 -39.16304 -37.50246 -37.21097 -34.89828 -32.74182 -31.85712 -31.30307 -28.59835 -28.35779 -26.70693 -26.14843 -25.76882 -24.11903 -22.61116 -21.74377 -21.53427 -20.54667 -19.45352 -18.60944 -18.39582 -18.16008 -17.83249 -17.57072 -17.18646 -16.88036 -16.73625 -16.20360 -16.11532 -15.95338 -15.82340 -15.80125 -14.84621 -14.81224 -14.60009 -14.51356 -14.45650 -13.93260 -13.55953 -13.48597 -13.41231 -13.35734 -13.09927 -12.93232 -12.76743 -12.42693 -12.22809 -12.13698 -12.04811 -11.87928 -11.82252 -11.66747 -11.48239 -11.33442 -10.98691 -10.54018 -10.25916 -9.98305 -9.28484 -4.87877 -0.25704 0.22569 1.17215 1.35395 1.63633 1.75425 1.77759 2.01069 2.14538 2.27761 2.68188 3.42681 3.42760 3.47696 3.58509 3.64938 3.74680 3.76257 3.83788 3.90081 3.99235 4.16305 4.24865 4.26543 4.29264 4.30715 4.35009 4.42348 4.46994 4.62128 4.65768 4.67547 4.68399 4.72276 4.74398 4.81072 4.85270 4.94259 5.01807 5.08910 5.11903 5.27139 5.28607 5.40768 5.57538 5.60038 6.30760 6.53122 6.54679 6.70892 7.23580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.454 3.546 4 O -0.545 6.545 5 C -0.096 4.096 6 C -0.096 4.096 7 H 0.086 0.914 8 C -0.148 4.148 9 C 0.116 3.884 10 H 0.088 0.912 11 N -0.704 5.704 12 C 0.555 3.445 13 O -0.569 6.569 14 C -0.197 4.197 15 C 0.169 3.831 16 O -0.315 6.315 17 C 0.011 3.989 18 C -0.213 4.213 19 C -0.043 4.043 20 C -0.164 4.164 21 C -0.070 4.070 22 O -0.546 6.546 23 Si 0.758 3.242 24 C -0.014 4.014 25 C -0.116 4.116 26 H 0.128 0.872 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.099 0.901 32 H 0.044 0.956 33 H 0.414 0.586 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.133 0.867 40 H 0.386 0.614 41 H -0.283 1.283 42 H -0.306 1.306 43 H 0.154 0.846 44 H 0.088 0.912 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.508 -3.675 1.214 7.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.299 3.701 4 O -0.435 6.435 5 C -0.133 4.133 6 C -0.115 4.115 7 H 0.105 0.895 8 C -0.187 4.187 9 C 0.011 3.989 10 H 0.106 0.894 11 N -0.356 5.356 12 C 0.344 3.656 13 O -0.449 6.449 14 C -0.201 4.201 15 C 0.120 3.880 16 O -0.226 6.226 17 C -0.083 4.083 18 C -0.231 4.231 19 C -0.060 4.060 20 C -0.165 4.165 21 C -0.180 4.180 22 O -0.354 6.354 23 Si 0.664 3.336 24 C -0.033 4.033 25 C -0.154 4.154 26 H 0.146 0.854 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.118 0.882 32 H 0.063 0.937 33 H 0.252 0.748 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.179 0.821 38 H 0.174 0.826 39 H 0.151 0.849 40 H 0.235 0.765 41 H -0.209 1.209 42 H -0.234 1.234 43 H 0.172 0.828 44 H 0.107 0.893 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.167 -3.111 1.166 7.005 hybrid contribution -1.513 -0.110 0.762 1.698 sum 4.654 -3.221 1.928 5.979 Atomic orbital electron populations 1.23472 0.75392 1.05452 1.02192 1.86510 1.24529 1.33449 1.83815 1.24604 0.93681 0.80803 0.71008 1.90687 1.68377 1.37567 1.46841 1.21539 0.84942 0.98358 1.08427 1.22166 0.97152 0.94537 0.97618 0.89526 1.23610 0.97340 1.00029 0.97726 1.22445 0.86722 0.99580 0.90111 0.89392 1.45766 1.36408 1.11943 1.41510 1.18396 0.82985 0.83398 0.80869 1.90810 1.52908 1.35203 1.65937 1.19440 1.02612 0.93993 1.04086 1.19461 0.90054 0.86223 0.92212 1.86338 1.56082 1.17621 1.62599 1.23440 1.02877 0.85001 0.96964 1.21460 0.98255 1.01759 1.01654 1.21285 0.97017 0.91181 0.96545 1.20188 0.99932 0.96341 1.00032 1.25076 0.97605 0.87057 1.08224 1.86571 1.60229 1.41932 1.46637 0.94204 0.79592 0.82590 0.77175 1.21118 0.91814 0.95868 0.94485 1.23353 0.94628 0.97907 0.99470 0.85359 0.92432 0.92246 0.84487 0.85008 0.88228 0.93669 0.74752 0.87606 0.91020 0.90579 0.82135 0.82597 0.84908 0.76464 1.20940 1.23396 0.82835 0.89296 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.20 16 2 O -0.37 -1.06 10.57 -51.38 -0.54 -1.61 16 3 C 0.45 1.78 7.96 71.24 0.57 2.35 16 4 O -0.54 -6.39 15.51 21.96 0.34 -6.05 16 5 C -0.10 0.45 5.65 29.85 0.17 0.62 16 6 C -0.10 0.15 3.15 -10.21 -0.03 0.12 16 7 H 0.09 0.25 7.68 -2.39 -0.02 0.23 16 8 C -0.15 -0.30 7.45 31.18 0.23 -0.07 16 9 C 0.12 0.23 4.21 45.52 0.19 0.42 16 10 H 0.09 0.72 7.50 -2.39 -0.02 0.70 16 11 N -0.70 -0.99 5.31 -443.21 -2.35 -3.34 16 12 C 0.55 5.23 7.76 86.69 0.67 5.90 16 13 O -0.57 -10.87 14.78 16.95 0.25 -10.62 16 14 C -0.20 -1.02 5.89 -20.01 -0.12 -1.13 16 15 C 0.17 0.96 6.70 22.85 0.15 1.11 16 16 O -0.31 -2.96 8.57 -68.66 -0.59 -3.55 16 17 C 0.01 -0.01 9.81 113.37 1.11 1.11 16 18 C -0.21 0.28 9.03 22.34 0.20 0.49 16 19 C -0.04 0.18 8.66 22.30 0.19 0.38 16 20 C -0.16 0.61 5.39 -19.90 -0.11 0.50 16 21 C -0.07 0.38 2.81 71.24 0.20 0.58 16 22 O -0.55 1.38 12.76 -148.98 -1.90 -0.52 16 23 Si 0.76 -4.22 29.77 68.60 2.04 -2.18 16 24 C -0.01 0.02 9.09 22.52 0.20 0.23 16 25 C -0.12 0.65 7.39 31.12 0.23 0.88 16 26 H 0.13 -0.74 8.14 -2.39 -0.02 -0.76 16 27 H 0.06 0.07 8.13 -2.39 -0.02 0.05 16 28 H 0.06 0.05 8.13 -2.39 -0.02 0.03 16 29 H 0.14 -1.32 8.14 -2.39 -0.02 -1.34 16 30 H 0.13 -1.20 7.85 -2.39 -0.02 -1.22 16 31 H 0.10 -0.11 7.90 -2.39 -0.02 -0.13 16 32 H 0.04 0.38 8.14 -2.39 -0.02 0.37 16 33 H 0.41 -2.31 6.74 -92.71 -0.63 -2.93 16 34 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.07 -0.28 7.66 -2.39 -0.02 -0.30 16 36 H 0.08 -0.35 7.66 -2.39 -0.02 -0.36 16 37 H 0.16 -1.01 6.30 -2.91 -0.02 -1.02 16 38 H 0.16 -1.45 4.85 -2.91 -0.01 -1.47 16 39 H 0.13 -1.04 7.96 -2.38 -0.02 -1.06 16 40 H 0.39 -2.78 8.70 -74.06 -0.64 -3.42 16 41 H -0.28 0.47 7.11 99.48 0.71 1.17 16 42 H -0.31 -0.91 7.11 99.48 0.71 -0.21 16 43 H 0.15 -0.98 6.40 -2.91 -0.02 -1.00 16 44 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 45 H 0.12 -1.35 8.07 -2.39 -0.02 -1.37 16 Total: 0.00 -30.12 375.23 2.12 -27.99 By element: Atomic # 1 Polarization: -14.61 SS G_CDS: -0.19 Total: -14.81 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 5.07 Total: 14.68 kcal Atomic # 7 Polarization: -0.99 SS G_CDS: -2.35 Total: -3.34 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -2.44 Total: -22.35 kcal Atomic # 14 Polarization: -4.22 SS G_CDS: 2.04 Total: -2.18 kcal Total: -30.12 2.12 -27.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_12496546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.547 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds