Wall clock time and date at job start Tue Mar 9 2021 15:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47248 * 180.02562 * 5 3 2 7 7 H 1.08996 * 112.84904 * 316.19618 * 6 5 3 8 8 C 1.53789 * 113.61438 * 87.50222 * 6 5 3 9 9 C 1.53782 * 87.08138 * 139.98021 * 8 6 5 10 10 H 1.09000 * 113.68657 * 89.12466 * 9 8 6 11 11 N 1.46488 * 113.61385 * 220.01540 * 9 8 6 12 12 C 1.34779 * 120.00628 * 252.49876 * 11 9 8 13 13 O 1.21628 * 119.99439 * 0.02562 * 12 11 9 14 14 C 1.47285 * 120.00458 * 180.02562 * 12 11 9 15 15 C 1.40368 * 120.04873 * 180.02562 * 14 12 11 16 16 O 1.35682 * 120.13571 * 359.97438 * 15 14 12 17 17 C 1.38312 * 119.72957 * 179.97438 * 15 14 12 18 18 C 1.39568 * 119.81449 * 359.97438 * 17 15 14 19 19 C 1.47570 * 119.95868 * 180.02562 * 18 17 15 20 20 C 1.36102 * 125.94408 * 180.02562 * 19 18 17 21 21 C 1.40795 * 106.73362 * 179.97438 * 20 19 18 22 22 C 1.34838 * 107.04800 * 359.97438 * 21 20 19 23 23 C 1.50701 * 125.65201 * 179.97438 * 22 21 20 24 24 O 1.42899 * 109.46938 * 65.00087 * 23 22 21 25 25 Si 1.86299 * 109.47140 * 184.99925 * 23 22 21 26 26 O 1.34233 * 108.69521 * 359.73768 * 22 21 20 27 27 C 1.39961 * 120.08381 * 0.02562 * 18 17 15 28 28 C 1.36389 * 120.28153 * 359.69074 * 27 18 17 29 29 C 1.53778 * 87.08212 * 334.57025 * 9 8 6 30 30 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 31 31 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 32 32 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47488 * 300.00148 * 5 3 2 34 34 H 1.09001 * 109.47517 * 59.99934 * 5 3 2 35 35 H 1.08999 * 113.61224 * 254.53205 * 8 6 5 36 36 H 1.09003 * 113.61275 * 25.43293 * 8 6 5 37 37 H 0.97008 * 119.99729 * 72.50274 * 11 9 8 38 38 H 0.96700 * 113.99896 * 89.99816 * 16 15 14 39 39 H 1.08000 * 120.09236 * 179.97438 * 17 15 14 40 40 H 1.08001 * 126.63210 * 0.02949 * 20 19 18 41 41 H 1.08000 * 126.47836 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.47400 * 305.00064 * 23 22 21 43 43 H 0.96702 * 114.00280 * 59.99840 * 24 23 22 44 44 H 1.48502 * 109.99750 * 58.68392 * 25 23 22 45 45 H 1.48501 * 109.99861 * 179.97438 * 25 23 22 46 46 H 1.08010 * 119.86088 * 179.97438 * 27 18 17 47 47 H 1.08002 * 119.90808 * 180.29708 * 28 27 18 48 48 H 1.09007 * 113.60786 * 270.88353 * 29 9 8 49 49 H 1.08996 * 113.69662 * 139.99496 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 1 3.4247 3.3540 -0.6944 8 6 4.1165 3.3494 1.4083 9 6 5.3818 4.0666 0.9089 10 1 5.1854 5.0419 0.4635 11 7 6.4655 4.0989 1.8940 12 6 6.7761 5.2531 2.5168 13 8 6.1562 6.2678 2.2612 14 6 7.8660 5.2856 3.5069 15 6 8.1899 6.4870 4.1565 16 8 7.5008 7.6213 3.8742 17 6 9.2143 6.5099 5.0855 18 6 9.9184 5.3392 5.3712 19 6 11.0116 5.3599 6.3622 20 6 11.7748 4.2955 6.7321 21 6 12.6880 4.7665 7.6946 22 6 12.4414 6.0813 7.8635 23 6 13.1798 7.0000 8.8025 24 8 14.5398 7.1196 8.3804 25 14 12.3751 8.6802 8.7881 26 8 11.4325 6.4374 7.0529 27 6 9.5889 4.1455 4.7188 28 6 8.5756 4.1175 3.8063 29 6 5.5208 2.9350 -0.1231 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.9565 0.7806 0.8892 34 1 3.9557 0.7810 -0.8908 35 1 3.3009 4.0272 1.6602 36 1 4.3112 2.6120 2.1871 37 1 6.9597 3.2894 2.0981 38 1 6.7240 7.7590 4.4334 39 1 9.4687 7.4312 5.5885 40 1 11.6958 3.2851 6.3588 41 1 13.4434 4.1847 8.2019 42 1 13.1475 6.5903 9.8121 43 1 14.6447 7.4786 7.4886 44 1 10.9515 8.5649 9.1947 45 1 13.0937 9.5954 9.7107 46 1 10.1364 3.2417 4.9424 47 1 8.3233 3.1920 3.3101 48 1 6.0994 2.0843 0.2371 49 1 5.8392 3.2769 -1.1078 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_12807986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:25:33 Heat of formation + Delta-G solvation = -119.009180 kcal Electronic energy + Delta-G solvation = -34228.117095 eV Core-core repulsion = 29283.130709 eV Total energy + Delta-G solvation = -4944.986386 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.149 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.73731 -41.81028 -41.44981 -40.33398 -39.03084 -38.08329 -37.81745 -37.47898 -34.98260 -34.20505 -33.32143 -31.59500 -31.22700 -30.37973 -28.41433 -27.11534 -26.67182 -25.10803 -24.08423 -23.86992 -22.46590 -22.07369 -21.67202 -21.33238 -20.59558 -19.68579 -18.78095 -18.53481 -18.47695 -17.89247 -17.66255 -17.55675 -17.46377 -17.17062 -16.59415 -16.47328 -16.19864 -15.97122 -15.93176 -15.74416 -15.41297 -14.82223 -14.79014 -14.47736 -14.40493 -14.30618 -13.98077 -13.90964 -13.87189 -13.58518 -13.50282 -13.43177 -13.32956 -12.91545 -12.82699 -12.79463 -12.68765 -12.26704 -12.12878 -11.90861 -11.83937 -11.78643 -11.46040 -11.31030 -11.12257 -10.87396 -10.72832 -10.57923 -10.05379 -9.93425 -9.00557 -5.05280 -0.78131 0.16110 0.65173 1.13054 1.19426 1.40109 1.46342 1.74060 1.77812 1.86257 1.93283 2.11923 2.65221 3.03102 3.29565 3.41992 3.45201 3.50926 3.62508 3.68274 3.79113 3.85958 3.88058 3.92445 3.99762 4.02288 4.23100 4.26363 4.28028 4.31194 4.32685 4.41345 4.49495 4.63661 4.66437 4.69622 4.71035 4.76594 4.78293 4.83067 4.88653 4.90840 5.03747 5.08408 5.11657 5.12019 5.22629 5.28628 5.42738 5.43471 5.54709 5.61358 5.97415 6.52004 6.59297 6.69419 6.72946 7.20535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.453 3.547 4 O -0.546 6.546 5 C -0.095 4.095 6 C -0.098 4.098 7 H 0.083 0.917 8 C -0.146 4.146 9 C 0.116 3.884 10 H 0.087 0.913 11 N -0.699 5.699 12 C 0.554 3.446 13 O -0.568 6.568 14 C -0.179 4.179 15 C 0.158 3.842 16 O -0.496 6.496 17 C -0.153 4.153 18 C 0.025 3.975 19 C 0.005 3.995 20 C -0.172 4.172 21 C -0.183 4.183 22 C -0.054 4.054 23 C -0.023 4.023 24 O -0.540 6.540 25 Si 0.766 3.234 26 O -0.175 6.175 27 C -0.109 4.109 28 C -0.050 4.050 29 C -0.117 4.117 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.045 0.955 36 H 0.105 0.895 37 H 0.417 0.583 38 H 0.407 0.593 39 H 0.139 0.861 40 H 0.183 0.817 41 H 0.166 0.834 42 H 0.139 0.861 43 H 0.399 0.601 44 H -0.296 1.296 45 H -0.277 1.277 46 H 0.171 0.829 47 H 0.176 0.824 48 H 0.124 0.876 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.760 -9.769 -0.852 10.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.436 6.436 5 C -0.132 4.132 6 C -0.118 4.118 7 H 0.102 0.898 8 C -0.185 4.185 9 C 0.011 3.989 10 H 0.105 0.895 11 N -0.351 5.351 12 C 0.342 3.658 13 O -0.448 6.448 14 C -0.183 4.183 15 C 0.111 3.889 16 O -0.309 6.309 17 C -0.172 4.172 18 C 0.024 3.976 19 C -0.044 4.044 20 C -0.190 4.190 21 C -0.202 4.202 22 C -0.104 4.104 23 C -0.134 4.134 24 O -0.348 6.348 25 Si 0.671 3.329 26 O -0.073 6.073 27 C -0.127 4.127 28 C -0.068 4.068 29 C -0.155 4.155 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.064 0.936 36 H 0.123 0.877 37 H 0.257 0.743 38 H 0.267 0.733 39 H 0.156 0.844 40 H 0.200 0.800 41 H 0.183 0.817 42 H 0.156 0.844 43 H 0.250 0.750 44 H -0.223 1.223 45 H -0.203 1.203 46 H 0.188 0.812 47 H 0.193 0.807 48 H 0.143 0.857 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.089 -8.017 -0.450 8.604 hybrid contribution -0.857 -0.239 0.820 1.210 sum 2.232 -8.257 0.371 8.561 Atomic orbital electron populations 1.23466 0.75440 1.05437 1.02167 1.86510 1.24484 1.33511 1.83825 1.24651 0.93769 0.80768 0.70991 1.90688 1.68422 1.37587 1.46858 1.21547 0.84780 0.98350 1.08520 1.22144 0.97209 0.94571 0.97829 0.89819 1.23587 0.97176 1.00069 0.97668 1.22446 0.86761 0.99590 0.90144 0.89485 1.45736 1.36493 1.11186 1.41731 1.18333 0.82823 0.83615 0.81015 1.90826 1.53847 1.34877 1.65243 1.20544 1.00504 0.95114 1.02139 1.18530 0.92583 0.85170 0.92579 1.84727 1.44562 1.38742 1.62867 1.21574 0.97468 0.99323 0.98791 1.17961 0.91812 0.94444 0.93388 1.20593 0.99672 0.85542 0.98621 1.22242 0.96419 1.00624 0.99764 1.21837 1.02631 0.94125 1.01653 1.23227 0.92556 0.96870 0.97764 1.24395 0.85606 1.07006 0.96387 1.86530 1.21635 1.87570 1.39110 0.93354 0.75421 0.75519 0.88635 1.83924 1.42492 1.36448 1.44408 1.21073 0.98161 0.97402 0.96065 1.21188 0.92903 0.97146 0.95543 1.23371 0.94592 0.98070 0.99418 0.92335 0.92397 0.85386 0.84687 0.84601 0.93641 0.87705 0.74349 0.73293 0.84358 0.79963 0.81675 0.84407 0.75008 1.22274 1.20334 0.81174 0.80696 0.85738 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.37 -0.50 10.57 -51.42 -0.54 -1.04 16 3 C 0.45 0.97 7.96 71.24 0.57 1.53 16 4 O -0.55 -5.53 15.51 21.98 0.34 -5.19 16 5 C -0.10 0.67 5.65 29.85 0.17 0.84 16 6 C -0.10 0.39 3.15 -10.26 -0.03 0.36 16 7 H 0.08 0.10 7.68 -2.39 -0.02 0.08 16 8 C -0.15 0.20 7.43 31.12 0.23 0.43 16 9 C 0.12 -0.14 4.24 45.52 0.19 0.05 16 10 H 0.09 0.48 7.46 -2.39 -0.02 0.47 16 11 N -0.70 2.07 5.30 -443.45 -2.35 -0.28 16 12 C 0.55 2.91 7.75 86.62 0.67 3.58 16 13 O -0.57 -8.48 14.74 16.88 0.25 -8.23 16 14 C -0.18 -0.31 5.89 -19.97 -0.12 -0.43 16 15 C 0.16 0.81 6.71 22.81 0.15 0.96 16 16 O -0.50 -4.04 11.56 -69.00 -0.80 -4.84 16 17 C -0.15 -0.44 9.65 22.61 0.22 -0.23 16 18 C 0.02 0.00 5.87 -20.08 -0.12 -0.12 16 19 C 0.01 0.00 7.02 24.24 0.17 0.18 16 20 C -0.17 0.37 10.26 22.40 0.23 0.60 16 21 C -0.18 0.10 10.78 22.11 0.24 0.33 16 22 C -0.05 -0.04 6.20 24.90 0.15 0.12 16 23 C -0.02 0.03 2.98 71.24 0.21 0.25 16 24 O -0.54 0.94 12.88 -148.98 -1.92 -0.98 16 25 Si 0.77 -0.55 32.11 68.60 2.20 1.65 16 26 O -0.17 -0.48 8.79 -6.02 -0.05 -0.54 16 27 C -0.11 0.66 9.48 22.26 0.21 0.87 16 28 C -0.05 0.32 9.47 22.24 0.21 0.53 16 29 C -0.12 0.98 7.39 31.12 0.23 1.21 16 30 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 31 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 32 H 0.13 -0.89 8.14 -2.38 -0.02 -0.91 16 33 H 0.14 -1.64 7.84 -2.38 -0.02 -1.66 16 34 H 0.14 -1.59 8.14 -2.39 -0.02 -1.61 16 35 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.10 -0.57 7.90 -2.39 -0.02 -0.59 16 37 H 0.42 -4.67 6.73 -92.70 -0.62 -5.29 16 38 H 0.41 0.60 9.06 -74.06 -0.67 -0.07 16 39 H 0.14 0.38 7.90 -2.91 -0.02 0.36 16 40 H 0.18 -1.56 7.24 -2.91 -0.02 -1.58 16 41 H 0.17 -0.52 8.06 -2.91 -0.02 -0.54 16 42 H 0.14 -0.36 7.96 -2.39 -0.02 -0.38 16 43 H 0.40 -3.63 8.70 -74.06 -0.64 -4.28 16 44 H -0.30 -1.88 7.11 99.48 0.71 -1.17 16 45 H -0.28 -1.22 7.11 99.48 0.71 -0.52 16 46 H 0.17 -2.14 6.96 -2.91 -0.02 -2.16 16 47 H 0.18 -2.63 6.38 -2.91 -0.02 -2.65 16 48 H 0.12 -1.83 8.08 -2.38 -0.02 -1.85 16 49 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 Total: 0.00 -33.18 420.88 1.06 -32.12 By element: Atomic # 1 Polarization: -24.02 SS G_CDS: -0.86 Total: -24.88 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 4.79 Total: 12.20 kcal Atomic # 7 Polarization: 2.07 SS G_CDS: -2.35 Total: -0.28 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -2.72 Total: -20.81 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: 2.20 Total: 1.65 kcal Total: -33.18 1.06 -32.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_12807986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.884 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds