Wall clock time and date at job start Tue Mar 9 2021 15:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 116.99648 * 2 1 4 4 O 1.20824 * 119.99926 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99901 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47380 * 180.02562 * 5 3 2 7 7 H 1.09008 * 112.84912 * 43.80513 * 6 5 3 8 8 C 1.53781 * 113.61740 * 175.00221 * 6 5 3 9 9 C 1.53779 * 87.08234 * 140.06642 * 8 6 5 10 10 H 1.09000 * 113.61510 * 89.20303 * 9 8 6 11 11 N 1.46498 * 113.61166 * 220.01762 * 9 8 6 12 12 C 1.34777 * 119.99828 * 203.19166 * 11 9 8 13 13 O 1.21513 * 119.99898 * 0.28095 * 12 11 9 14 14 C 1.48173 * 120.00085 * 180.27625 * 12 11 9 15 15 N 1.32715 * 119.72036 * 359.72847 * 14 12 11 16 16 C 1.31525 * 121.63914 * 179.74730 * 15 14 12 17 17 C 1.38563 * 120.90301 * 0.52938 * 16 15 14 18 18 C 1.50703 * 120.31993 * 179.71319 * 17 16 15 19 19 O 1.42894 * 109.46981 * 245.02316 * 18 17 16 20 20 Si 1.86299 * 109.47270 * 5.02676 * 18 17 16 21 21 C 1.38623 * 119.35204 * 359.74161 * 17 16 15 22 22 C 1.38586 * 118.48996 * 359.97438 * 21 17 16 23 23 C 1.53783 * 87.17258 * 334.61120 * 9 8 6 24 24 H 1.08999 * 109.46949 * 299.99345 * 1 2 3 25 25 H 1.08994 * 109.47360 * 59.99739 * 1 2 3 26 26 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47185 * 60.00226 * 5 3 2 28 28 H 1.08996 * 109.47396 * 300.00291 * 5 3 2 29 29 H 1.08996 * 113.61413 * 25.51562 * 8 6 5 30 30 H 1.09000 * 113.68872 * 254.62578 * 8 6 5 31 31 H 0.97001 * 120.00384 * 23.47613 * 11 9 8 32 32 H 1.08003 * 119.54453 * 180.26588 * 16 15 14 33 33 H 1.09003 * 109.46603 * 125.02392 * 18 17 16 34 34 H 0.96695 * 114.00167 * 60.00498 * 19 18 17 35 35 H 1.48501 * 109.99863 * 58.67899 * 20 18 17 36 36 H 1.48502 * 109.99735 * 179.97438 * 20 18 17 37 37 H 1.07994 * 120.75578 * 179.97438 * 21 17 16 38 38 H 1.07997 * 120.47592 * 180.02562 * 22 21 17 39 39 H 1.08995 * 113.61864 * 139.94177 * 23 9 8 40 40 H 1.08999 * 113.60888 * 270.84219 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 0.0002 7 1 3.4251 3.3532 0.6962 8 6 5.5208 2.9350 0.1224 9 6 5.3806 4.0694 -0.9062 10 1 5.1846 5.0435 -0.4580 11 7 6.4634 4.1045 -1.8924 12 6 6.7491 5.2521 -2.5389 13 8 6.1119 6.2588 -2.3000 14 6 7.8402 5.2862 -3.5407 15 7 8.5362 4.1847 -3.7933 16 6 9.5091 4.1711 -4.6783 17 6 9.8521 5.3177 -5.3765 18 6 10.9734 5.2888 -6.3830 19 8 12.0390 6.1278 -5.9331 20 14 11.5947 3.5425 -6.5704 21 6 9.1543 6.4918 -5.1396 22 6 8.1303 6.4754 -4.2059 23 6 4.1139 3.3557 -1.4072 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9557 0.7811 -0.8909 28 1 3.9564 0.7807 0.8891 29 1 6.0992 2.0854 -0.2406 30 1 5.8414 3.2755 1.1070 31 1 6.9720 3.3009 -2.0831 32 1 10.0507 3.2546 -4.8602 33 1 10.6079 5.6495 -7.3444 34 1 12.4135 5.8652 -5.0812 35 1 10.4880 2.6538 -7.0072 36 1 12.7004 3.5004 -7.5609 37 1 9.4029 7.3987 -5.6707 38 1 7.5654 7.3717 -3.9966 39 1 3.2988 4.0355 -1.6554 40 1 4.3069 2.6214 -2.1893 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17321982_13287726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:25:58 Heat of formation + Delta-G solvation = -87.741412 kcal Electronic energy + Delta-G solvation = -24153.330624 eV Core-core repulsion = 20321.854624 eV Total energy + Delta-G solvation = -3831.476000 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.94629 -41.54812 -40.64965 -39.28207 -37.96579 -37.37222 -34.93501 -33.73266 -32.99515 -31.55834 -28.56036 -27.84759 -26.79237 -25.17507 -24.85948 -23.48243 -22.05040 -21.52721 -20.73358 -19.15830 -18.68375 -18.48657 -17.97056 -17.59468 -17.48386 -16.85704 -16.68664 -16.43117 -16.31120 -15.99536 -15.93858 -15.19432 -15.00145 -14.50958 -14.44764 -14.40418 -14.33077 -13.82237 -13.63908 -13.60429 -13.39752 -12.97431 -12.83900 -12.66672 -12.21828 -12.17589 -11.91841 -11.74848 -11.45063 -11.33758 -11.28950 -11.09783 -10.70294 -10.64266 -10.33955 -9.99983 -5.20403 -0.59371 0.02784 1.07566 1.25672 1.47175 1.62609 1.72940 1.83255 2.04425 2.67764 2.92163 3.23568 3.35912 3.38922 3.40617 3.59265 3.66458 3.73312 3.76646 3.87096 3.89888 4.10279 4.18123 4.21842 4.25181 4.27601 4.31302 4.43547 4.50253 4.60133 4.61399 4.70216 4.72936 4.85108 4.93544 4.96207 5.04714 5.23358 5.32651 5.44298 5.53886 6.31869 6.36350 6.61893 6.78695 7.14860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.503 6.503 5 C -0.102 4.102 6 C -0.099 4.099 7 H 0.108 0.892 8 C -0.138 4.138 9 C 0.121 3.879 10 H 0.119 0.881 11 N -0.700 5.700 12 C 0.573 3.427 13 O -0.528 6.528 14 C 0.081 3.919 15 N -0.453 5.453 16 C 0.104 3.896 17 C -0.151 4.151 18 C -0.067 4.067 19 O -0.536 6.536 20 Si 0.687 3.313 21 C -0.053 4.053 22 C -0.108 4.108 23 C -0.147 4.147 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.412 0.588 32 H 0.164 0.836 33 H 0.120 0.880 34 H 0.381 0.619 35 H -0.253 1.253 36 H -0.249 1.249 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.078 0.922 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.527 -5.022 1.180 6.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.301 3.699 4 O -0.390 6.390 5 C -0.140 4.140 6 C -0.118 4.118 7 H 0.126 0.874 8 C -0.176 4.176 9 C 0.016 3.984 10 H 0.137 0.863 11 N -0.351 5.351 12 C 0.358 3.642 13 O -0.403 6.403 14 C -0.057 4.057 15 N -0.164 5.164 16 C -0.055 4.055 17 C -0.153 4.153 18 C -0.178 4.178 19 O -0.341 6.341 20 Si 0.587 3.413 21 C -0.079 4.079 22 C -0.129 4.129 23 C -0.185 4.185 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.249 0.751 32 H 0.181 0.819 33 H 0.137 0.863 34 H 0.229 0.771 35 H -0.177 1.177 36 H -0.174 1.174 37 H 0.165 0.835 38 H 0.170 0.830 39 H 0.097 0.903 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.579 -5.126 0.738 5.785 hybrid contribution -0.226 0.847 -0.822 1.202 sum 2.352 -4.279 -0.085 4.884 Atomic orbital electron populations 1.23294 0.75984 1.03904 1.02694 1.86508 1.23757 1.33562 1.84102 1.23832 0.92318 0.81379 0.72378 1.90695 1.67233 1.36313 1.44801 1.21405 0.87562 0.98888 1.06137 1.22279 0.96168 0.94150 0.99185 0.87393 1.23413 0.95701 0.98477 1.00016 1.22567 0.86486 1.00035 0.89289 0.86342 1.45812 1.35946 1.12511 1.40800 1.17893 0.82240 0.83699 0.80414 1.90822 1.50906 1.33888 1.64697 1.21193 0.96469 0.90424 0.97643 1.67504 1.05584 1.28268 1.15056 1.22592 0.93929 0.97224 0.91779 1.21656 0.99118 0.95106 0.99431 1.25055 0.87175 1.08029 0.97585 1.86541 1.49525 1.55704 1.42338 0.94833 0.82332 0.74823 0.89264 1.21564 0.92537 0.98435 0.95326 1.22240 0.96823 0.99249 0.94560 1.23596 0.98246 1.00204 0.96492 0.91765 0.91807 0.87942 0.87385 0.87134 0.88923 0.89910 0.75136 0.81903 0.86257 0.77131 1.17718 1.17357 0.83488 0.82957 0.90319 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.45 10.57 -39.27 -0.41 -0.86 16 3 C 0.46 0.65 7.96 36.00 0.29 0.94 16 4 O -0.50 -2.28 15.51 -18.75 -0.29 -2.57 16 5 C -0.10 0.22 5.65 -27.89 -0.16 0.06 16 6 C -0.10 0.14 3.15 -89.72 -0.28 -0.14 16 7 H 0.11 -0.01 7.68 -51.92 -0.40 -0.41 16 8 C -0.14 0.38 7.39 -25.92 -0.19 0.19 16 9 C 0.12 -0.03 4.21 -67.12 -0.28 -0.31 16 10 H 0.12 0.16 7.50 -51.93 -0.39 -0.23 16 11 N -0.70 -0.16 5.35 -53.86 -0.29 -0.45 16 12 C 0.57 1.62 7.81 -12.18 -0.10 1.52 16 13 O -0.53 -3.14 15.94 5.35 0.09 -3.05 16 14 C 0.08 0.13 6.75 -83.01 -0.56 -0.43 16 15 N -0.45 -0.22 9.54 -9.79 -0.09 -0.32 16 16 C 0.10 -0.13 9.84 -17.56 -0.17 -0.30 16 17 C -0.15 0.19 5.37 -104.36 -0.56 -0.37 16 18 C -0.07 0.14 2.82 36.01 0.10 0.24 16 19 O -0.54 0.79 12.84 -35.23 -0.45 0.34 16 20 Si 0.69 -1.95 29.83 -169.99 -5.07 -7.02 16 21 C -0.05 0.03 9.83 -39.31 -0.39 -0.36 16 22 C -0.11 -0.09 9.63 -39.05 -0.38 -0.47 16 23 C -0.15 0.03 7.45 -25.83 -0.19 -0.16 16 24 H 0.06 -0.02 8.13 -51.93 -0.42 -0.45 16 25 H 0.06 -0.02 8.13 -51.93 -0.42 -0.44 16 26 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 27 H 0.11 -0.39 7.86 -51.93 -0.41 -0.80 16 28 H 0.11 -0.43 8.14 -51.93 -0.42 -0.85 16 29 H 0.09 -0.38 8.07 -51.93 -0.42 -0.80 16 30 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 31 H 0.41 -0.60 8.04 -40.82 -0.33 -0.93 16 32 H 0.16 -0.62 4.92 -52.48 -0.26 -0.88 16 33 H 0.12 -0.22 7.96 -51.93 -0.41 -0.63 16 34 H 0.38 -2.01 8.70 45.56 0.40 -1.62 16 35 H -0.25 0.13 7.11 56.52 0.40 0.53 16 36 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 37 H 0.15 -0.28 8.06 -52.49 -0.42 -0.70 16 38 H 0.15 0.09 7.64 -52.49 -0.40 -0.31 16 39 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 40 H 0.09 -0.08 7.91 -51.93 -0.41 -0.49 16 LS Contribution 345.38 15.07 5.20 5.20 Total: 0.00 -9.37 345.38 -8.31 -17.68 By element: Atomic # 1 Polarization: -5.23 SS G_CDS: -5.19 Total: -10.41 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.80 Total: 1.47 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -0.38 Total: -0.76 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -1.07 Total: -6.15 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: -5.07 Total: -7.02 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -9.37 -8.31 -17.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_13287726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.064 kcal (2) G-P(sol) polarization free energy of solvation -9.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds