Wall clock time and date at job start Tue Mar 9 2021 15:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 116.99648 * 2 1 4 4 O 1.20824 * 119.99926 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99901 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47380 * 180.02562 * 5 3 2 7 7 H 1.09008 * 112.84912 * 43.80513 * 6 5 3 8 8 C 1.53781 * 113.61740 * 175.00221 * 6 5 3 9 9 C 1.53779 * 87.08234 * 140.06642 * 8 6 5 10 10 H 1.09000 * 113.61510 * 89.20303 * 9 8 6 11 11 N 1.46498 * 113.61166 * 220.01762 * 9 8 6 12 12 C 1.34777 * 119.99828 * 203.19166 * 11 9 8 13 13 O 1.21513 * 119.99898 * 0.28095 * 12 11 9 14 14 C 1.48173 * 120.00085 * 180.27625 * 12 11 9 15 15 N 1.32715 * 119.72036 * 359.72847 * 14 12 11 16 16 C 1.31525 * 121.63914 * 179.74730 * 15 14 12 17 17 C 1.38563 * 120.90301 * 0.52938 * 16 15 14 18 18 C 1.50703 * 120.31993 * 179.71319 * 17 16 15 19 19 O 1.42894 * 109.46981 * 245.02316 * 18 17 16 20 20 Si 1.86299 * 109.47270 * 5.02676 * 18 17 16 21 21 C 1.38623 * 119.35204 * 359.74161 * 17 16 15 22 22 C 1.38586 * 118.48996 * 359.97438 * 21 17 16 23 23 C 1.53783 * 87.17258 * 334.61120 * 9 8 6 24 24 H 1.08999 * 109.46949 * 299.99345 * 1 2 3 25 25 H 1.08994 * 109.47360 * 59.99739 * 1 2 3 26 26 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47185 * 60.00226 * 5 3 2 28 28 H 1.08996 * 109.47396 * 300.00291 * 5 3 2 29 29 H 1.08996 * 113.61413 * 25.51562 * 8 6 5 30 30 H 1.09000 * 113.68872 * 254.62578 * 8 6 5 31 31 H 0.97001 * 120.00384 * 23.47613 * 11 9 8 32 32 H 1.08003 * 119.54453 * 180.26588 * 16 15 14 33 33 H 1.09003 * 109.46603 * 125.02392 * 18 17 16 34 34 H 0.96695 * 114.00167 * 60.00498 * 19 18 17 35 35 H 1.48501 * 109.99863 * 58.67899 * 20 18 17 36 36 H 1.48502 * 109.99735 * 179.97438 * 20 18 17 37 37 H 1.07994 * 120.75578 * 179.97438 * 21 17 16 38 38 H 1.07997 * 120.47592 * 180.02562 * 22 21 17 39 39 H 1.08995 * 113.61864 * 139.94177 * 23 9 8 40 40 H 1.08999 * 113.60888 * 270.84219 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 0.0002 7 1 3.4251 3.3532 0.6962 8 6 5.5208 2.9350 0.1224 9 6 5.3806 4.0694 -0.9062 10 1 5.1846 5.0435 -0.4580 11 7 6.4634 4.1045 -1.8924 12 6 6.7491 5.2521 -2.5389 13 8 6.1119 6.2588 -2.3000 14 6 7.8402 5.2862 -3.5407 15 7 8.5362 4.1847 -3.7933 16 6 9.5091 4.1711 -4.6783 17 6 9.8521 5.3177 -5.3765 18 6 10.9734 5.2888 -6.3830 19 8 12.0390 6.1278 -5.9331 20 14 11.5947 3.5425 -6.5704 21 6 9.1543 6.4918 -5.1396 22 6 8.1303 6.4754 -4.2059 23 6 4.1139 3.3557 -1.4072 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9557 0.7811 -0.8909 28 1 3.9564 0.7807 0.8891 29 1 6.0992 2.0854 -0.2406 30 1 5.8414 3.2755 1.1070 31 1 6.9720 3.3009 -2.0831 32 1 10.0507 3.2546 -4.8602 33 1 10.6079 5.6495 -7.3444 34 1 12.4135 5.8652 -5.0812 35 1 10.4880 2.6538 -7.0072 36 1 12.7004 3.5004 -7.5609 37 1 9.4029 7.3987 -5.6707 38 1 7.5654 7.3717 -3.9966 39 1 3.2988 4.0355 -1.6554 40 1 4.3069 2.6214 -2.1893 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_13287726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:25:58 Heat of formation + Delta-G solvation = -89.308408 kcal Electronic energy + Delta-G solvation = -24153.398574 eV Core-core repulsion = 20321.854624 eV Total energy + Delta-G solvation = -3831.543950 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.97798 -41.59963 -40.69082 -39.35316 -37.85489 -37.49572 -35.02987 -33.69485 -32.98015 -31.51244 -28.53763 -27.79831 -26.70432 -25.13717 -24.83591 -23.46182 -22.09309 -21.60696 -20.66997 -19.18934 -18.60833 -18.54467 -17.98158 -17.60277 -17.51967 -16.87138 -16.62892 -16.41208 -16.32402 -16.00290 -15.90977 -15.23312 -14.93647 -14.52414 -14.46374 -14.33827 -14.30779 -13.87689 -13.56986 -13.47982 -13.35931 -12.93356 -12.80002 -12.54411 -12.21937 -12.15058 -11.88038 -11.81831 -11.49495 -11.42251 -11.31022 -11.06775 -10.68699 -10.56256 -10.34922 -10.04496 -4.99478 -0.61281 0.06776 1.18513 1.25922 1.51559 1.65819 1.76163 1.99328 1.99754 2.64983 2.94308 3.43203 3.43653 3.48024 3.52379 3.65572 3.76342 3.79195 3.83053 3.90930 3.93872 4.11532 4.25539 4.27491 4.29910 4.40936 4.47885 4.57294 4.63645 4.68955 4.73944 4.76964 4.86035 4.89390 4.97790 5.01271 5.09415 5.23967 5.36874 5.41264 5.56143 6.28066 6.61319 6.72054 6.72577 7.05166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.454 3.546 4 O -0.544 6.544 5 C -0.096 4.096 6 C -0.095 4.095 7 H 0.089 0.911 8 C -0.116 4.116 9 C 0.111 3.889 10 H 0.095 0.905 11 N -0.685 5.685 12 C 0.567 3.433 13 O -0.571 6.571 14 C 0.065 3.935 15 N -0.456 5.456 16 C 0.104 3.896 17 C -0.143 4.143 18 C -0.071 4.071 19 O -0.551 6.551 20 Si 0.778 3.222 21 C -0.054 4.054 22 C -0.119 4.119 23 C -0.148 4.148 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.137 0.863 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.422 0.578 32 H 0.192 0.808 33 H 0.117 0.883 34 H 0.398 0.602 35 H -0.278 1.278 36 H -0.297 1.297 37 H 0.159 0.841 38 H 0.146 0.854 39 H 0.049 0.951 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.128 -6.992 1.268 8.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.299 3.701 4 O -0.434 6.434 5 C -0.133 4.133 6 C -0.114 4.114 7 H 0.107 0.893 8 C -0.153 4.153 9 C 0.007 3.993 10 H 0.113 0.887 11 N -0.336 5.336 12 C 0.352 3.648 13 O -0.450 6.450 14 C -0.073 4.073 15 N -0.167 5.167 16 C -0.056 4.056 17 C -0.145 4.145 18 C -0.181 4.181 19 O -0.359 6.359 20 Si 0.683 3.317 21 C -0.080 4.080 22 C -0.139 4.139 23 C -0.187 4.187 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.146 0.854 27 H 0.149 0.851 28 H 0.155 0.845 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.261 0.739 32 H 0.208 0.792 33 H 0.135 0.865 34 H 0.248 0.752 35 H -0.205 1.205 36 H -0.225 1.225 37 H 0.176 0.824 38 H 0.163 0.837 39 H 0.067 0.933 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.184 -7.128 0.866 8.310 hybrid contribution -0.704 1.455 -0.928 1.863 sum 3.480 -5.673 -0.062 6.656 Atomic orbital electron populations 1.23468 0.75404 1.05441 1.02193 1.86512 1.24519 1.33486 1.83821 1.24604 0.93679 0.80798 0.71007 1.90684 1.68370 1.37541 1.46838 1.21537 0.84925 0.98409 1.08434 1.22168 0.97096 0.94552 0.97613 0.89300 1.23347 0.94675 0.97833 0.99487 1.22603 0.86583 1.00045 0.90096 0.88673 1.45764 1.35594 1.12183 1.40020 1.18187 0.82265 0.83722 0.80596 1.90792 1.52583 1.35402 1.66240 1.21070 0.96881 0.91205 0.98120 1.67502 1.05945 1.27628 1.15622 1.23046 0.93368 0.98227 0.90918 1.21783 0.98862 0.94782 0.99120 1.25203 0.86893 1.08855 0.97187 1.86512 1.49545 1.56191 1.43680 0.93793 0.78268 0.72336 0.87313 1.21725 0.92049 0.99343 0.94885 1.22274 0.97463 0.98986 0.95223 1.23611 0.97211 1.00078 0.97799 0.92229 0.92434 0.85398 0.85060 0.84468 0.86259 0.89091 0.73888 0.79226 0.86523 0.75200 1.20500 1.22508 0.82382 0.83659 0.93250 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.37 -0.83 10.57 -51.46 -0.54 -1.37 16 3 C 0.45 1.41 7.96 71.24 0.57 1.97 16 4 O -0.54 -5.85 15.51 21.97 0.34 -5.51 16 5 C -0.10 0.54 5.65 29.85 0.17 0.71 16 6 C -0.10 0.26 3.15 -10.21 -0.03 0.23 16 7 H 0.09 0.12 7.68 -2.38 -0.02 0.10 16 8 C -0.12 0.77 7.39 31.12 0.23 1.00 16 9 C 0.11 0.05 4.21 45.52 0.19 0.24 16 10 H 0.10 0.51 7.50 -2.39 -0.02 0.49 16 11 N -0.69 -0.67 5.35 -442.60 -2.37 -3.03 16 12 C 0.57 4.12 7.81 86.88 0.68 4.80 16 13 O -0.57 -8.44 15.94 -3.76 -0.06 -8.50 16 14 C 0.06 0.27 6.75 41.91 0.28 0.55 16 15 N -0.46 -0.19 9.54 -184.90 -1.76 -1.96 16 16 C 0.10 -0.39 9.84 84.82 0.83 0.45 16 17 C -0.14 0.50 5.37 -19.69 -0.11 0.39 16 18 C -0.07 0.37 2.82 71.24 0.20 0.57 16 19 O -0.55 2.25 12.84 -148.98 -1.91 0.34 16 20 Si 0.78 -5.34 29.83 68.60 2.05 -3.29 16 21 C -0.05 0.06 9.83 22.44 0.22 0.28 16 22 C -0.12 -0.34 9.63 22.61 0.22 -0.12 16 23 C -0.15 -0.10 7.45 31.18 0.23 0.13 16 24 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 25 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 26 H 0.13 -0.81 8.14 -2.39 -0.02 -0.83 16 27 H 0.13 -1.28 7.86 -2.38 -0.02 -1.30 16 28 H 0.14 -1.43 8.14 -2.39 -0.02 -1.45 16 29 H 0.12 -1.37 8.07 -2.39 -0.02 -1.39 16 30 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 31 H 0.42 -1.54 8.04 -92.71 -0.75 -2.29 16 32 H 0.19 -1.89 4.92 -2.91 -0.01 -1.90 16 33 H 0.12 -0.52 7.96 -2.39 -0.02 -0.54 16 34 H 0.40 -4.81 8.70 -74.06 -0.64 -5.45 16 35 H -0.28 0.66 7.11 99.48 0.71 1.37 16 36 H -0.30 -0.41 7.11 99.48 0.71 0.29 16 37 H 0.16 -0.61 8.06 -2.91 -0.02 -0.64 16 38 H 0.15 0.52 7.64 -2.91 -0.02 0.50 16 39 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.10 -0.19 7.91 -2.39 -0.02 -0.21 16 Total: 0.00 -24.93 345.38 0.36 -24.57 By element: Atomic # 1 Polarization: -13.36 SS G_CDS: -0.26 Total: -13.63 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 4.88 Total: 12.39 kcal Atomic # 7 Polarization: -0.86 SS G_CDS: -4.13 Total: -4.99 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -2.18 Total: -15.05 kcal Atomic # 14 Polarization: -5.34 SS G_CDS: 2.05 Total: -3.29 kcal Total: -24.93 0.36 -24.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_13287726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.739 kcal (2) G-P(sol) polarization free energy of solvation -24.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds