Wall clock time and date at job start Tue Mar 9 2021 15:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34226 * 116.99934 * 2 1 4 4 O 1.20822 * 120.00181 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00054 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47255 * 180.02562 * 5 3 2 7 7 H 1.08993 * 112.90825 * 316.25225 * 6 5 3 8 8 C 1.53962 * 113.66529 * 87.55471 * 6 5 3 9 9 C 1.53782 * 87.11063 * 139.88900 * 8 6 5 10 10 H 1.08996 * 113.68722 * 89.19879 * 9 8 6 11 11 N 1.46499 * 113.61191 * 220.09091 * 9 8 6 12 12 C 1.34783 * 119.99531 * 252.49880 * 11 9 8 13 13 O 1.21278 * 120.00062 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99755 * 180.02562 * 12 11 9 15 15 C 1.53004 * 109.46993 * 179.97438 * 14 12 11 16 16 O 1.42897 * 109.46906 * 180.02562 * 15 14 12 17 17 C 1.35900 * 116.99733 * 180.02562 * 16 15 14 18 18 C 1.38726 * 120.05783 * 359.72226 * 17 16 15 19 19 C 1.38143 * 119.94425 * 179.70018 * 18 17 16 20 20 C 1.38274 * 120.05606 * 0.59653 * 19 18 17 21 21 C 1.50697 * 119.94282 * 179.70250 * 20 19 18 22 22 O 1.42894 * 109.46979 * 119.98330 * 21 20 19 23 23 Si 1.86292 * 109.47520 * 359.97438 * 21 20 19 24 24 C 1.38260 * 120.10934 * 359.67923 * 20 19 18 25 25 C 1.38154 * 120.05857 * 0.02562 * 24 20 19 26 26 C 1.53781 * 87.08260 * 334.63747 * 9 8 6 27 27 H 1.08994 * 109.47404 * 59.99216 * 1 2 3 28 28 H 1.08996 * 109.46640 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46223 * 299.99247 * 1 2 3 30 30 H 1.09002 * 109.47284 * 60.00429 * 5 3 2 31 31 H 1.09004 * 109.47159 * 300.00628 * 5 3 2 32 32 H 1.08997 * 113.53543 * 25.33574 * 8 6 5 33 33 H 1.08998 * 113.73879 * 254.47172 * 8 6 5 34 34 H 0.96997 * 120.00777 * 72.49903 * 11 9 8 35 35 H 1.08994 * 109.47288 * 300.00303 * 14 12 11 36 36 H 1.09007 * 109.46858 * 60.00059 * 14 12 11 37 37 H 1.09001 * 109.47057 * 299.99878 * 15 14 12 38 38 H 1.08993 * 109.47009 * 60.00216 * 15 14 12 39 39 H 1.08001 * 120.02723 * 0.02562 * 18 17 16 40 40 H 1.08004 * 119.97741 * 180.32145 * 19 18 17 41 41 H 1.09009 * 109.46620 * 239.97768 * 21 20 19 42 42 H 0.96704 * 114.00066 * 180.02562 * 22 21 20 43 43 H 1.48500 * 110.00520 * 298.68775 * 23 21 20 44 44 H 1.48503 * 109.99953 * 60.00385 * 23 21 20 45 45 H 1.08001 * 119.97478 * 180.02562 * 24 20 19 46 46 H 1.07995 * 120.02744 * 180.02562 * 25 24 20 47 47 H 1.09002 * 113.61445 * 139.98212 * 26 9 8 48 48 H 1.09002 * 113.61408 * 270.79943 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7421 0.0002 7 1 3.4247 3.3550 -0.6934 8 6 4.1183 3.3508 1.4094 9 6 5.3845 4.0662 0.9096 10 1 5.1895 5.0420 0.4650 11 7 6.4690 4.0958 1.8940 12 6 6.7819 5.2492 2.5173 13 8 6.1660 6.2625 2.2628 14 6 7.8979 5.2800 3.5296 15 6 8.0459 6.6989 4.0825 16 8 9.1045 6.7281 5.0420 17 6 9.3683 7.9230 5.6333 18 6 8.6275 9.0454 5.2928 19 6 8.8935 10.2574 5.8999 20 6 9.9054 10.3551 6.8372 21 6 10.1979 11.6801 7.4929 22 8 10.0225 11.5611 8.9061 23 14 9.0320 12.9725 6.8289 24 6 10.6490 9.2392 7.1741 25 6 10.3828 8.0235 6.5743 26 6 5.5209 2.9349 -0.1231 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 3.9558 0.7810 -0.8909 31 1 3.9565 0.7805 0.8891 32 1 4.3122 2.6127 2.1876 33 1 3.3046 4.0301 1.6636 34 1 6.9619 3.2856 2.0974 35 1 7.6679 4.5941 4.3449 36 1 8.8299 4.9773 3.0522 37 1 8.2762 7.3844 3.2670 38 1 7.1140 7.0019 4.5598 39 1 7.8399 8.9705 4.5576 40 1 8.3137 11.1304 5.6390 41 1 11.2256 11.9729 7.2777 42 1 10.1940 12.3783 9.3939 43 1 9.2268 13.1284 5.3650 44 1 7.6275 12.5850 7.1159 45 1 11.4385 9.3180 7.9068 46 1 10.9636 7.1521 6.8381 47 1 5.8391 3.2783 -1.1075 48 1 6.0995 2.0836 0.2356 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_4549602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:26:56 Heat of formation + Delta-G solvation = -142.068981 kcal Electronic energy + Delta-G solvation = -29070.983354 eV Core-core repulsion = 24672.820014 eV Total energy + Delta-G solvation = -4398.163340 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.77275 -41.48067 -41.02367 -39.63194 -39.07227 -37.53210 -37.25416 -34.91951 -33.47936 -32.23772 -31.78588 -31.29505 -28.46092 -26.79186 -26.71926 -25.85259 -24.44383 -23.45330 -22.21216 -21.80806 -21.58949 -20.50720 -19.62703 -18.62335 -18.37867 -18.02328 -17.88073 -17.61265 -17.54868 -17.30182 -16.94150 -16.77819 -16.24330 -16.06271 -15.88223 -15.55948 -14.96772 -14.94010 -14.79122 -14.51360 -14.47626 -14.25096 -13.99158 -13.85265 -13.70050 -13.50435 -13.38393 -13.07956 -12.96239 -12.88745 -12.78411 -12.51426 -12.18517 -12.05689 -11.97495 -11.90315 -11.84370 -11.81703 -11.51000 -11.36136 -11.05115 -10.32363 -10.19790 -10.11571 -9.32824 -4.99441 0.10045 0.15804 1.15336 1.28667 1.45571 1.59215 1.61672 1.77286 1.94647 2.44429 2.49510 3.36254 3.40930 3.45085 3.49779 3.58089 3.69864 3.73275 3.76453 3.82527 3.87736 3.89624 3.94224 4.09382 4.21005 4.23442 4.25120 4.28039 4.34592 4.42956 4.45264 4.55773 4.60193 4.61839 4.66689 4.69148 4.71966 4.77828 4.80122 4.83324 4.99059 5.04303 5.06560 5.10804 5.23699 5.34852 5.38842 5.55436 5.57450 6.17660 6.44576 6.68959 6.92175 7.13711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.453 3.547 4 O -0.546 6.546 5 C -0.095 4.095 6 C -0.099 4.099 7 H 0.084 0.916 8 C -0.148 4.148 9 C 0.114 3.886 10 H 0.088 0.912 11 N -0.701 5.701 12 C 0.517 3.483 13 O -0.590 6.590 14 C -0.130 4.130 15 C 0.071 3.929 16 O -0.314 6.314 17 C 0.124 3.876 18 C -0.212 4.212 19 C -0.104 4.104 20 C -0.129 4.129 21 C -0.068 4.068 22 O -0.563 6.563 23 Si 0.769 3.231 24 C -0.053 4.053 25 C -0.151 4.151 26 C -0.116 4.116 27 H 0.058 0.942 28 H 0.128 0.872 29 H 0.057 0.943 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.103 0.897 33 H 0.044 0.956 34 H 0.422 0.578 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.133 0.867 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.404 0.596 43 H -0.292 1.292 44 H -0.304 1.304 45 H 0.154 0.846 46 H 0.154 0.846 47 H 0.085 0.915 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.541 -5.195 0.377 7.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.436 6.436 5 C -0.132 4.132 6 C -0.118 4.118 7 H 0.102 0.898 8 C -0.187 4.187 9 C 0.009 3.991 10 H 0.106 0.894 11 N -0.352 5.352 12 C 0.305 3.695 13 O -0.471 6.471 14 C -0.169 4.169 15 C -0.005 4.005 16 O -0.228 6.228 17 C 0.078 3.922 18 C -0.231 4.231 19 C -0.121 4.121 20 C -0.130 4.130 21 C -0.179 4.179 22 O -0.373 6.373 23 Si 0.677 3.323 24 C -0.071 4.071 25 C -0.169 4.169 26 C -0.154 4.154 27 H 0.077 0.923 28 H 0.147 0.853 29 H 0.076 0.924 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.122 0.878 33 H 0.063 0.937 34 H 0.261 0.739 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.151 0.849 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.255 0.745 43 H -0.220 1.220 44 H -0.232 1.232 45 H 0.172 0.828 46 H 0.172 0.828 47 H 0.104 0.896 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.177 -4.830 -0.489 6.404 hybrid contribution -0.816 -0.223 -0.333 0.909 sum 3.362 -5.052 -0.821 6.124 Atomic orbital electron populations 1.23473 0.75380 1.05479 1.02182 1.86511 1.24539 1.33475 1.83801 1.24635 0.93748 0.80784 0.70989 1.90687 1.68420 1.37590 1.46882 1.21541 0.84837 0.98362 1.08481 1.22179 0.97280 0.94550 0.97800 0.89797 1.23618 0.97276 1.00092 0.97689 1.22438 0.86864 0.99534 0.90282 0.89416 1.45801 1.36299 1.11595 1.41536 1.20740 0.83991 0.83267 0.81539 1.90744 1.54964 1.35325 1.66052 1.21440 0.99318 0.96937 0.99238 1.22465 0.88795 0.98637 0.90580 1.85957 1.53039 1.29041 1.54789 1.19144 0.95013 0.84343 0.93668 1.21310 1.03705 0.93077 1.04982 1.20800 0.96957 0.97029 0.97359 1.19655 0.97838 0.96577 0.98902 1.24648 1.08219 0.99195 0.85794 1.86436 1.93095 1.41327 1.16452 0.94627 0.75531 0.83891 0.78259 1.21085 0.98489 0.90336 0.97221 1.20804 0.98498 0.99813 0.97775 1.23352 0.94510 0.98094 0.99423 0.92292 0.85338 0.92401 0.84588 0.84800 0.87819 0.93721 0.73923 0.85234 0.84948 0.91919 0.92285 0.84875 0.86794 0.88325 0.74504 1.21969 1.23237 0.82793 0.82787 0.89625 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.71 10.57 -51.37 -0.54 -1.25 16 3 C 0.45 1.24 7.96 71.24 0.57 1.80 16 4 O -0.55 -5.82 15.51 21.98 0.34 -5.48 16 5 C -0.10 0.61 5.65 29.85 0.17 0.78 16 6 C -0.10 0.35 3.16 -10.20 -0.03 0.32 16 7 H 0.08 0.13 7.68 -2.39 -0.02 0.11 16 8 C -0.15 0.14 7.44 31.18 0.23 0.37 16 9 C 0.11 -0.18 4.24 45.52 0.19 0.01 16 10 H 0.09 0.43 7.46 -2.39 -0.02 0.41 16 11 N -0.70 3.07 5.35 -440.03 -2.36 0.71 16 12 C 0.52 1.01 7.83 87.66 0.69 1.69 16 13 O -0.59 -7.38 15.58 -3.02 -0.05 -7.43 16 14 C -0.13 0.43 6.07 29.85 0.18 0.61 16 15 C 0.07 0.25 4.03 71.98 0.29 0.54 16 16 O -0.31 -1.77 10.14 -92.42 -0.94 -2.70 16 17 C 0.12 0.98 6.69 22.51 0.15 1.13 16 18 C -0.21 -1.96 9.04 22.36 0.20 -1.76 16 19 C -0.10 -0.99 8.66 22.26 0.19 -0.80 16 20 C -0.13 -0.91 5.42 -19.85 -0.11 -1.01 16 21 C -0.07 -0.07 2.81 71.23 0.20 0.13 16 22 O -0.56 -0.36 12.74 -148.98 -1.90 -2.26 16 23 Si 0.77 0.47 29.78 68.60 2.04 2.52 16 24 C -0.05 -0.27 9.60 22.25 0.21 -0.05 16 25 C -0.15 -0.80 9.99 22.37 0.22 -0.57 16 26 C -0.12 0.95 7.39 31.12 0.23 1.18 16 27 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 28 H 0.13 -0.84 8.14 -2.39 -0.02 -0.86 16 29 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 30 H 0.14 -1.50 8.14 -2.39 -0.02 -1.52 16 31 H 0.13 -1.50 7.84 -2.38 -0.02 -1.52 16 32 H 0.10 -0.49 7.90 -2.39 -0.02 -0.51 16 33 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.42 -5.10 8.73 -92.71 -0.81 -5.91 16 35 H 0.13 -0.96 8.14 -2.39 -0.02 -0.98 16 36 H 0.13 -1.05 8.14 -2.38 -0.02 -1.07 16 37 H 0.06 0.33 7.61 -2.39 -0.02 0.32 16 38 H 0.06 0.36 7.63 -2.39 -0.02 0.34 16 39 H 0.13 1.08 6.30 -2.91 -0.02 1.06 16 40 H 0.11 1.05 4.87 -2.91 -0.01 1.04 16 41 H 0.10 -0.38 7.96 -2.38 -0.02 -0.40 16 42 H 0.40 -4.08 8.74 -74.05 -0.65 -4.73 16 43 H -0.29 -1.87 7.11 99.48 0.71 -1.16 16 44 H -0.30 -2.79 7.11 99.48 0.71 -2.09 16 45 H 0.15 0.10 8.06 -2.91 -0.02 0.08 16 46 H 0.15 0.14 8.06 -2.91 -0.02 0.11 16 47 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 48 H 0.12 -1.72 8.08 -2.39 -0.02 -1.74 16 Total: 0.00 -30.81 402.45 0.96 -29.85 By element: Atomic # 1 Polarization: -19.07 SS G_CDS: -0.43 Total: -19.49 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 4.79 Total: 5.54 kcal Atomic # 7 Polarization: 3.07 SS G_CDS: -2.36 Total: 0.71 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -3.08 Total: -19.12 kcal Atomic # 14 Polarization: 0.47 SS G_CDS: 2.04 Total: 2.52 kcal Total: -30.81 0.96 -29.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_4549602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.223 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds