Wall clock time and date at job start Tue Mar 9 2021 15:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00075 * 2 1 4 4 O 1.20832 * 119.99822 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00166 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47175 * 179.97438 * 5 3 2 7 7 H 1.08997 * 112.85202 * 43.79813 * 6 5 3 8 8 C 1.53775 * 113.61566 * 175.00085 * 6 5 3 9 9 C 1.53785 * 87.08337 * 139.98017 * 8 6 5 10 10 H 1.08990 * 113.61421 * 89.19949 * 9 8 6 11 11 N 1.46504 * 113.61175 * 220.01962 * 9 8 6 12 12 C 1.34779 * 119.99702 * 204.99694 * 11 9 8 13 13 O 1.21554 * 119.99870 * 359.97438 * 12 11 9 14 14 C 1.47847 * 119.99692 * 180.02562 * 12 11 9 15 15 C 1.39556 * 120.13957 * 180.21253 * 14 12 11 16 16 C 1.50699 * 120.08007 * 0.02562 * 15 14 12 17 17 O 1.42895 * 109.47514 * 180.27588 * 16 15 14 18 18 C 1.35907 * 116.99907 * 180.02562 * 17 16 15 19 19 C 1.38709 * 120.05068 * 179.97438 * 18 17 16 20 20 C 1.38167 * 119.93928 * 180.02562 * 19 18 17 21 21 C 1.50701 * 119.97062 * 180.02562 * 20 19 18 22 22 O 1.42908 * 109.47035 * 65.00129 * 21 20 19 23 23 Si 1.86305 * 109.47302 * 184.99812 * 21 20 19 24 24 C 1.38242 * 120.05919 * 359.97438 * 20 19 18 25 25 C 1.38293 * 120.11038 * 359.97438 * 24 20 19 26 26 C 1.38119 * 120.05387 * 359.77070 * 25 24 20 27 27 C 1.37979 * 119.85097 * 180.29505 * 15 14 12 28 28 C 1.38338 * 120.14357 * 359.46650 * 27 15 14 29 29 C 1.38386 * 120.29375 * 0.27975 * 28 27 15 30 30 C 1.37934 * 120.14180 * 359.97438 * 29 28 27 31 31 C 1.53784 * 113.61166 * 272.49801 * 6 5 3 32 32 H 1.09000 * 109.47656 * 300.00600 * 1 2 3 33 33 H 1.08997 * 109.46999 * 60.00677 * 1 2 3 34 34 H 1.09006 * 109.47113 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.47289 * 59.99894 * 5 3 2 36 36 H 1.08998 * 109.47010 * 299.99723 * 5 3 2 37 37 H 1.09007 * 113.61355 * 25.42946 * 8 6 5 38 38 H 1.09005 * 113.61590 * 254.52904 * 8 6 5 39 39 H 0.96996 * 120.00043 * 24.99848 * 11 9 8 40 40 H 1.09006 * 109.47203 * 300.27735 * 16 15 14 41 41 H 1.09001 * 109.47206 * 60.27040 * 16 15 14 42 42 H 1.08001 * 120.03280 * 359.97438 * 19 18 17 43 43 H 1.08995 * 109.47592 * 304.99975 * 21 20 19 44 44 H 0.96702 * 113.99735 * 180.02562 * 22 21 20 45 45 H 1.48500 * 109.99809 * 300.00210 * 23 21 20 46 46 H 1.48498 * 109.99613 * 61.31890 * 23 21 20 47 47 H 1.07998 * 119.94852 * 180.02562 * 24 20 19 48 48 H 1.07992 * 119.97219 * 180.02562 * 25 24 20 49 49 H 1.08000 * 120.02921 * 180.27342 * 26 25 24 50 50 H 1.08002 * 119.93210 * 179.75119 * 27 15 14 51 51 H 1.08001 * 119.85534 * 180.25900 * 28 27 15 52 52 H 1.07997 * 119.93235 * 179.97438 * 29 28 27 53 53 H 1.08004 * 120.07146 * 179.97438 * 30 29 28 54 54 H 1.09003 * 113.61595 * 105.46995 * 31 6 5 55 55 H 1.09004 * 113.61650 * 334.56281 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 1 3.4246 3.3540 0.6944 8 6 5.5207 2.9350 0.1231 9 6 5.3817 4.0666 -0.9089 10 1 5.1854 5.0418 -0.4636 11 7 6.4656 4.0988 -1.8940 12 6 6.7761 5.2530 -2.5168 13 8 6.1565 6.2671 -2.2614 14 6 7.8695 5.2854 -3.5114 15 6 8.1965 6.4798 -4.1548 16 6 7.4359 7.7415 -3.8373 17 8 7.9498 8.8182 -4.6237 18 6 7.3698 10.0359 -4.4566 19 6 7.8193 11.1256 -5.1877 20 6 7.2284 12.3626 -5.0155 21 6 7.7158 13.5469 -5.8098 22 8 7.4540 13.3298 -7.1979 23 14 6.8271 15.0831 -5.2432 24 6 6.1897 12.5147 -4.1160 25 6 5.7390 11.4295 -3.3868 26 6 6.3229 10.1897 -3.5590 27 6 9.2140 6.5019 -5.0865 28 6 9.9167 5.3459 -5.3752 29 6 9.6011 4.1593 -4.7369 30 6 8.5827 4.1224 -3.8073 31 6 4.1164 3.3493 -1.4083 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 3.9564 0.7806 -0.8891 36 1 3.9557 0.7810 0.8908 37 1 6.0994 2.0842 -0.2370 38 1 5.8390 3.2784 1.1075 39 1 6.9597 3.2894 -2.0981 40 1 6.3800 7.5965 -4.0656 41 1 7.5497 7.9778 -2.7793 42 1 8.6310 11.0075 -5.8902 43 1 8.7880 13.6703 -5.6573 44 1 7.7426 14.0537 -7.7704 45 1 5.3642 14.9275 -5.4459 46 1 7.1169 15.3376 -3.8091 47 1 5.7288 13.4823 -3.9832 48 1 4.9272 11.5507 -2.6850 49 1 5.9677 9.3416 -2.9925 50 1 9.4654 7.4247 -5.5881 51 1 10.7151 5.3694 -6.1022 52 1 10.1533 3.2601 -4.9671 53 1 8.3370 3.1956 -3.3102 54 1 3.3009 4.0272 -1.6603 55 1 4.3112 2.6119 -2.1871 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_4557126.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:27:28 Heat of formation + Delta-G solvation = -101.485317 kcal Electronic energy + Delta-G solvation = -37916.656257 eV Core-core repulsion = 32851.810576 eV Total energy + Delta-G solvation = -5064.845681 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.181 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.94647 -41.62390 -41.21689 -40.18928 -39.19142 -38.84772 -37.52271 -37.34981 -35.14120 -33.37271 -32.75158 -32.47959 -31.29576 -31.15164 -28.47867 -27.95927 -26.73003 -26.70453 -25.47500 -24.25073 -23.75795 -23.06257 -21.97332 -21.85263 -21.49852 -20.57765 -19.01051 -18.94894 -18.56301 -18.42234 -17.93327 -17.61737 -17.59338 -17.56199 -17.25884 -17.15099 -16.52345 -16.29569 -16.08180 -16.00516 -15.96626 -15.50503 -15.37202 -14.90714 -14.71659 -14.69558 -14.57912 -14.46246 -14.32515 -14.19390 -13.87945 -13.67057 -13.51442 -13.47076 -13.37719 -13.26395 -12.95897 -12.83716 -12.76512 -12.48395 -12.31300 -12.27421 -12.22394 -12.11062 -11.89767 -11.88194 -11.83159 -11.49959 -11.35538 -10.92318 -10.41568 -10.27876 -10.06423 -9.98111 -9.84084 -9.45291 -4.96182 -0.28426 0.01108 0.17148 0.25050 1.16010 1.25951 1.63876 1.72476 1.75003 1.88229 1.97645 2.04959 2.44822 2.71350 3.33556 3.40234 3.45407 3.47719 3.56401 3.66085 3.74053 3.75901 3.78652 3.80375 3.84279 3.88856 4.02089 4.06574 4.10811 4.17062 4.23028 4.24895 4.25428 4.27387 4.34159 4.39735 4.41360 4.45452 4.56165 4.60804 4.66893 4.69505 4.72370 4.78788 4.79070 4.83522 4.89195 4.99028 5.04117 5.06862 5.13864 5.19939 5.21476 5.23103 5.31617 5.39118 5.42649 5.52437 5.55133 5.81543 6.18078 6.42156 6.69583 6.89224 7.07372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.453 3.547 4 O -0.546 6.546 5 C -0.095 4.095 6 C -0.097 4.097 7 H 0.085 0.915 8 C -0.116 4.116 9 C 0.116 3.884 10 H 0.091 0.909 11 N -0.696 5.696 12 C 0.553 3.447 13 O -0.576 6.576 14 C -0.148 4.148 15 C -0.056 4.056 16 C 0.116 3.884 17 O -0.321 6.321 18 C 0.123 3.877 19 C -0.134 4.134 20 C -0.050 4.050 21 C -0.083 4.083 22 O -0.563 6.563 23 Si 0.786 3.214 24 C -0.179 4.179 25 C -0.076 4.076 26 C -0.211 4.211 27 C -0.123 4.123 28 C -0.089 4.089 29 C -0.121 4.121 30 C -0.075 4.075 31 C -0.148 4.148 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.086 0.914 39 H 0.418 0.582 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.142 0.858 43 H 0.098 0.902 44 H 0.405 0.595 45 H -0.297 1.297 46 H -0.288 1.288 47 H 0.124 0.876 48 H 0.147 0.853 49 H 0.136 0.864 50 H 0.132 0.868 51 H 0.153 0.847 52 H 0.165 0.835 53 H 0.164 0.836 54 H 0.045 0.955 55 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.201 -6.687 -0.583 9.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.436 6.436 5 C -0.132 4.132 6 C -0.117 4.117 7 H 0.103 0.897 8 C -0.154 4.154 9 C 0.011 3.989 10 H 0.109 0.891 11 N -0.348 5.348 12 C 0.342 3.658 13 O -0.457 6.457 14 C -0.151 4.151 15 C -0.057 4.057 16 C 0.042 3.958 17 O -0.236 6.236 18 C 0.078 3.922 19 C -0.152 4.152 20 C -0.051 4.051 21 C -0.192 4.192 22 O -0.374 6.374 23 Si 0.692 3.308 24 C -0.196 4.196 25 C -0.094 4.094 26 C -0.229 4.229 27 C -0.141 4.141 28 C -0.107 4.107 29 C -0.139 4.139 30 C -0.093 4.093 31 C -0.186 4.186 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.105 0.895 39 H 0.257 0.743 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.159 0.841 43 H 0.116 0.884 44 H 0.256 0.744 45 H -0.225 1.225 46 H -0.215 1.215 47 H 0.141 0.859 48 H 0.165 0.835 49 H 0.154 0.846 50 H 0.150 0.850 51 H 0.171 0.829 52 H 0.182 0.818 53 H 0.182 0.818 54 H 0.064 0.936 55 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.870 -6.002 0.257 7.734 hybrid contribution -0.760 -0.452 0.320 0.941 sum 4.110 -6.454 0.577 7.673 Atomic orbital electron populations 1.23470 0.75402 1.05469 1.02168 1.86509 1.24514 1.33482 1.83807 1.24639 0.93750 0.80786 0.70996 1.90690 1.68414 1.37584 1.46869 1.21545 0.84835 0.98365 1.08500 1.22140 0.97207 0.94583 0.97732 0.89696 1.23370 0.94591 0.98028 0.99435 1.22493 0.86598 0.99782 0.90052 0.89075 1.45731 1.36358 1.11175 1.41509 1.18585 0.82763 0.83675 0.80783 1.90744 1.54338 1.34826 1.65814 1.19678 0.99748 0.94836 1.00860 1.19695 0.96572 0.92559 0.96843 1.21524 0.96896 0.82928 0.94442 1.85935 1.58634 1.15809 1.63179 1.19151 0.92680 0.85297 0.95058 1.20378 1.03370 0.89983 1.01506 1.19531 0.95040 0.94579 0.95912 1.24930 1.05980 1.02989 0.85292 1.86456 1.85748 1.49603 1.15545 0.94448 0.76590 0.80138 0.79650 1.21005 0.99017 0.99212 1.00389 1.21132 0.98890 0.91346 0.98037 1.21517 0.99288 0.99723 1.02423 1.21121 0.95359 1.00197 0.97410 1.21783 0.98497 0.91991 0.98412 1.21602 0.97284 0.99290 0.95720 1.21609 0.94099 0.96823 0.96771 1.23592 0.97237 1.00097 0.97715 0.92300 0.92427 0.85342 0.84798 0.84545 0.85877 0.89496 0.74331 0.90893 0.90580 0.84053 0.88436 0.74369 1.22500 1.21534 0.85913 0.83496 0.84596 0.84982 0.82926 0.81786 0.81826 0.93632 0.87903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.68 10.57 -51.39 -0.54 -1.22 16 3 C 0.45 1.19 7.96 71.23 0.57 1.76 16 4 O -0.55 -5.77 15.51 21.94 0.34 -5.43 16 5 C -0.10 0.62 5.65 29.85 0.17 0.79 16 6 C -0.10 0.35 3.15 -10.27 -0.03 0.32 16 7 H 0.08 0.11 7.68 -2.39 -0.02 0.09 16 8 C -0.12 0.95 7.39 31.12 0.23 1.18 16 9 C 0.12 -0.14 4.24 45.52 0.19 0.05 16 10 H 0.09 0.43 7.46 -2.39 -0.02 0.42 16 11 N -0.70 1.72 5.31 -442.89 -2.35 -0.63 16 12 C 0.55 2.91 7.75 86.79 0.67 3.59 16 13 O -0.58 -7.49 13.01 -3.89 -0.05 -7.54 16 14 C -0.15 -0.47 5.87 -20.09 -0.12 -0.59 16 15 C -0.06 -0.39 5.91 -19.61 -0.12 -0.50 16 16 C 0.12 1.22 3.38 71.24 0.24 1.46 16 17 O -0.32 -3.78 8.62 -92.50 -0.80 -4.58 16 18 C 0.12 1.54 6.69 22.51 0.15 1.69 16 19 C -0.13 -1.46 9.62 22.37 0.22 -1.25 16 20 C -0.05 -0.49 5.38 -19.88 -0.11 -0.59 16 21 C -0.08 -0.22 2.79 71.24 0.20 -0.02 16 22 O -0.56 -1.50 12.81 -148.98 -1.91 -3.41 16 23 Si 0.79 0.22 29.85 68.60 2.05 2.27 16 24 C -0.18 -1.84 8.67 22.28 0.19 -1.65 16 25 C -0.08 -0.75 10.04 22.25 0.22 -0.53 16 26 C -0.21 -2.45 9.04 22.37 0.20 -2.25 16 27 C -0.12 -0.50 9.37 22.23 0.21 -0.29 16 28 C -0.09 0.16 10.04 22.33 0.22 0.38 16 29 C -0.12 0.62 10.03 22.23 0.22 0.84 16 30 C -0.07 0.32 9.54 22.52 0.21 0.53 16 31 C -0.15 0.11 7.43 31.12 0.23 0.34 16 32 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 33 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 34 H 0.13 -0.84 8.14 -2.38 -0.02 -0.86 16 35 H 0.13 -1.52 7.84 -2.39 -0.02 -1.54 16 36 H 0.14 -1.53 8.14 -2.39 -0.02 -1.55 16 37 H 0.12 -1.73 8.08 -2.38 -0.02 -1.75 16 38 H 0.09 -0.70 8.14 -2.38 -0.02 -0.72 16 39 H 0.42 -4.15 6.76 -92.71 -0.63 -4.78 16 40 H 0.07 0.94 6.82 -2.38 -0.02 0.93 16 41 H 0.08 0.92 6.90 -2.39 -0.02 0.90 16 42 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 43 H 0.10 -0.18 7.96 -2.39 -0.02 -0.20 16 44 H 0.40 -3.52 8.74 -74.06 -0.65 -4.17 16 45 H -0.30 -2.34 7.05 99.48 0.70 -1.64 16 46 H -0.29 -1.63 7.11 99.48 0.71 -0.92 16 47 H 0.12 1.05 4.86 -2.91 -0.01 1.04 16 48 H 0.15 0.76 8.06 -2.91 -0.02 0.73 16 49 H 0.14 1.51 6.30 -2.91 -0.02 1.49 16 50 H 0.13 0.64 7.00 -2.91 -0.02 0.62 16 51 H 0.15 -0.99 8.06 -2.91 -0.02 -1.01 16 52 H 0.16 -1.86 8.06 -2.91 -0.02 -1.88 16 53 H 0.16 -2.00 6.41 -2.91 -0.02 -2.01 16 54 H 0.04 0.27 8.14 -2.39 -0.02 0.25 16 55 H 0.10 -0.45 7.90 -2.38 -0.02 -0.46 16 Total: 0.00 -31.58 452.10 1.63 -29.96 By element: Atomic # 1 Polarization: -15.57 SS G_CDS: -0.29 Total: -15.86 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 5.18 Total: 6.44 kcal Atomic # 7 Polarization: 1.72 SS G_CDS: -2.35 Total: -0.63 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -2.96 Total: -22.17 kcal Atomic # 14 Polarization: 0.22 SS G_CDS: 2.05 Total: 2.27 kcal Total: -31.58 1.63 -29.96 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_4557126.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.530 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds