Wall clock time and date at job start Tue Mar 9 2021 15:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34221 * 117.00339 * 2 1 4 4 O 1.20828 * 119.99998 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00191 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46833 * 180.02562 * 5 3 2 7 7 H 1.08997 * 112.85444 * 43.80538 * 6 5 3 8 8 C 1.53790 * 113.61063 * 175.00012 * 6 5 3 9 9 C 1.53775 * 87.07888 * 140.06494 * 8 6 5 10 10 H 1.09002 * 113.61806 * 89.20037 * 9 8 6 11 11 N 1.46507 * 113.61260 * 220.01859 * 9 8 6 12 12 C 1.34776 * 120.00090 * 203.46776 * 11 9 8 13 13 O 1.21701 * 119.99623 * 0.02562 * 12 11 9 14 14 C 1.46580 * 119.99969 * 179.97438 * 12 11 9 15 15 C 1.36647 * 125.45678 * 180.02562 * 14 12 11 16 16 C 1.37475 * 113.29709 * 180.02562 * 15 14 12 17 17 C 1.50699 * 122.45069 * 179.97438 * 16 15 14 18 18 C 1.33818 * 115.09825 * 359.97438 * 16 15 14 19 19 C 1.50699 * 124.52211 * 180.02562 * 18 16 15 20 20 O 1.42903 * 109.47152 * 330.00290 * 19 18 16 21 21 Si 1.86293 * 109.47431 * 210.00182 * 19 18 16 22 22 S 1.70610 * 110.95730 * 0.26940 * 18 16 15 23 23 C 1.53783 * 87.17418 * 334.60514 * 9 8 6 24 24 H 1.09005 * 109.46915 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47064 * 300.00244 * 1 2 3 26 26 H 1.08996 * 109.47006 * 60.00122 * 1 2 3 27 27 H 1.08997 * 109.47407 * 60.00023 * 5 3 2 28 28 H 1.09004 * 109.47156 * 299.99608 * 5 3 2 29 29 H 1.09001 * 113.61188 * 25.51100 * 8 6 5 30 30 H 1.09001 * 113.68684 * 254.62116 * 8 6 5 31 31 H 0.97000 * 119.99663 * 23.46667 * 11 9 8 32 32 H 1.07999 * 123.35468 * 359.97438 * 15 14 12 33 33 H 1.09000 * 109.46941 * 270.01561 * 17 16 15 34 34 H 1.09004 * 109.47190 * 30.01257 * 17 16 15 35 35 H 1.08998 * 109.47487 * 150.01540 * 17 16 15 36 36 H 1.09008 * 109.47393 * 89.99685 * 19 18 16 37 37 H 0.96700 * 114.00311 * 180.02562 * 20 19 18 38 38 H 1.48501 * 109.99918 * 298.67862 * 21 19 18 39 39 H 1.48506 * 109.99973 * 59.99460 * 21 19 18 40 40 H 1.09006 * 113.60981 * 139.93897 * 23 9 8 41 41 H 1.08996 * 113.61915 * 270.84129 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.4254 3.3530 0.6961 8 6 5.5211 2.9346 0.1225 9 6 5.3809 4.0690 -0.9062 10 1 5.1849 5.0431 -0.4580 11 7 6.4637 4.1041 -1.8924 12 6 6.7531 5.2529 -2.5349 13 8 6.1152 6.2613 -2.2954 14 6 7.8369 5.2881 -3.5212 15 6 8.2242 6.3874 -4.2345 16 6 9.2692 6.1384 -5.0924 17 6 9.8596 7.2048 -5.9785 18 6 9.7237 4.8798 -5.0831 19 6 10.8588 4.3754 -5.9364 20 8 10.9038 5.1178 -7.1566 21 14 10.5955 2.5708 -6.3168 22 16 8.8422 3.9208 -3.9812 23 6 4.1142 3.3553 -1.4073 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9558 0.7808 -0.8908 28 1 3.9565 0.7805 0.8892 29 1 6.0993 2.0849 -0.2405 30 1 5.8415 3.2752 1.1071 31 1 6.9723 3.3004 -2.0829 32 1 7.7555 7.3552 -4.1349 33 1 9.3343 7.2156 -6.9335 34 1 9.7559 8.1767 -5.4958 35 1 10.9156 6.9937 -6.1470 36 1 11.7997 4.5002 -5.4003 37 1 11.6119 4.8460 -7.7565 38 1 10.5787 1.7836 -5.0577 39 1 9.3158 2.3873 -7.0476 40 1 3.2992 4.0353 -1.6555 41 1 4.3071 2.6210 -2.1893 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17321982_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:28:01 Heat of formation + Delta-G solvation = -96.653797 kcal Electronic energy + Delta-G solvation = -24663.723664 eV Core-core repulsion = 20830.901732 eV Total energy + Delta-G solvation = -3832.821932 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.69479 -41.01965 -40.01071 -39.17581 -37.47172 -37.34850 -34.84690 -32.42307 -31.48098 -30.21107 -28.51002 -26.83613 -26.77643 -24.81867 -23.75372 -21.98346 -21.63814 -20.75695 -19.96551 -19.13544 -18.57682 -18.40515 -17.87191 -17.52703 -17.25609 -16.97706 -16.29728 -16.21494 -15.90624 -15.82651 -14.96972 -14.95125 -14.56743 -14.50293 -14.41329 -14.37535 -13.88848 -13.66719 -13.46665 -13.20639 -13.08592 -12.98515 -12.92356 -12.82153 -12.54152 -12.23106 -12.19417 -11.96437 -11.93232 -11.76544 -11.47767 -11.36504 -11.03181 -10.71651 -10.13646 -9.68419 -9.40544 -5.31526 -0.62671 0.27500 0.65719 1.01457 1.23427 1.35687 1.45219 1.70472 1.80586 2.05800 2.18277 3.15797 3.30925 3.34635 3.59366 3.62444 3.68667 3.77519 3.84221 4.11657 4.16681 4.18021 4.23204 4.25211 4.28208 4.39647 4.39965 4.54312 4.59345 4.60027 4.66687 4.71687 4.87565 4.91613 4.93568 5.01970 5.06249 5.17894 5.41056 5.41928 5.48412 5.50478 6.35853 6.43503 6.76553 7.10691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.503 6.503 5 C -0.102 4.102 6 C -0.098 4.098 7 H 0.109 0.891 8 C -0.140 4.140 9 C 0.124 3.876 10 H 0.121 0.879 11 N -0.718 5.718 12 C 0.594 3.406 13 O -0.522 6.522 14 C -0.261 4.261 15 C -0.045 4.045 16 C -0.084 4.084 17 C -0.086 4.086 18 C -0.197 4.197 19 C -0.033 4.033 20 O -0.536 6.536 21 Si 0.670 3.330 22 S 0.180 5.820 23 C -0.147 4.147 24 H 0.102 0.898 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.398 0.602 32 H 0.158 0.842 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.384 0.616 38 H -0.239 1.239 39 H -0.241 1.241 40 H 0.079 0.921 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.912 -6.110 -1.449 8.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.301 3.699 4 O -0.390 6.390 5 C -0.140 4.140 6 C -0.117 4.117 7 H 0.127 0.873 8 C -0.178 4.178 9 C 0.020 3.980 10 H 0.139 0.861 11 N -0.368 5.368 12 C 0.380 3.620 13 O -0.400 6.400 14 C -0.381 4.381 15 C -0.078 4.078 16 C -0.096 4.096 17 C -0.144 4.144 18 C -0.316 4.316 19 C -0.145 4.145 20 O -0.343 6.343 21 Si 0.568 3.432 22 S 0.447 5.553 23 C -0.186 4.186 24 H 0.121 0.879 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.232 0.768 32 H 0.175 0.825 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.232 0.768 38 H -0.163 1.163 39 H -0.165 1.165 40 H 0.098 0.902 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.234 -7.035 -0.433 8.222 hybrid contribution -0.104 1.479 -0.283 1.509 sum 4.131 -5.556 -0.716 6.960 Atomic orbital electron populations 1.23300 0.75937 1.03923 1.02718 1.86502 1.23793 1.33535 1.84092 1.23805 0.92280 0.81404 0.72419 1.90699 1.67222 1.36297 1.44762 1.21403 0.87658 0.98838 1.06102 1.22277 0.96052 0.94198 0.99191 0.87292 1.23431 0.95829 0.98395 1.00114 1.22550 0.86259 1.00143 0.89064 0.86134 1.45854 1.36879 1.11689 1.42415 1.16956 0.81776 0.83550 0.79691 1.90861 1.51047 1.33590 1.64479 1.24617 1.05862 0.99019 1.08583 1.20780 0.94769 0.99269 0.92988 1.18746 0.96902 0.94807 0.99171 1.20528 1.01804 0.94461 0.97627 1.23219 1.05042 0.98039 1.05254 1.23973 0.96681 1.06728 0.87143 1.86575 1.57796 1.61379 1.28564 0.95029 0.87249 0.74956 0.85926 1.82925 1.25852 1.11364 1.35158 1.23606 0.98334 1.00202 0.96464 0.87918 0.91746 0.91789 0.87451 0.87122 0.89110 0.89800 0.76776 0.82464 0.90760 0.92124 0.90067 0.89759 0.76769 1.16276 1.16471 0.90180 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 101.05 1.07 1.06 16 2 O -0.36 -0.51 10.56 -39.23 -0.41 -0.92 16 3 C 0.46 0.75 7.96 36.01 0.29 1.04 16 4 O -0.50 -2.40 15.51 -18.75 -0.29 -2.69 16 5 C -0.10 0.19 5.65 -27.88 -0.16 0.03 16 6 C -0.10 0.11 3.15 -89.71 -0.28 -0.18 16 7 H 0.11 0.02 7.68 -51.93 -0.40 -0.37 16 8 C -0.14 0.33 7.39 -25.92 -0.19 0.14 16 9 C 0.12 0.04 4.21 -67.12 -0.28 -0.24 16 10 H 0.12 0.24 7.50 -51.93 -0.39 -0.15 16 11 N -0.72 -0.64 5.36 -54.35 -0.29 -0.93 16 12 C 0.59 2.39 7.78 -12.90 -0.10 2.29 16 13 O -0.52 -3.94 16.46 5.19 0.09 -3.85 16 14 C -0.26 -0.80 6.45 -36.79 -0.24 -1.03 16 15 C -0.04 -0.14 9.80 -40.43 -0.40 -0.54 16 16 C -0.08 -0.20 5.75 -106.45 -0.61 -0.81 16 17 C -0.09 -0.08 8.70 36.01 0.31 0.23 16 18 C -0.20 -0.31 5.57 -35.86 -0.20 -0.51 16 19 C -0.03 0.04 2.75 36.01 0.10 0.14 16 20 O -0.54 0.89 9.81 -35.23 -0.35 0.54 16 21 Si 0.67 -1.39 31.30 -169.99 -5.32 -6.71 16 22 S 0.18 0.19 19.78 -107.50 -2.13 -1.94 16 23 C -0.15 -0.04 7.45 -25.83 -0.19 -0.23 16 24 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 25 H 0.06 -0.01 8.13 -51.93 -0.42 -0.44 16 26 H 0.06 -0.01 8.13 -51.93 -0.42 -0.43 16 27 H 0.11 -0.36 7.86 -51.93 -0.41 -0.77 16 28 H 0.11 -0.41 8.14 -51.93 -0.42 -0.83 16 29 H 0.09 -0.35 8.07 -51.93 -0.42 -0.77 16 30 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 31 H 0.40 -0.53 7.83 -40.82 -0.32 -0.85 16 32 H 0.16 0.44 8.06 -52.49 -0.42 0.01 16 33 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 34 H 0.06 0.01 8.13 -51.93 -0.42 -0.41 16 35 H 0.08 0.04 6.41 -51.93 -0.33 -0.30 16 36 H 0.08 -0.25 7.96 -51.92 -0.41 -0.66 16 37 H 0.38 -2.51 8.74 45.56 0.40 -2.12 16 38 H -0.24 0.11 7.11 56.52 0.40 0.51 16 39 H -0.24 -0.38 7.11 56.52 0.40 0.02 16 40 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 41 H 0.09 -0.05 7.91 -51.93 -0.41 -0.46 16 LS Contribution 359.28 15.07 5.41 5.41 Total: 0.00 -9.75 359.28 -9.87 -19.62 By element: Atomic # 1 Polarization: -4.23 SS G_CDS: -5.69 Total: -9.92 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -0.89 Total: 1.38 kcal Atomic # 7 Polarization: -0.64 SS G_CDS: -0.29 Total: -0.93 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.97 Total: -6.91 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: -5.32 Total: -6.71 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -2.13 Total: -1.94 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -9.75 -9.87 -19.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.034 kcal (2) G-P(sol) polarization free energy of solvation -9.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds