Wall clock time and date at job start Tue Mar 9 2021 15:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34221 * 117.00339 * 2 1 4 4 O 1.20828 * 119.99998 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00191 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46833 * 180.02562 * 5 3 2 7 7 H 1.08997 * 112.85444 * 43.80538 * 6 5 3 8 8 C 1.53790 * 113.61063 * 175.00012 * 6 5 3 9 9 C 1.53775 * 87.07888 * 140.06494 * 8 6 5 10 10 H 1.09002 * 113.61806 * 89.20037 * 9 8 6 11 11 N 1.46507 * 113.61260 * 220.01859 * 9 8 6 12 12 C 1.34776 * 120.00090 * 203.46776 * 11 9 8 13 13 O 1.21701 * 119.99623 * 0.02562 * 12 11 9 14 14 C 1.46580 * 119.99969 * 179.97438 * 12 11 9 15 15 C 1.36647 * 125.45678 * 180.02562 * 14 12 11 16 16 C 1.37475 * 113.29709 * 180.02562 * 15 14 12 17 17 C 1.50699 * 122.45069 * 179.97438 * 16 15 14 18 18 C 1.33818 * 115.09825 * 359.97438 * 16 15 14 19 19 C 1.50699 * 124.52211 * 180.02562 * 18 16 15 20 20 O 1.42903 * 109.47152 * 330.00290 * 19 18 16 21 21 Si 1.86293 * 109.47431 * 210.00182 * 19 18 16 22 22 S 1.70610 * 110.95730 * 0.26940 * 18 16 15 23 23 C 1.53783 * 87.17418 * 334.60514 * 9 8 6 24 24 H 1.09005 * 109.46915 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47064 * 300.00244 * 1 2 3 26 26 H 1.08996 * 109.47006 * 60.00122 * 1 2 3 27 27 H 1.08997 * 109.47407 * 60.00023 * 5 3 2 28 28 H 1.09004 * 109.47156 * 299.99608 * 5 3 2 29 29 H 1.09001 * 113.61188 * 25.51100 * 8 6 5 30 30 H 1.09001 * 113.68684 * 254.62116 * 8 6 5 31 31 H 0.97000 * 119.99663 * 23.46667 * 11 9 8 32 32 H 1.07999 * 123.35468 * 359.97438 * 15 14 12 33 33 H 1.09000 * 109.46941 * 270.01561 * 17 16 15 34 34 H 1.09004 * 109.47190 * 30.01257 * 17 16 15 35 35 H 1.08998 * 109.47487 * 150.01540 * 17 16 15 36 36 H 1.09008 * 109.47393 * 89.99685 * 19 18 16 37 37 H 0.96700 * 114.00311 * 180.02562 * 20 19 18 38 38 H 1.48501 * 109.99918 * 298.67862 * 21 19 18 39 39 H 1.48506 * 109.99973 * 59.99460 * 21 19 18 40 40 H 1.09006 * 113.60981 * 139.93897 * 23 9 8 41 41 H 1.08996 * 113.61915 * 270.84129 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.4254 3.3530 0.6961 8 6 5.5211 2.9346 0.1225 9 6 5.3809 4.0690 -0.9062 10 1 5.1849 5.0431 -0.4580 11 7 6.4637 4.1041 -1.8924 12 6 6.7531 5.2529 -2.5349 13 8 6.1152 6.2613 -2.2954 14 6 7.8369 5.2881 -3.5212 15 6 8.2242 6.3874 -4.2345 16 6 9.2692 6.1384 -5.0924 17 6 9.8596 7.2048 -5.9785 18 6 9.7237 4.8798 -5.0831 19 6 10.8588 4.3754 -5.9364 20 8 10.9038 5.1178 -7.1566 21 14 10.5955 2.5708 -6.3168 22 16 8.8422 3.9208 -3.9812 23 6 4.1142 3.3553 -1.4073 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9558 0.7808 -0.8908 28 1 3.9565 0.7805 0.8892 29 1 6.0993 2.0849 -0.2405 30 1 5.8415 3.2752 1.1071 31 1 6.9723 3.3004 -2.0829 32 1 7.7555 7.3552 -4.1349 33 1 9.3343 7.2156 -6.9335 34 1 9.7559 8.1767 -5.4958 35 1 10.9156 6.9937 -6.1470 36 1 11.7997 4.5002 -5.4003 37 1 11.6119 4.8460 -7.7565 38 1 10.5787 1.7836 -5.0577 39 1 9.3158 2.3873 -7.0476 40 1 3.2992 4.0353 -1.6555 41 1 4.3071 2.6210 -2.1893 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:28:01 Heat of formation + Delta-G solvation = -96.492562 kcal Electronic energy + Delta-G solvation = -24663.716672 eV Core-core repulsion = 20830.901732 eV Total energy + Delta-G solvation = -3832.814940 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.78704 -41.20402 -40.06612 -39.29248 -37.54580 -37.33727 -35.04874 -32.50615 -31.47942 -30.23755 -28.50674 -26.87003 -26.78024 -24.84040 -23.83155 -22.11303 -21.78133 -20.74687 -20.02553 -19.24830 -18.63197 -18.35378 -17.93749 -17.60359 -17.30234 -17.10382 -16.41161 -16.26361 -15.99668 -15.91911 -15.01696 -14.94737 -14.64056 -14.53767 -14.46361 -14.41151 -13.98087 -13.57704 -13.46099 -13.29801 -13.11712 -12.96597 -12.92876 -12.85749 -12.55989 -12.28699 -12.24532 -11.95784 -11.94070 -11.85139 -11.54222 -11.41458 -11.30065 -10.66354 -10.28613 -9.75814 -9.48173 -5.15861 -0.79426 0.16862 0.52218 1.02552 1.14558 1.30401 1.56924 1.71377 1.91945 1.92907 1.94273 3.29517 3.34592 3.40288 3.57395 3.69291 3.72272 3.74771 3.85513 4.03447 4.20739 4.23971 4.25311 4.25621 4.41446 4.42374 4.53081 4.57355 4.64414 4.66647 4.68233 4.77733 4.79630 4.87664 4.91569 4.93145 5.01762 5.13423 5.31871 5.36368 5.42829 5.47311 6.22681 6.68210 6.88632 6.90102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.454 3.546 4 O -0.544 6.544 5 C -0.096 4.096 6 C -0.094 4.094 7 H 0.090 0.910 8 C -0.117 4.117 9 C 0.113 3.887 10 H 0.096 0.904 11 N -0.702 5.702 12 C 0.589 3.411 13 O -0.571 6.571 14 C -0.283 4.283 15 C -0.057 4.057 16 C -0.103 4.103 17 C -0.081 4.081 18 C -0.205 4.205 19 C -0.042 4.042 20 O -0.551 6.551 21 Si 0.755 3.245 22 S 0.215 5.785 23 C -0.150 4.150 24 H 0.128 0.872 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.411 0.589 32 H 0.149 0.851 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.406 0.594 38 H -0.255 1.255 39 H -0.294 1.294 40 H 0.049 0.951 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.109 -8.454 -1.555 11.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.299 3.701 4 O -0.434 6.434 5 C -0.133 4.133 6 C -0.113 4.113 7 H 0.108 0.892 8 C -0.155 4.155 9 C 0.009 3.991 10 H 0.114 0.886 11 N -0.352 5.352 12 C 0.377 3.623 13 O -0.452 6.452 14 C -0.403 4.403 15 C -0.091 4.091 16 C -0.115 4.115 17 C -0.139 4.139 18 C -0.324 4.324 19 C -0.153 4.153 20 O -0.362 6.362 21 Si 0.658 3.342 22 S 0.483 5.517 23 C -0.188 4.188 24 H 0.147 0.853 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.149 0.851 28 H 0.156 0.844 29 H 0.137 0.863 30 H 0.111 0.889 31 H 0.248 0.752 32 H 0.167 0.833 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.258 0.742 38 H -0.180 1.180 39 H -0.221 1.221 40 H 0.068 0.932 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.478 -9.424 -0.538 11.449 hybrid contribution -0.816 2.153 -0.323 2.325 sum 5.662 -7.271 -0.861 9.256 Atomic orbital electron populations 1.23476 0.75343 1.05478 1.02210 1.86506 1.24562 1.33425 1.83799 1.24572 0.93638 0.80831 0.71043 1.90689 1.68366 1.37542 1.46815 1.21533 0.85043 0.98274 1.08465 1.22160 0.96961 0.94675 0.97507 0.89167 1.23373 0.94870 0.97684 0.99541 1.22618 0.86380 1.00222 0.89921 0.88581 1.45773 1.36591 1.11300 1.41580 1.17210 0.81669 0.83673 0.79798 1.90826 1.52860 1.35314 1.66166 1.24623 1.06441 1.00308 1.08914 1.20883 0.95358 0.99230 0.93606 1.18877 0.97159 0.95724 0.99693 1.20503 1.02082 0.94262 0.97061 1.23751 1.05452 0.97941 1.05211 1.24194 0.96606 1.07078 0.87430 1.86531 1.59216 1.61668 1.28786 0.94030 0.84266 0.72916 0.83025 1.82674 1.24690 1.09848 1.34515 1.23631 0.97199 1.00094 0.97912 0.85341 0.92202 0.92439 0.85079 0.84372 0.86268 0.88897 0.75207 0.83341 0.91308 0.91936 0.89213 0.87208 0.74218 1.18015 1.22080 0.93164 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.37 -0.93 10.56 -51.33 -0.54 -1.48 16 3 C 0.45 1.59 7.96 71.24 0.57 2.15 16 4 O -0.54 -6.11 15.51 21.96 0.34 -5.77 16 5 C -0.10 0.50 5.65 29.85 0.17 0.67 16 6 C -0.09 0.20 3.15 -10.20 -0.03 0.17 16 7 H 0.09 0.18 7.68 -2.39 -0.02 0.16 16 8 C -0.12 0.69 7.39 31.12 0.23 0.92 16 9 C 0.11 0.20 4.21 45.52 0.19 0.39 16 10 H 0.10 0.67 7.50 -2.39 -0.02 0.65 16 11 N -0.70 -1.73 5.36 -444.08 -2.38 -4.11 16 12 C 0.59 5.92 7.78 86.42 0.67 6.60 16 13 O -0.57 -10.52 16.46 -4.35 -0.07 -10.59 16 14 C -0.28 -2.12 6.45 24.08 0.16 -1.97 16 15 C -0.06 -0.47 9.80 21.72 0.21 -0.26 16 16 C -0.10 -0.56 5.75 -21.05 -0.12 -0.68 16 17 C -0.08 -0.19 8.70 71.24 0.62 0.43 16 18 C -0.20 -0.57 5.57 24.68 0.14 -0.43 16 19 C -0.04 0.17 2.75 71.24 0.20 0.37 16 20 O -0.55 2.61 9.81 -148.98 -1.46 1.15 16 21 Si 0.75 -4.17 31.30 68.60 2.15 -2.03 16 22 S 0.22 0.38 19.78 -56.49 -1.12 -0.74 16 23 C -0.15 -0.25 7.45 31.18 0.23 -0.02 16 24 H 0.13 -0.78 8.14 -2.38 -0.02 -0.80 16 25 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 26 H 0.06 0.05 8.13 -2.39 -0.02 0.03 16 27 H 0.13 -1.24 7.86 -2.39 -0.02 -1.26 16 28 H 0.14 -1.41 8.14 -2.38 -0.02 -1.42 16 29 H 0.12 -1.33 8.07 -2.39 -0.02 -1.34 16 30 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H 0.41 -1.38 7.83 -92.71 -0.73 -2.10 16 32 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.06 0.09 8.13 -2.38 -0.02 0.07 16 35 H 0.09 0.03 6.41 -2.39 -0.02 0.01 16 36 H 0.11 -0.95 7.96 -2.38 -0.02 -0.97 16 37 H 0.41 -6.14 8.74 -74.06 -0.65 -6.79 16 38 H -0.25 0.72 7.11 99.48 0.71 1.42 16 39 H -0.29 -1.00 7.11 99.48 0.71 -0.29 16 40 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 41 H 0.10 -0.13 7.91 -2.39 -0.02 -0.14 16 Total: 0.00 -26.68 359.28 1.08 -25.60 By element: Atomic # 1 Polarization: -11.31 SS G_CDS: -0.27 Total: -11.57 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 4.43 Total: 9.54 kcal Atomic # 7 Polarization: -1.73 SS G_CDS: -2.38 Total: -4.11 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -1.73 Total: -16.69 kcal Atomic # 14 Polarization: -4.17 SS G_CDS: 2.15 Total: -2.03 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -1.12 Total: -0.74 kcal Total: -26.68 1.08 -25.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.893 kcal (2) G-P(sol) polarization free energy of solvation -26.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds