Wall clock time and date at job start Tue Mar 9 2021 15:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99314 * 2 1 4 4 O 1.20816 * 120.00385 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99613 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47076 * 179.97438 * 5 3 2 7 7 H 1.09003 * 112.90679 * 43.75230 * 6 5 3 8 8 C 1.53781 * 113.61226 * 175.00172 * 6 5 3 9 9 C 1.53774 * 87.08015 * 139.98282 * 8 6 5 10 10 H 1.08999 * 113.62162 * 89.19839 * 9 8 6 11 11 N 1.46503 * 113.61550 * 220.01835 * 9 8 6 12 12 C 1.34777 * 120.00015 * 205.00216 * 11 9 8 13 13 O 1.21635 * 120.00200 * 359.97438 * 12 11 9 14 14 C 1.47193 * 119.99737 * 179.97438 * 12 11 9 15 15 C 1.36010 * 123.46065 * 0.02562 * 14 12 11 16 16 S 1.70447 * 110.81546 * 179.97438 * 15 14 12 17 17 C 1.75509 * 92.44543 * 359.97438 * 16 15 14 18 18 C 1.50700 * 124.71037 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.47298 * 245.02540 * 18 17 16 20 20 Si 1.86304 * 109.47240 * 5.02650 * 18 17 16 21 21 C 1.32763 * 110.57486 * 0.02562 * 17 16 15 22 22 C 1.53778 * 113.61312 * 272.49663 * 6 5 3 23 23 H 1.09009 * 109.46715 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47476 * 299.99546 * 1 2 3 25 25 H 1.09004 * 109.47522 * 60.00524 * 1 2 3 26 26 H 1.09003 * 109.47036 * 59.99644 * 5 3 2 27 27 H 1.08997 * 109.46927 * 300.00235 * 5 3 2 28 28 H 1.08997 * 113.61599 * 25.43265 * 8 6 5 29 29 H 1.09000 * 113.69156 * 254.54193 * 8 6 5 30 30 H 0.97002 * 119.99642 * 24.99474 * 11 9 8 31 31 H 1.07992 * 124.59455 * 359.97438 * 15 14 12 32 32 H 1.08999 * 109.46950 * 125.02453 * 18 17 16 33 33 H 0.96696 * 114.00475 * 180.02562 * 19 18 17 34 34 H 1.48488 * 110.00146 * 299.99861 * 20 18 17 35 35 H 1.48506 * 109.99784 * 61.31953 * 20 18 17 36 36 H 1.07999 * 123.46104 * 179.97438 * 21 17 16 37 37 H 1.09005 * 113.61254 * 105.47648 * 22 6 5 38 38 H 1.09002 * 113.61667 * 334.57066 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0612 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 6 3.9999 2.7423 -0.0002 7 1 3.4244 3.3552 0.6935 8 6 5.5206 2.9351 0.1231 9 6 5.3815 4.0668 -0.9087 10 1 5.1851 5.0421 -0.4635 11 7 6.4653 4.0991 -1.8940 12 6 6.7758 5.2534 -2.5166 13 8 6.1558 6.2682 -2.2610 14 6 7.8650 5.2860 -3.5061 15 6 8.6026 4.1948 -3.8456 16 16 9.7729 4.5957 -5.0182 17 6 9.2641 6.2749 -5.0607 18 6 9.8824 7.3371 -5.9328 19 8 10.5129 8.3211 -5.1105 20 14 11.1510 6.5593 -7.0539 21 6 8.2597 6.4796 -4.2170 22 6 4.1163 3.3495 -1.4082 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 3.9563 0.7807 -0.8891 27 1 3.9556 0.7811 0.8908 28 1 6.0992 2.0845 -0.2370 29 1 5.8402 3.2783 1.1071 30 1 6.9595 3.2897 -2.0980 31 1 8.4654 3.2081 -3.4287 32 1 9.1065 7.8097 -6.5350 33 1 10.9327 9.0375 -5.6061 34 1 12.2144 5.9114 -6.2450 35 1 10.5021 5.5566 -7.9365 36 1 7.7864 7.4401 -4.0765 37 1 3.3007 4.0274 -1.6601 38 1 4.3110 2.6121 -2.1870 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17321982_6894386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:28:04 Heat of formation + Delta-G solvation = -93.153500 kcal Electronic energy + Delta-G solvation = -22620.554097 eV Core-core repulsion = 18943.421568 eV Total energy + Delta-G solvation = -3677.132529 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.091 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.70343 -41.05973 -39.70159 -38.53308 -37.40419 -37.11187 -34.84334 -32.22901 -31.28531 -28.47746 -26.96916 -26.81464 -26.15002 -23.99854 -22.05175 -21.64190 -20.91759 -20.18981 -18.77796 -18.53386 -18.43118 -18.08380 -17.74073 -17.51590 -16.80246 -16.38821 -16.10310 -15.94974 -15.61030 -14.98243 -14.91726 -14.49693 -14.34284 -14.00608 -13.89438 -13.76921 -13.66539 -13.60124 -13.43231 -12.98542 -12.84757 -12.67773 -12.33951 -12.16693 -12.06274 -11.92743 -11.76515 -11.46503 -11.35699 -10.84993 -10.49362 -10.09148 -9.97471 -9.51672 -5.31680 -0.37931 0.35347 0.70374 0.90619 1.12297 1.23593 1.50574 1.71064 1.81357 2.13927 2.36356 3.25828 3.33120 3.37099 3.61231 3.63982 3.73432 3.83475 3.84769 3.96611 4.16633 4.19986 4.23391 4.25994 4.28506 4.33277 4.40567 4.55322 4.59733 4.68692 4.70189 4.76357 4.92882 5.02301 5.03263 5.21397 5.22327 5.42471 5.53143 6.45962 6.51332 6.76697 7.22571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.503 6.503 5 C -0.102 4.102 6 C -0.099 4.099 7 H 0.108 0.892 8 C -0.140 4.140 9 C 0.124 3.876 10 H 0.120 0.880 11 N -0.716 5.716 12 C 0.580 3.420 13 O -0.529 6.529 14 C -0.154 4.154 15 C -0.203 4.203 16 S 0.175 5.825 17 C -0.197 4.197 18 C -0.035 4.035 19 O -0.542 6.542 20 Si 0.671 3.329 21 C -0.049 4.049 22 C -0.147 4.147 23 H 0.102 0.898 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.399 0.601 31 H 0.172 0.828 32 H 0.085 0.915 33 H 0.385 0.615 34 H -0.234 1.234 35 H -0.239 1.239 36 H 0.158 0.842 37 H 0.078 0.922 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.555 -3.783 -2.823 5.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.301 3.699 4 O -0.390 6.390 5 C -0.140 4.140 6 C -0.118 4.118 7 H 0.127 0.873 8 C -0.178 4.178 9 C 0.020 3.980 10 H 0.138 0.862 11 N -0.367 5.367 12 C 0.366 3.634 13 O -0.406 6.406 14 C -0.173 4.173 15 C -0.341 4.341 16 S 0.441 5.559 17 C -0.314 4.314 18 C -0.148 4.148 19 O -0.349 6.349 20 Si 0.570 3.430 21 C -0.078 4.078 22 C -0.186 4.186 23 H 0.121 0.879 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.125 0.875 27 H 0.128 0.872 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.234 0.766 31 H 0.189 0.811 32 H 0.103 0.897 33 H 0.233 0.767 34 H -0.157 1.157 35 H -0.162 1.162 36 H 0.176 0.824 37 H 0.097 0.903 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.169 -4.722 -3.170 7.052 hybrid contribution -1.614 0.280 1.003 1.920 sum 2.555 -4.443 -2.167 5.564 Atomic orbital electron populations 1.23300 0.75946 1.03921 1.02718 1.86505 1.23792 1.33547 1.84106 1.23813 0.92295 0.81395 0.72421 1.90696 1.67216 1.36304 1.44743 1.21405 0.87631 0.98879 1.06057 1.22251 0.96127 0.94161 0.99237 0.87337 1.23430 0.95733 0.98481 1.00144 1.22513 0.86344 1.00037 0.89135 0.86224 1.45816 1.36961 1.11245 1.42701 1.17614 0.82246 0.83404 0.80164 1.90824 1.52415 1.33326 1.64067 1.20257 1.00662 0.93518 1.02823 1.25788 1.01687 1.03085 1.03534 1.83179 1.33314 1.02483 1.36937 1.23421 1.03281 0.97814 1.06834 1.24001 1.02553 0.91691 0.96545 1.86524 1.74809 1.37717 1.35878 0.94702 0.81367 0.84756 0.82218 1.21050 0.95051 0.98565 0.93146 1.23570 0.98415 1.00184 0.96390 0.87925 0.91755 0.91779 0.87478 0.87173 0.89174 0.89938 0.76626 0.81064 0.89716 0.76689 1.15722 1.16236 0.82402 0.90291 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.55 101.05 1.07 1.05 16 2 O -0.36 -0.47 10.57 -39.26 -0.41 -0.88 16 3 C 0.46 0.69 7.96 36.01 0.29 0.98 16 4 O -0.50 -2.34 15.51 -18.74 -0.29 -2.63 16 5 C -0.10 0.21 5.65 -27.88 -0.16 0.05 16 6 C -0.10 0.12 3.15 -89.81 -0.28 -0.16 16 7 H 0.11 0.02 7.68 -51.93 -0.40 -0.38 16 8 C -0.14 0.36 7.39 -25.92 -0.19 0.17 16 9 C 0.12 0.01 4.24 -67.12 -0.28 -0.28 16 10 H 0.12 0.25 7.46 -51.93 -0.39 -0.14 16 11 N -0.72 -0.07 5.32 -54.17 -0.29 -0.36 16 12 C 0.58 2.09 7.79 -12.62 -0.10 1.99 16 13 O -0.53 -3.99 16.40 5.25 0.09 -3.91 16 14 C -0.15 -0.39 5.98 -104.63 -0.63 -1.02 16 15 C -0.20 -0.02 10.38 29.93 0.31 0.29 16 16 S 0.17 0.16 20.20 -107.50 -2.17 -2.02 16 17 C -0.20 -0.42 5.69 -36.18 -0.21 -0.62 16 18 C -0.03 0.01 2.93 36.01 0.11 0.11 16 19 O -0.54 -0.09 12.86 -35.23 -0.45 -0.54 16 20 Si 0.67 -1.11 30.92 -169.99 -5.26 -6.37 16 21 C -0.05 -0.16 9.95 -39.02 -0.39 -0.55 16 22 C -0.15 0.02 7.43 -25.92 -0.19 -0.18 16 23 H 0.10 -0.29 8.14 -51.92 -0.42 -0.71 16 24 H 0.06 -0.02 8.13 -51.93 -0.42 -0.44 16 25 H 0.06 -0.01 8.13 -51.93 -0.42 -0.44 16 26 H 0.11 -0.39 7.84 -51.93 -0.41 -0.80 16 27 H 0.11 -0.41 8.14 -51.93 -0.42 -0.84 16 28 H 0.09 -0.38 8.08 -51.93 -0.42 -0.80 16 29 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 30 H 0.40 -1.14 7.23 -40.82 -0.29 -1.43 16 31 H 0.17 -0.58 7.01 -52.49 -0.37 -0.94 16 32 H 0.09 -0.16 7.96 -51.93 -0.41 -0.58 16 33 H 0.38 -1.95 8.74 45.56 0.40 -1.55 16 34 H -0.23 -0.25 7.11 56.52 0.40 0.15 16 35 H -0.24 -0.09 7.11 56.52 0.40 0.32 16 36 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 38 H 0.08 -0.09 7.90 -51.93 -0.41 -0.50 16 LS Contribution 341.86 15.07 5.15 5.15 Total: 0.00 -10.39 341.86 -9.15 -19.54 By element: Atomic # 1 Polarization: -4.98 SS G_CDS: -4.86 Total: -9.83 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -0.66 Total: 1.85 kcal Atomic # 7 Polarization: -0.07 SS G_CDS: -0.29 Total: -0.36 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -1.07 Total: -7.96 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: -5.26 Total: -6.37 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.17 Total: -2.02 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -10.39 -9.15 -19.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_6894386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.612 kcal (2) G-P(sol) polarization free energy of solvation -10.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds