Wall clock time and date at job start Tue Mar 9 2021 15:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99314 * 2 1 4 4 O 1.20816 * 120.00385 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99613 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47076 * 179.97438 * 5 3 2 7 7 H 1.09003 * 112.90679 * 43.75230 * 6 5 3 8 8 C 1.53781 * 113.61226 * 175.00172 * 6 5 3 9 9 C 1.53774 * 87.08015 * 139.98282 * 8 6 5 10 10 H 1.08999 * 113.62162 * 89.19839 * 9 8 6 11 11 N 1.46503 * 113.61550 * 220.01835 * 9 8 6 12 12 C 1.34777 * 120.00015 * 205.00216 * 11 9 8 13 13 O 1.21635 * 120.00200 * 359.97438 * 12 11 9 14 14 C 1.47193 * 119.99737 * 179.97438 * 12 11 9 15 15 C 1.36010 * 123.46065 * 0.02562 * 14 12 11 16 16 S 1.70447 * 110.81546 * 179.97438 * 15 14 12 17 17 C 1.75509 * 92.44543 * 359.97438 * 16 15 14 18 18 C 1.50700 * 124.71037 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.47298 * 245.02540 * 18 17 16 20 20 Si 1.86304 * 109.47240 * 5.02650 * 18 17 16 21 21 C 1.32763 * 110.57486 * 0.02562 * 17 16 15 22 22 C 1.53778 * 113.61312 * 272.49663 * 6 5 3 23 23 H 1.09009 * 109.46715 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47476 * 299.99546 * 1 2 3 25 25 H 1.09004 * 109.47522 * 60.00524 * 1 2 3 26 26 H 1.09003 * 109.47036 * 59.99644 * 5 3 2 27 27 H 1.08997 * 109.46927 * 300.00235 * 5 3 2 28 28 H 1.08997 * 113.61599 * 25.43265 * 8 6 5 29 29 H 1.09000 * 113.69156 * 254.54193 * 8 6 5 30 30 H 0.97002 * 119.99642 * 24.99474 * 11 9 8 31 31 H 1.07992 * 124.59455 * 359.97438 * 15 14 12 32 32 H 1.08999 * 109.46950 * 125.02453 * 18 17 16 33 33 H 0.96696 * 114.00475 * 180.02562 * 19 18 17 34 34 H 1.48488 * 110.00146 * 299.99861 * 20 18 17 35 35 H 1.48506 * 109.99784 * 61.31953 * 20 18 17 36 36 H 1.07999 * 123.46104 * 179.97438 * 21 17 16 37 37 H 1.09005 * 113.61254 * 105.47648 * 22 6 5 38 38 H 1.09002 * 113.61667 * 334.57066 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0612 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 6 3.9999 2.7423 -0.0002 7 1 3.4244 3.3552 0.6935 8 6 5.5206 2.9351 0.1231 9 6 5.3815 4.0668 -0.9087 10 1 5.1851 5.0421 -0.4635 11 7 6.4653 4.0991 -1.8940 12 6 6.7758 5.2534 -2.5166 13 8 6.1558 6.2682 -2.2610 14 6 7.8650 5.2860 -3.5061 15 6 8.6026 4.1948 -3.8456 16 16 9.7729 4.5957 -5.0182 17 6 9.2641 6.2749 -5.0607 18 6 9.8824 7.3371 -5.9328 19 8 10.5129 8.3211 -5.1105 20 14 11.1510 6.5593 -7.0539 21 6 8.2597 6.4796 -4.2170 22 6 4.1163 3.3495 -1.4082 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 3.9563 0.7807 -0.8891 27 1 3.9556 0.7811 0.8908 28 1 6.0992 2.0845 -0.2370 29 1 5.8402 3.2783 1.1071 30 1 6.9595 3.2897 -2.0980 31 1 8.4654 3.2081 -3.4287 32 1 9.1065 7.8097 -6.5350 33 1 10.9327 9.0375 -5.6061 34 1 12.2144 5.9114 -6.2450 35 1 10.5021 5.5566 -7.9365 36 1 7.7864 7.4401 -4.0765 37 1 3.3007 4.0274 -1.6601 38 1 4.3110 2.6121 -2.1870 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_6894386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:28:03 Heat of formation + Delta-G solvation = -94.924441 kcal Electronic energy + Delta-G solvation = -22620.630891 eV Core-core repulsion = 18943.421568 eV Total energy + Delta-G solvation = -3677.209322 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.091 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.77499 -41.21272 -39.74936 -38.60657 -37.52445 -37.18845 -34.99271 -32.25549 -31.27658 -28.45542 -27.01369 -26.73421 -26.24212 -24.03341 -22.14165 -21.73556 -20.93531 -20.23749 -18.81471 -18.58114 -18.41760 -18.23273 -17.78482 -17.57752 -16.87583 -16.39978 -16.17332 -16.09001 -15.68872 -15.03957 -14.89606 -14.52534 -14.35335 -14.07103 -13.93597 -13.88258 -13.73187 -13.50843 -13.39432 -12.95293 -12.83253 -12.69051 -12.43320 -12.16823 -12.08974 -11.90033 -11.83424 -11.50823 -11.36708 -11.09950 -10.46400 -10.21784 -10.04001 -9.60794 -5.19212 -0.46053 0.27715 0.61621 0.72768 1.16297 1.19053 1.60189 1.74433 1.88176 2.06782 2.16077 3.32264 3.39721 3.45434 3.68797 3.71713 3.77390 3.83394 3.87960 3.94430 4.16840 4.24071 4.25917 4.28734 4.40635 4.45105 4.60111 4.60670 4.67183 4.70555 4.75782 4.82917 4.89574 4.97511 5.05753 5.06682 5.21074 5.39083 5.53712 6.41088 6.69889 6.83229 7.08324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.454 3.546 4 O -0.545 6.545 5 C -0.095 4.095 6 C -0.096 4.096 7 H 0.086 0.914 8 C -0.116 4.116 9 C 0.113 3.887 10 H 0.090 0.910 11 N -0.697 5.697 12 C 0.576 3.424 13 O -0.584 6.584 14 C -0.179 4.179 15 C -0.180 4.180 16 S 0.187 5.813 17 C -0.211 4.211 18 C -0.052 4.052 19 O -0.564 6.564 20 Si 0.760 3.240 21 C -0.073 4.073 22 C -0.147 4.147 23 H 0.128 0.872 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.134 0.866 27 H 0.137 0.863 28 H 0.122 0.878 29 H 0.087 0.913 30 H 0.417 0.583 31 H 0.210 0.790 32 H 0.099 0.901 33 H 0.405 0.595 34 H -0.269 1.269 35 H -0.263 1.263 36 H 0.140 0.860 37 H 0.046 0.954 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -6.207 -3.176 8.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.299 3.701 4 O -0.435 6.435 5 C -0.132 4.132 6 C -0.115 4.115 7 H 0.104 0.896 8 C -0.154 4.154 9 C 0.009 3.991 10 H 0.108 0.892 11 N -0.348 5.348 12 C 0.363 3.637 13 O -0.465 6.465 14 C -0.197 4.197 15 C -0.318 4.318 16 S 0.453 5.547 17 C -0.328 4.328 18 C -0.163 4.163 19 O -0.375 6.375 20 Si 0.661 3.339 21 C -0.102 4.102 22 C -0.186 4.186 23 H 0.146 0.854 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.151 0.849 27 H 0.155 0.845 28 H 0.141 0.859 29 H 0.106 0.894 30 H 0.255 0.745 31 H 0.227 0.773 32 H 0.116 0.884 33 H 0.257 0.743 34 H -0.195 1.195 35 H -0.188 1.188 36 H 0.158 0.842 37 H 0.065 0.935 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.759 -7.168 -3.519 9.845 hybrid contribution -2.122 1.016 1.100 2.597 sum 3.637 -6.152 -2.419 7.545 Atomic orbital electron populations 1.23473 0.75383 1.05465 1.02195 1.86510 1.24535 1.33456 1.83818 1.24608 0.93701 0.80802 0.71024 1.90687 1.68385 1.37573 1.46821 1.21536 0.84925 0.98279 1.08478 1.22132 0.97074 0.94638 0.97683 0.89551 1.23366 0.94733 0.97899 0.99403 1.22525 0.86678 0.99826 0.90109 0.89222 1.45674 1.36510 1.10943 1.41646 1.17881 0.82079 0.83538 0.80221 1.90792 1.54395 1.35336 1.65957 1.20179 1.01589 0.94238 1.03717 1.26155 0.99746 1.03870 1.02027 1.83169 1.33142 1.01497 1.36909 1.23800 1.02987 0.99249 1.06718 1.24348 1.03815 0.91707 0.96439 1.86469 1.75162 1.38676 1.37191 0.93580 0.78060 0.82714 0.79513 1.21072 0.96047 0.98548 0.94536 1.23592 0.97146 1.00072 0.97785 0.85355 0.92279 0.92395 0.84852 0.84538 0.85941 0.89430 0.74493 0.77271 0.88359 0.74275 1.19487 1.18820 0.84223 0.93482 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.55 113.37 1.20 1.18 16 2 O -0.37 -0.79 10.57 -51.42 -0.54 -1.33 16 3 C 0.45 1.39 7.96 71.24 0.57 1.95 16 4 O -0.54 -5.96 15.51 21.99 0.34 -5.62 16 5 C -0.10 0.56 5.65 29.85 0.17 0.73 16 6 C -0.10 0.26 3.15 -10.27 -0.03 0.23 16 7 H 0.09 0.18 7.68 -2.39 -0.02 0.16 16 8 C -0.12 0.78 7.39 31.12 0.23 1.01 16 9 C 0.11 0.09 4.24 45.51 0.19 0.28 16 10 H 0.09 0.64 7.46 -2.39 -0.02 0.62 16 11 N -0.70 -0.03 5.32 -443.52 -2.36 -2.40 16 12 C 0.58 5.06 7.79 86.60 0.67 5.74 16 13 O -0.58 -10.82 16.40 -4.14 -0.07 -10.89 16 14 C -0.18 -1.07 5.98 -19.87 -0.12 -1.19 16 15 C -0.18 0.17 10.38 67.30 0.70 0.87 16 16 S 0.19 0.22 20.20 -56.49 -1.14 -0.92 16 17 C -0.21 -1.06 5.69 24.51 0.14 -0.92 16 18 C -0.05 0.01 2.93 71.24 0.21 0.22 16 19 O -0.56 -0.48 12.86 -148.98 -1.92 -2.39 16 20 Si 0.76 -2.83 30.92 68.60 2.12 -0.71 16 21 C -0.07 -0.62 9.95 22.67 0.23 -0.40 16 22 C -0.15 -0.07 7.43 31.12 0.23 0.16 16 23 H 0.13 -0.82 8.14 -2.38 -0.02 -0.84 16 24 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 25 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 26 H 0.13 -1.42 7.84 -2.39 -0.02 -1.44 16 27 H 0.14 -1.45 8.14 -2.39 -0.02 -1.47 16 28 H 0.12 -1.56 8.08 -2.39 -0.02 -1.58 16 29 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 30 H 0.42 -3.28 7.23 -92.71 -0.67 -3.95 16 31 H 0.21 -2.08 7.01 -2.91 -0.02 -2.10 16 32 H 0.10 -0.34 7.96 -2.39 -0.02 -0.36 16 33 H 0.41 -4.12 8.74 -74.06 -0.65 -4.77 16 34 H -0.27 -0.57 7.11 99.48 0.71 0.14 16 35 H -0.26 -0.05 7.11 99.48 0.71 0.65 16 36 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 37 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 38 H 0.10 -0.34 7.90 -2.39 -0.02 -0.36 16 Total: 0.00 -29.09 341.86 0.64 -28.45 By element: Atomic # 1 Polarization: -13.87 SS G_CDS: -0.18 Total: -14.04 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 4.38 Total: 9.86 kcal Atomic # 7 Polarization: -0.03 SS G_CDS: -2.36 Total: -2.40 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -2.19 Total: -20.24 kcal Atomic # 14 Polarization: -2.83 SS G_CDS: 2.12 Total: -0.71 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -1.14 Total: -0.92 kcal Total: -29.09 0.64 -28.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_6894386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.476 kcal (2) G-P(sol) polarization free energy of solvation -29.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds