Wall clock time and date at job start Tue Mar 9 2021 15:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99798 * 2 1 4 4 O 1.20824 * 119.99959 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99900 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.46912 * 180.02562 * 5 3 2 7 7 H 1.08992 * 112.85173 * 43.80262 * 6 5 3 8 8 C 1.53787 * 113.61228 * 175.00246 * 6 5 3 9 9 C 1.53776 * 87.07971 * 139.97805 * 8 6 5 10 10 H 1.09004 * 113.61682 * 89.11771 * 9 8 6 11 11 N 1.46507 * 113.61558 * 220.01556 * 9 8 6 12 12 C 1.34766 * 120.00093 * 205.00202 * 11 9 8 13 13 O 1.21626 * 120.00460 * 359.97438 * 12 11 9 14 14 C 1.47265 * 119.99731 * 179.97438 * 12 11 9 15 15 C 1.36775 * 126.93975 * 180.02562 * 14 12 11 16 16 C 1.50698 * 125.80330 * 0.02562 * 15 14 12 17 17 N 1.34664 * 108.39518 * 180.02562 * 15 14 12 18 18 C 1.36451 * 110.29643 * 359.97438 * 17 15 14 19 19 C 1.50696 * 125.57063 * 180.02562 * 18 17 15 20 20 O 1.42894 * 109.47567 * 120.02537 * 19 18 17 21 21 Si 1.86304 * 109.47132 * 0.02742 * 19 18 17 22 22 C 1.34484 * 108.85555 * 359.71624 * 18 17 15 23 23 C 1.53781 * 87.08649 * 334.56685 * 9 8 6 24 24 H 1.09001 * 109.46940 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47391 * 299.99599 * 1 2 3 26 26 H 1.09000 * 109.47246 * 59.99772 * 1 2 3 27 27 H 1.09002 * 109.47152 * 60.00249 * 5 3 2 28 28 H 1.09001 * 109.46980 * 300.00350 * 5 3 2 29 29 H 1.08999 * 113.61008 * 254.52793 * 8 6 5 30 30 H 1.08993 * 113.61117 * 25.42890 * 8 6 5 31 31 H 0.97002 * 119.99477 * 25.00218 * 11 9 8 32 32 H 1.08999 * 109.46865 * 90.00400 * 16 15 14 33 33 H 1.09004 * 109.47167 * 209.99890 * 16 15 14 34 34 H 1.08995 * 109.47426 * 330.00484 * 16 15 14 35 35 H 0.96993 * 124.85129 * 179.97438 * 17 15 14 36 36 H 1.09003 * 109.47491 * 240.03063 * 19 18 17 37 37 H 0.96706 * 114.00232 * 300.00573 * 20 19 18 38 38 H 1.48498 * 110.00102 * 180.02562 * 21 19 18 39 39 H 1.48501 * 109.99941 * 301.31965 * 21 19 18 40 40 H 1.07999 * 126.82988 * 180.26104 * 22 18 17 41 41 H 1.08998 * 113.61029 * 270.89062 * 23 9 8 42 42 H 1.08997 * 113.61702 * 139.98220 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 1 3.4246 3.3533 0.6962 8 6 5.5208 2.9349 0.1245 9 6 5.3817 4.0674 -0.9065 10 1 5.1839 5.0421 -0.4604 11 7 6.4655 4.1005 -1.8917 12 6 6.7759 5.2553 -2.5134 13 8 6.1560 6.2698 -2.2570 14 6 7.8656 5.2886 -3.5033 15 6 8.2980 6.3746 -4.2136 16 6 7.7358 7.7697 -4.1203 17 7 9.3113 5.9853 -5.0104 18 6 9.5619 4.6547 -4.8415 19 6 10.6234 3.8642 -5.5621 20 8 11.5333 3.3099 -4.6099 21 14 11.5498 4.9855 -6.7263 22 6 8.7111 4.1655 -3.9220 23 6 4.1163 3.3506 -1.4065 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 3.9564 0.7806 -0.8892 28 1 3.9557 0.7809 0.8908 29 1 5.8390 3.2774 1.1091 30 1 6.0993 2.0846 -0.2364 31 1 6.9596 3.2913 -2.0965 32 1 8.2718 8.3267 -3.3518 33 1 7.8509 8.2728 -5.0805 34 1 6.6783 7.7188 -3.8612 35 1 9.7941 6.5675 -5.6176 36 1 10.1553 3.0591 -6.1286 37 1 11.9873 3.9705 -4.0689 38 1 12.5992 4.2177 -7.4435 39 1 10.6095 5.5931 -7.7020 40 1 8.6586 3.1475 -3.5653 41 1 4.3111 2.6139 -2.1858 42 1 3.3008 4.0287 -1.6578 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_9865296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:28:16 Heat of formation + Delta-G solvation = -89.087779 kcal Electronic energy + Delta-G solvation = -25024.092567 eV Core-core repulsion = 21165.246706 eV Total energy + Delta-G solvation = -3858.845862 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.47837 -41.66426 -40.69458 -39.15954 -37.70844 -37.48213 -34.77407 -32.78650 -32.31886 -31.26141 -28.92129 -28.39146 -26.66541 -25.96749 -24.58552 -23.02808 -21.78114 -21.34306 -21.12948 -20.10426 -18.66297 -18.57204 -17.85929 -17.69574 -17.55480 -16.92944 -16.84243 -16.51607 -16.09720 -15.81174 -15.38731 -15.07399 -14.71880 -14.68012 -14.49588 -14.45222 -14.05770 -13.85851 -13.83805 -13.44208 -13.36105 -13.31661 -12.91523 -12.77790 -12.64835 -12.54341 -12.24168 -12.09000 -11.85503 -11.80855 -11.45124 -11.30056 -10.90479 -10.47729 -10.08996 -9.77802 -9.14138 -5.13287 0.70166 1.14104 1.18373 1.28430 1.50634 1.77276 1.85217 2.05493 2.46910 2.52666 3.44868 3.47028 3.52191 3.72237 3.79333 3.86946 3.89055 3.92317 4.09376 4.23662 4.26049 4.27731 4.34754 4.46813 4.48782 4.51824 4.64364 4.68921 4.72012 4.76590 4.78043 4.84293 4.88165 5.03692 5.06113 5.12135 5.23013 5.35993 5.43704 5.66449 5.71111 5.87302 6.42934 6.69483 6.72066 6.73879 7.37864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.454 3.546 4 O -0.544 6.544 5 C -0.096 4.096 6 C -0.096 4.096 7 H 0.087 0.913 8 C -0.118 4.118 9 C 0.118 3.882 10 H 0.091 0.909 11 N -0.704 5.704 12 C 0.585 3.415 13 O -0.590 6.590 14 C -0.265 4.265 15 C 0.116 3.884 16 C -0.097 4.097 17 N -0.534 5.534 18 C -0.024 4.024 19 C -0.036 4.036 20 O -0.547 6.547 21 Si 0.762 3.238 22 C -0.136 4.136 23 C -0.148 4.148 24 H 0.128 0.872 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.131 0.869 28 H 0.136 0.864 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.413 0.587 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.426 0.574 36 H 0.123 0.877 37 H 0.397 0.603 38 H -0.290 1.290 39 H -0.278 1.278 40 H 0.160 0.840 41 H 0.097 0.903 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.774 -2.983 -0.412 6.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.299 3.701 4 O -0.434 6.434 5 C -0.133 4.133 6 C -0.115 4.115 7 H 0.105 0.895 8 C -0.156 4.156 9 C 0.013 3.987 10 H 0.109 0.891 11 N -0.354 5.354 12 C 0.375 3.625 13 O -0.473 6.473 14 C -0.275 4.275 15 C -0.003 4.003 16 C -0.154 4.154 17 N -0.135 5.135 18 C -0.133 4.133 19 C -0.147 4.147 20 O -0.354 6.354 21 Si 0.667 3.333 22 C -0.160 4.160 23 C -0.187 4.187 24 H 0.146 0.854 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.149 0.851 28 H 0.154 0.846 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.250 0.750 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.267 0.733 36 H 0.140 0.860 37 H 0.247 0.753 38 H -0.217 1.217 39 H -0.205 1.205 40 H 0.177 0.823 41 H 0.116 0.884 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.240 -2.351 -1.408 5.913 hybrid contribution -0.768 -0.271 -0.357 0.889 sum 4.472 -2.622 -1.766 5.476 Atomic orbital electron populations 1.23471 0.75388 1.05446 1.02206 1.86511 1.24539 1.33475 1.83826 1.24594 0.93658 0.80803 0.71013 1.90683 1.68356 1.37542 1.46823 1.21541 0.84957 0.98473 1.08330 1.22140 0.97122 0.94468 0.97755 0.89472 1.23351 0.94584 0.98082 0.99534 1.22411 0.86717 0.99494 0.90111 0.89135 1.45637 1.36460 1.11390 1.41908 1.17707 0.81832 0.83063 0.79855 1.90727 1.55064 1.35084 1.66414 1.20207 1.04421 0.95459 1.07411 1.20552 0.90313 0.96763 0.92703 1.20605 1.02182 0.88846 1.03772 1.41679 1.28294 1.09057 1.34467 1.20713 1.03785 0.84051 1.04726 1.24542 0.91012 1.02114 0.97037 1.86511 1.57571 1.38120 1.53231 0.94310 0.78373 0.82031 0.78602 1.21958 0.96050 0.98535 0.99427 1.23576 0.97476 1.00051 0.97565 0.85382 0.92225 0.92417 0.85112 0.84597 0.89471 0.86449 0.74962 0.89416 0.89293 0.90357 0.73286 0.85981 0.75323 1.21715 1.20507 0.82289 0.88428 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.19 16 2 O -0.37 -1.09 10.57 -51.38 -0.54 -1.63 16 3 C 0.45 1.80 7.96 71.24 0.57 2.37 16 4 O -0.54 -6.31 15.51 21.97 0.34 -5.97 16 5 C -0.10 0.43 5.65 29.85 0.17 0.60 16 6 C -0.10 0.14 3.15 -10.26 -0.03 0.11 16 7 H 0.09 0.25 7.68 -2.39 -0.02 0.23 16 8 C -0.12 0.61 7.39 31.12 0.23 0.84 16 9 C 0.12 0.22 4.24 45.51 0.19 0.41 16 10 H 0.09 0.68 7.47 -2.38 -0.02 0.66 16 11 N -0.70 -1.22 5.35 -443.45 -2.37 -3.59 16 12 C 0.58 4.91 7.81 86.62 0.68 5.59 16 13 O -0.59 -9.33 14.41 -4.11 -0.06 -9.39 16 14 C -0.27 -1.25 6.29 -19.04 -0.12 -1.37 16 15 C 0.12 0.25 7.17 41.78 0.30 0.55 16 16 C -0.10 -0.07 9.88 71.24 0.70 0.63 16 17 N -0.53 1.69 5.41 -171.07 -0.93 0.76 16 18 C -0.02 0.06 6.11 40.98 0.25 0.31 16 19 C -0.04 0.17 2.98 71.23 0.21 0.38 16 20 O -0.55 2.14 12.86 -148.98 -1.92 0.23 16 21 Si 0.76 -4.91 30.94 68.60 2.12 -2.78 16 22 C -0.14 -0.02 10.43 23.62 0.25 0.22 16 23 C -0.15 -0.28 7.43 31.12 0.23 -0.05 16 24 H 0.13 -0.74 8.14 -2.39 -0.02 -0.76 16 25 H 0.06 0.05 8.13 -2.39 -0.02 0.03 16 26 H 0.06 0.06 8.13 -2.39 -0.02 0.04 16 27 H 0.13 -1.14 7.84 -2.39 -0.02 -1.16 16 28 H 0.14 -1.26 8.14 -2.39 -0.02 -1.28 16 29 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 30 H 0.12 -1.20 8.08 -2.39 -0.02 -1.22 16 31 H 0.41 -1.67 7.85 -92.71 -0.73 -2.40 16 32 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 34 H 0.08 0.52 6.46 -2.39 -0.02 0.51 16 35 H 0.43 -3.69 6.70 -92.71 -0.62 -4.31 16 36 H 0.12 -0.49 7.96 -2.39 -0.02 -0.51 16 37 H 0.40 -4.50 8.70 -74.05 -0.64 -5.14 16 38 H -0.29 -0.45 7.11 99.48 0.71 0.26 16 39 H -0.28 0.56 7.11 99.48 0.71 1.27 16 40 H 0.16 -0.54 7.70 -2.91 -0.02 -0.56 16 41 H 0.10 -0.09 7.90 -2.39 -0.02 -0.11 16 42 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 Total: 0.00 -26.29 355.76 0.59 -25.71 By element: Atomic # 1 Polarization: -14.22 SS G_CDS: -0.88 Total: -15.10 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 4.82 Total: 11.78 kcal Atomic # 7 Polarization: 0.46 SS G_CDS: -3.30 Total: -2.83 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -2.18 Total: -16.77 kcal Atomic # 14 Polarization: -4.91 SS G_CDS: 2.12 Total: -2.78 kcal Total: -26.29 0.59 -25.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_9865296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.380 kcal (2) G-P(sol) polarization free energy of solvation -26.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds