Wall clock time and date at job start Tue Mar 9 2021 13:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33811 * 122.44798 * 2 1 4 4 C 1.50696 * 124.52291 * 0.02562 * 3 2 1 5 5 O 1.42906 * 109.47169 * 29.99838 * 4 3 2 6 6 Si 1.86301 * 109.47422 * 149.99502 * 4 3 2 7 7 H 1.48502 * 109.47092 * 59.99868 * 6 4 3 8 8 H 1.48497 * 109.47446 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47132 * 300.00153 * 6 4 3 10 10 S 1.70616 * 110.95779 * 179.74042 * 3 2 1 11 11 C 1.75832 * 91.56504 * 0.31060 * 10 3 2 12 12 C 1.46554 * 125.46210 * 179.97438 * 11 10 3 13 13 O 1.21720 * 120.00380 * 179.69311 * 12 11 10 14 14 N 1.34779 * 119.99978 * 359.68865 * 12 11 10 15 15 C 1.40043 * 120.00100 * 184.27366 * 14 12 11 16 16 C 1.38696 * 120.09139 * 325.64302 * 15 14 12 17 17 C 1.38243 * 119.98247 * 179.97438 * 16 15 14 18 18 C 1.38238 * 120.16403 * 359.97438 * 17 16 15 19 19 C 1.38299 * 120.18313 * 359.97438 * 18 17 16 20 20 C 1.38499 * 120.01430 * 0.02562 * 19 18 17 21 21 O 1.35986 * 120.07925 * 179.97438 * 20 19 18 22 22 Si 1.63097 * 113.99976 * 90.00359 * 21 20 19 23 23 C 1.86299 * 109.46945 * 299.99737 * 22 21 20 24 24 C 1.86302 * 109.47417 * 59.99512 * 22 21 20 25 25 C 1.86295 * 109.47262 * 179.97438 * 22 21 20 26 26 C 1.53003 * 109.47060 * 59.99682 * 25 22 21 27 27 C 1.52999 * 109.47493 * 179.97438 * 25 22 21 28 28 C 1.52998 * 109.47238 * 300.00098 * 25 22 21 29 29 C 1.36669 * 109.08012 * 359.69384 * 11 10 3 30 30 H 1.08991 * 109.47078 * 269.99796 * 1 2 3 31 31 H 1.09005 * 109.46736 * 29.99818 * 1 2 3 32 32 H 1.09002 * 109.47050 * 149.98867 * 1 2 3 33 33 H 1.09000 * 109.47788 * 269.99548 * 4 3 2 34 34 H 0.96698 * 114.00168 * 59.99698 * 5 4 3 35 35 H 0.97000 * 119.99857 * 4.27546 * 14 12 11 36 36 H 1.07996 * 120.00783 * 359.97366 * 16 15 14 37 37 H 1.07994 * 119.91790 * 180.02562 * 17 16 15 38 38 H 1.07997 * 119.90949 * 179.97438 * 18 17 16 39 39 H 1.07990 * 119.99163 * 179.74337 * 19 18 17 40 40 H 1.09004 * 109.47196 * 60.00257 * 23 22 21 41 41 H 1.08999 * 109.47565 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.47337 * 300.00428 * 23 22 21 43 43 H 1.09003 * 109.46728 * 60.00298 * 24 22 21 44 44 H 1.08998 * 109.47480 * 180.02562 * 24 22 21 45 45 H 1.09003 * 109.47068 * 300.00595 * 24 22 21 46 46 H 1.09003 * 109.46861 * 60.00006 * 26 25 22 47 47 H 1.09003 * 109.47010 * 179.97438 * 26 25 22 48 48 H 1.09003 * 109.47172 * 300.00470 * 26 25 22 49 49 H 1.09005 * 109.46604 * 60.00082 * 27 25 22 50 50 H 1.08993 * 109.47680 * 180.02562 * 27 25 22 51 51 H 1.08995 * 109.47416 * 300.00796 * 27 25 22 52 52 H 1.08993 * 109.46889 * 59.99336 * 28 25 22 53 53 H 1.09003 * 109.47063 * 180.02562 * 28 25 22 54 54 H 1.09005 * 109.46853 * 299.99915 * 28 25 22 55 55 H 1.07993 * 123.35579 * 180.26355 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5161 0.0006 5 8 0.3755 2.4978 0.6747 6 14 2.7926 3.6825 0.8787 7 1 4.1020 3.7015 0.1783 8 1 2.2114 5.0490 0.8798 9 1 2.9867 3.2266 2.2786 10 16 3.8969 0.7893 0.0072 11 6 3.5939 -0.9426 0.0007 12 6 4.6232 -1.9859 0.0022 13 8 4.3003 -3.1595 0.0030 14 7 5.9274 -1.6459 0.0027 15 6 6.9101 -2.6396 -0.0862 16 6 6.7049 -3.8757 0.5083 17 6 7.6764 -4.8552 0.4186 18 6 8.8530 -4.6063 -0.2630 19 6 9.0643 -3.3765 -0.8593 20 6 8.0961 -2.3898 -0.7741 21 8 8.3027 -1.1798 -1.3595 22 14 7.7812 -1.0916 -2.9023 23 6 8.6742 -2.3607 -3.9332 24 6 5.9489 -1.4239 -2.9585 25 6 8.1240 0.6105 -3.5774 26 6 9.6287 0.8839 -3.5311 27 6 7.6354 0.6932 -5.0249 28 6 7.3902 1.6524 -2.7306 29 6 2.2446 -1.1601 0.0004 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3633 -0.8899 -0.5140 33 1 1.4930 2.8508 -1.0269 34 1 0.4266 2.2091 1.5961 35 1 6.1853 -0.7128 0.0647 36 1 5.7865 -4.0730 1.0411 37 1 7.5153 -5.8175 0.8816 38 1 9.6093 -5.3743 -0.3302 39 1 9.9863 -3.1839 -1.3875 40 1 8.4732 -3.3565 -3.5381 41 1 8.3261 -2.3015 -4.9644 42 1 9.7463 -2.1664 -3.9003 43 1 5.4264 -0.6813 -2.3554 44 1 5.6004 -1.3654 -3.9896 45 1 5.7479 -2.4197 -2.5633 46 1 10.1515 0.1417 -4.1344 47 1 9.8294 1.8797 -3.9266 48 1 9.9772 0.8249 -2.5000 49 1 6.5634 0.4982 -5.0581 50 1 7.8364 1.6889 -5.4200 51 1 8.1584 -0.0490 -5.6279 52 1 7.7387 1.5933 -1.6996 53 1 7.5905 2.6483 -3.1259 54 1 6.3182 1.4576 -2.7635 55 1 1.8019 -2.1452 0.0010 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17509620_6739946.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:31 Heat of formation + Delta-G solvation = -88.350875 kcal Electronic energy + Delta-G solvation = -36096.406601 eV Core-core repulsion = 31734.892662 eV Total energy + Delta-G solvation = -4361.513939 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 407.155 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.03791 -40.46839 -39.73942 -37.68902 -37.32540 -36.90059 -36.00878 -32.52022 -31.19396 -30.30282 -30.16007 -29.38614 -29.14580 -27.88894 -27.44197 -26.64524 -24.83396 -23.90982 -23.17654 -21.77058 -20.60214 -20.32461 -19.67166 -19.07540 -18.44393 -17.55388 -17.45937 -17.05939 -16.60262 -16.48135 -16.24153 -16.18788 -15.89079 -15.68652 -15.39782 -14.95758 -14.90926 -14.79837 -14.72935 -14.53822 -14.12380 -14.08935 -13.94125 -13.58998 -13.52834 -13.49339 -13.32699 -13.32067 -13.15241 -13.01076 -12.96562 -12.94203 -12.75367 -12.51921 -12.47704 -12.38913 -12.29650 -12.19247 -12.09197 -11.80221 -11.70517 -11.67006 -11.59395 -11.17743 -10.69645 -10.61532 -10.17525 -9.81628 -9.69631 -9.50414 -9.12367 -0.81023 0.10015 0.15927 0.26936 0.59939 0.97786 1.22186 1.23914 1.36629 1.42837 1.60619 1.73186 1.85526 1.86854 1.94016 2.29728 2.75688 3.33183 3.45773 3.63219 3.77776 4.04170 4.05040 4.07624 4.10751 4.12843 4.23079 4.38353 4.43160 4.43780 4.51517 4.52068 4.57779 4.58177 4.60893 4.69331 4.69613 4.74669 4.81094 4.82144 4.90906 4.97723 4.98802 5.06930 5.07813 5.14008 5.16374 5.19644 5.30503 5.31523 5.35395 5.37152 5.40763 5.47500 5.48121 5.49401 5.53331 5.55261 6.03762 6.09447 6.58487 6.77604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.099 4.099 3 C -0.227 4.227 4 C -0.035 4.035 5 O -0.534 6.534 6 Si 0.918 3.082 7 H -0.229 1.229 8 H -0.240 1.240 9 H -0.247 1.247 10 S 0.209 5.791 11 C -0.286 4.286 12 C 0.595 3.405 13 O -0.541 6.541 14 N -0.656 5.656 15 C 0.095 3.905 16 C -0.117 4.117 17 C -0.122 4.122 18 C -0.105 4.105 19 C -0.144 4.144 20 C 0.099 3.901 21 O -0.562 6.562 22 Si 1.290 2.710 23 C -0.510 4.510 24 C -0.511 4.511 25 C -0.365 4.365 26 C -0.140 4.140 27 C -0.143 4.143 28 C -0.144 4.144 29 C -0.044 4.044 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.142 0.858 34 H 0.390 0.610 35 H 0.417 0.583 36 H 0.131 0.869 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.061 0.939 50 H 0.060 0.940 51 H 0.063 0.937 52 H 0.060 0.940 53 H 0.059 0.941 54 H 0.061 0.939 55 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 3.250 -0.408 3.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.347 4.347 4 C -0.148 4.148 5 O -0.342 6.342 6 Si 0.738 3.262 7 H -0.152 1.152 8 H -0.163 1.163 9 H -0.170 1.170 10 S 0.478 5.522 11 C -0.406 4.406 12 C 0.384 3.616 13 O -0.420 6.420 14 N -0.302 5.302 15 C 0.001 3.999 16 C -0.137 4.137 17 C -0.141 4.141 18 C -0.124 4.124 19 C -0.163 4.163 20 C 0.053 3.947 21 O -0.515 6.515 22 Si 1.424 2.576 23 C -0.613 4.613 24 C -0.612 4.612 25 C -0.411 4.411 26 C -0.197 4.197 27 C -0.200 4.200 28 C -0.201 4.201 29 C -0.078 4.078 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.159 0.841 34 H 0.240 0.760 35 H 0.255 0.745 36 H 0.149 0.851 37 H 0.165 0.835 38 H 0.175 0.825 39 H 0.171 0.829 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.082 0.918 52 H 0.079 0.921 53 H 0.078 0.922 54 H 0.080 0.920 55 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.697 4.333 -0.336 5.115 hybrid contribution -1.546 -1.151 -0.015 1.928 sum 1.151 3.182 -0.351 3.402 Atomic orbital electron populations 1.20653 0.87395 1.03470 1.03545 1.18794 0.99216 0.89985 1.03111 1.24772 0.98071 1.01792 1.10051 1.24452 0.92326 0.93676 1.04330 1.86528 1.27498 1.89970 1.30155 0.86027 0.78741 0.80402 0.81022 1.15209 1.16317 1.17049 1.82950 1.03684 0.96696 1.68914 1.24329 0.97620 0.97646 1.20987 1.17175 0.81595 0.87600 0.75197 1.90821 1.81789 1.19266 1.50091 1.43144 1.04222 1.10284 1.72504 1.17962 0.89170 0.90985 1.01780 1.21294 1.00594 0.92572 0.99253 1.21372 0.93291 0.99756 0.99677 1.21413 0.97774 0.96855 0.96310 1.21428 0.99787 0.92577 1.02472 1.17937 0.93691 0.85175 0.97883 1.83806 1.84098 1.32747 1.50882 0.76895 0.62728 0.66069 0.51888 1.27004 1.09729 1.13275 1.11311 1.27229 1.24908 1.04013 1.05055 1.25642 0.99319 1.14953 1.01141 1.21588 0.93791 1.02238 1.02101 1.21618 1.01312 1.02764 0.94280 1.21636 1.00158 0.98791 0.99563 1.20871 0.90805 1.00718 0.95401 0.89935 0.89498 0.91899 0.84099 0.76010 0.74522 0.85118 0.83543 0.82527 0.82879 0.91456 0.89942 0.89951 0.91236 0.89891 0.93200 0.91964 0.92429 0.92282 0.92019 0.92130 0.91840 0.92091 0.92167 0.91980 0.82985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.23 8.67 71.24 0.62 0.84 16 2 C -0.10 -0.03 5.75 -21.05 -0.12 -0.16 16 3 C -0.23 0.29 5.54 24.68 0.14 0.43 16 4 C -0.04 0.16 2.76 71.23 0.20 0.35 16 5 O -0.53 2.36 9.85 -148.98 -1.47 0.89 16 6 Si 0.92 -3.50 26.59 68.60 1.82 -1.68 16 7 H -0.23 0.91 7.10 99.48 0.71 1.62 16 8 H -0.24 0.37 7.11 99.48 0.71 1.08 16 9 H -0.25 0.57 7.11 99.48 0.71 1.27 16 10 S 0.21 -0.10 19.79 -56.49 -1.12 -1.22 16 11 C -0.29 -1.30 6.45 24.07 0.16 -1.15 16 12 C 0.59 4.91 6.74 86.41 0.58 5.49 16 13 O -0.54 -7.64 14.24 -4.41 -0.06 -7.71 16 14 N -0.66 -3.43 3.40 -306.80 -1.04 -4.48 16 15 C 0.10 0.64 5.40 38.21 0.21 0.84 16 16 C -0.12 -0.86 8.70 22.38 0.19 -0.67 16 17 C -0.12 -0.36 10.04 22.27 0.22 -0.13 16 18 C -0.11 -0.04 10.04 22.28 0.22 0.18 16 19 C -0.14 -0.24 8.77 22.35 0.20 -0.04 16 20 C 0.10 0.43 4.65 22.60 0.11 0.53 16 21 O -0.56 -1.26 8.12 -93.39 -0.76 -2.02 16 22 Si 1.29 -0.50 8.03 68.60 0.55 0.06 16 23 C -0.51 0.11 8.31 113.37 0.94 1.05 16 24 C -0.51 -1.45 7.09 113.37 0.80 -0.64 16 25 C -0.37 0.61 0.53 -10.79 -0.01 0.61 16 26 C -0.14 0.23 7.85 71.98 0.56 0.79 16 27 C -0.14 0.34 7.85 71.98 0.56 0.90 16 28 C -0.14 0.29 7.85 71.98 0.56 0.86 16 29 C -0.04 -0.16 9.80 21.72 0.21 0.05 16 30 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.09 -0.17 6.42 -2.38 -0.02 -0.19 16 32 H 0.06 -0.14 8.13 -2.39 -0.02 -0.16 16 33 H 0.14 -0.95 7.96 -2.39 -0.02 -0.97 16 34 H 0.39 -3.78 8.66 -74.06 -0.64 -4.43 16 35 H 0.42 0.62 7.68 -92.71 -0.71 -0.09 16 36 H 0.13 1.31 6.17 -2.91 -0.02 1.29 16 37 H 0.15 -0.17 8.06 -2.91 -0.02 -0.19 16 38 H 0.16 -0.81 8.06 -2.91 -0.02 -0.84 16 39 H 0.15 -0.36 8.06 -2.92 -0.02 -0.38 16 40 H 0.07 0.08 7.38 -2.39 -0.02 0.07 16 41 H 0.08 -0.11 7.79 -2.39 -0.02 -0.12 16 42 H 0.08 -0.14 7.79 -2.39 -0.02 -0.16 16 43 H 0.07 0.15 7.13 -2.39 -0.02 0.14 16 44 H 0.08 0.10 7.79 -2.39 -0.02 0.08 16 45 H 0.05 0.37 7.05 -2.39 -0.02 0.35 16 46 H 0.06 -0.18 7.80 -2.39 -0.02 -0.19 16 47 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 48 H 0.06 -0.08 7.97 -2.39 -0.02 -0.10 16 49 H 0.06 -0.20 7.79 -2.38 -0.02 -0.21 16 50 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 51 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 52 H 0.06 -0.14 7.96 -2.39 -0.02 -0.16 16 53 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 54 H 0.06 -0.20 7.79 -2.38 -0.02 -0.22 16 55 H 0.15 0.60 8.06 -2.91 -0.02 0.58 16 Total: 0.00 -13.61 445.96 4.59 -9.01 By element: Atomic # 1 Polarization: -3.30 SS G_CDS: 0.30 Total: -3.00 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 6.36 Total: 10.14 kcal Atomic # 7 Polarization: -3.43 SS G_CDS: -1.04 Total: -4.48 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -2.29 Total: -8.83 kcal Atomic # 14 Polarization: -4.00 SS G_CDS: 2.37 Total: -1.62 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -1.12 Total: -1.22 kcal Total: -13.61 4.59 -9.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17509620_6739946.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.337 kcal (2) G-P(sol) polarization free energy of solvation -13.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds