Wall clock time and date at job start Tue Mar 9 2021 13:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86302 * 109.47345 * 2 1 4 4 C 1.50696 * 109.46742 * 239.99693 * 2 1 3 5 5 C 1.34504 * 125.49023 * 150.02947 * 4 2 1 6 6 C 1.46750 * 106.36394 * 180.20559 * 5 4 2 7 7 C 1.47261 * 126.96554 * 179.75730 * 6 5 4 8 8 O 1.21628 * 119.99867 * 180.02562 * 7 6 5 9 9 N 1.34770 * 120.00331 * 0.02702 * 7 6 5 10 10 C 1.46508 * 120.00332 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.84422 * 23.79780 * 10 9 7 12 12 C 1.53775 * 113.61548 * 154.99637 * 10 9 7 13 13 C 1.53788 * 87.07954 * 139.98107 * 12 10 9 14 14 H 1.08997 * 113.61208 * 89.20145 * 13 12 10 15 15 Br 1.96600 * 113.61469 * 220.01741 * 13 12 10 16 16 C 1.53779 * 87.08176 * 334.56765 * 13 12 10 17 17 C 1.36336 * 106.06409 * 359.61709 * 6 5 4 18 18 C 1.50996 * 126.79409 * 180.15506 * 17 6 5 19 19 C 1.53398 * 108.24697 * 164.57052 * 18 17 6 20 20 C 1.53157 * 109.04145 * 48.48793 * 19 18 17 21 21 C 1.53130 * 109.53014 * 290.42645 * 20 19 18 22 22 N 1.35212 * 108.65982 * 0.39162 * 17 6 5 23 23 H 0.96706 * 113.99720 * 300.00546 * 1 2 3 24 24 H 1.08999 * 109.46772 * 119.99927 * 2 1 3 25 25 H 1.48500 * 109.99950 * 178.68068 * 3 2 1 26 26 H 1.48499 * 109.99744 * 299.99918 * 3 2 1 27 27 H 1.08002 * 126.81398 * 359.93709 * 5 4 2 28 28 H 0.97005 * 120.00194 * 359.97438 * 9 7 6 29 29 H 1.08997 * 113.61651 * 254.53137 * 12 10 9 30 30 H 1.09001 * 113.61445 * 25.35309 * 12 10 9 31 31 H 1.08997 * 113.61291 * 270.88579 * 16 13 12 32 32 H 1.08996 * 113.61317 * 139.97542 * 16 13 12 33 33 H 1.08998 * 109.70644 * 284.26168 * 18 17 6 34 34 H 1.08999 * 109.70738 * 44.88355 * 18 17 6 35 35 H 1.08998 * 109.53618 * 168.35741 * 19 18 17 36 36 H 1.08998 * 109.54383 * 288.52956 * 19 18 17 37 37 H 1.08999 * 109.45981 * 50.44017 * 20 19 18 38 38 H 1.08993 * 109.46116 * 170.40861 * 20 19 18 39 39 H 1.08999 * 109.55853 * 291.14572 * 21 20 19 40 40 H 1.09004 * 109.56942 * 170.80916 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 3.0860 -0.4467 -1.8678 6 6 3.1530 -1.3745 -3.0028 7 6 4.2280 -1.4721 -4.0045 8 8 4.1532 -2.2930 -4.8988 9 7 5.2949 -0.6519 -3.9302 10 6 6.3647 -0.7495 -4.9264 11 1 6.0291 -1.1881 -5.8662 12 6 7.1613 0.5538 -5.1044 13 6 8.4212 -0.3224 -5.2045 14 1 8.6499 -0.6437 -6.2206 15 35 9.9800 0.4304 -4.2726 16 6 7.6596 -1.3741 -4.3805 17 6 2.0197 -2.1297 -2.9402 18 6 1.6163 -3.2355 -3.8860 19 6 0.4951 -4.0475 -3.2253 20 6 -0.5701 -3.0856 -2.6905 21 6 -0.0061 -2.3094 -1.4971 22 7 1.2884 -1.7252 -1.8772 23 1 -0.3933 0.4418 0.7651 24 1 1.7923 -0.5138 0.8900 25 1 3.5347 1.7702 0.0321 26 1 1.5616 2.4678 -1.2085 27 1 3.8165 0.3023 -1.6000 28 1 5.3544 0.0030 -3.2171 29 1 6.9260 1.0870 -6.0255 30 1 7.1451 1.1989 -4.2259 31 1 7.7808 -1.2566 -3.3037 32 1 7.8265 -2.3972 -4.7173 33 1 1.2573 -2.8063 -4.8214 34 1 2.4718 -3.8819 -4.0819 35 1 0.0469 -4.7156 -3.9607 36 1 0.9052 -4.6333 -2.4026 37 1 -0.8553 -2.3863 -3.4765 38 1 -1.4454 -3.6527 -2.3740 39 1 0.1325 -2.9864 -0.6541 40 1 -0.6978 -1.5143 -1.2189 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17509654_16915396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:28:24 Heat of formation + Delta-G solvation = 2.605292 kcal Electronic energy + Delta-G solvation = -23901.264715 eV Core-core repulsion = 20343.941344 eV Total energy + Delta-G solvation = -3557.323371 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.057 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.87450 -40.95380 -39.13110 -37.86434 -36.93521 -34.57937 -33.57578 -31.33599 -31.07837 -29.56644 -26.93688 -26.79456 -25.55078 -24.62445 -23.42073 -21.76811 -21.38865 -20.83273 -19.50768 -18.54084 -18.12848 -17.54272 -16.94933 -16.65978 -16.42373 -15.94873 -15.85277 -15.54589 -15.31323 -15.15686 -14.78280 -14.56111 -14.25109 -14.02093 -13.86653 -13.83915 -13.67535 -13.33275 -12.95620 -12.85060 -12.58363 -12.15730 -12.15180 -12.01149 -11.88559 -11.72638 -11.71688 -11.06424 -10.81930 -10.80429 -10.56487 -10.18876 -9.70647 -9.14586 -4.95721 0.58268 0.67338 0.94450 1.36765 1.69377 1.77578 2.07047 2.32637 2.36567 3.14842 3.15049 3.21964 3.49554 3.54989 3.60004 3.69381 3.74367 3.76646 3.79655 4.00847 4.22881 4.27932 4.35209 4.37387 4.45466 4.49604 4.51625 4.54074 4.66848 4.73256 4.75020 4.80352 4.82545 4.89722 4.93947 5.01159 5.09849 5.16798 5.43716 5.56315 5.93574 6.12215 6.49004 6.83795 7.19231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.052 4.052 3 Si 0.805 3.195 4 C 0.026 3.974 5 C -0.192 4.192 6 C -0.260 4.260 7 C 0.592 3.408 8 O -0.581 6.581 9 N -0.707 5.707 10 C 0.124 3.876 11 H 0.111 0.889 12 C -0.126 4.126 13 C -0.062 4.062 14 H 0.141 0.859 15 Br -0.169 7.169 16 C -0.138 4.138 17 C 0.105 3.895 18 C -0.053 4.053 19 C -0.124 4.124 20 C -0.134 4.134 21 C 0.098 3.902 22 N -0.423 5.423 23 H 0.409 0.591 24 H 0.100 0.900 25 H -0.280 1.280 26 H -0.310 1.310 27 H 0.156 0.844 28 H 0.410 0.590 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.074 1.840 6.235 8.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.160 4.160 3 Si 0.709 3.291 4 C -0.084 4.084 5 C -0.216 4.216 6 C -0.270 4.270 7 C 0.383 3.617 8 O -0.463 6.463 9 N -0.358 5.358 10 C 0.018 3.982 11 H 0.129 0.871 12 C -0.164 4.164 13 C -0.158 4.158 14 H 0.159 0.841 15 Br -0.088 7.088 16 C -0.177 4.177 17 C -0.014 4.014 18 C -0.091 4.091 19 C -0.161 4.161 20 C -0.172 4.172 21 C -0.021 4.021 22 N -0.099 5.099 23 H 0.262 0.738 24 H 0.118 0.882 25 H -0.207 1.207 26 H -0.239 1.239 27 H 0.173 0.827 28 H 0.246 0.754 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.109 0.891 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.374 1.680 5.121 6.941 hybrid contribution 0.155 -0.380 -0.343 0.535 sum -4.219 1.301 4.777 6.505 Atomic orbital electron populations 1.86315 1.16751 1.82398 1.51969 1.24587 0.86142 1.10651 0.94660 0.94521 0.77765 0.72471 0.84370 1.20300 0.94777 0.94188 0.99092 1.21808 0.99298 1.03290 0.97180 1.19967 0.98804 1.06036 1.02148 1.17504 0.81165 0.79818 0.83233 1.90730 1.80040 1.38385 1.37142 1.45625 1.20323 1.38488 1.31315 1.22407 0.85013 0.97637 0.93134 0.87092 1.23598 0.91266 0.96266 1.05304 1.25993 0.88968 0.99283 1.01559 0.84141 1.97441 1.45608 1.86341 1.79448 1.23714 0.93820 0.99127 1.01077 1.20678 0.91547 0.98153 0.90998 1.20472 0.99765 0.93275 0.95578 1.21712 0.95231 0.97845 1.01348 1.21939 0.99577 0.98639 0.97036 1.22491 0.81635 0.99326 0.98651 1.44140 1.17959 1.26686 1.21092 0.73788 0.88190 1.20691 1.23869 0.82661 0.75399 0.88139 0.87711 0.88453 0.89716 0.90098 0.89794 0.88904 0.91208 0.91563 0.86939 0.89125 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 3.19 9.97 -148.98 -1.49 1.70 16 2 C -0.05 0.18 2.99 71.23 0.21 0.39 16 3 Si 0.80 -3.68 31.23 68.60 2.14 -1.54 16 4 C 0.03 0.12 6.18 40.99 0.25 0.37 16 5 C -0.19 -1.18 9.09 23.64 0.21 -0.96 16 6 C -0.26 -2.57 6.28 -19.12 -0.12 -2.70 16 7 C 0.59 6.38 7.81 86.62 0.68 7.06 16 8 O -0.58 -9.58 14.95 -4.12 -0.06 -9.64 16 9 N -0.71 -2.81 5.35 -443.45 -2.37 -5.19 16 10 C 0.12 0.16 4.24 45.52 0.19 0.36 16 11 H 0.11 0.46 7.46 -2.39 -0.02 0.44 16 12 C -0.13 0.34 7.46 31.12 0.23 0.58 16 13 C -0.06 0.10 4.88 31.12 0.15 0.26 16 14 H 0.14 -0.55 8.14 -2.39 -0.02 -0.57 16 15 Br -0.17 -0.45 33.81 -20.37 -0.69 -1.14 16 16 C -0.14 0.01 7.51 31.12 0.23 0.24 16 17 C 0.11 0.91 6.57 41.69 0.27 1.18 16 18 C -0.05 -0.32 5.31 30.08 0.16 -0.16 16 19 C -0.12 0.05 5.98 30.78 0.18 0.24 16 20 C -0.13 0.34 5.92 30.69 0.18 0.52 16 21 C 0.10 -0.06 6.21 86.32 0.54 0.47 16 22 N -0.42 -2.23 3.11 -493.61 -1.54 -3.77 16 23 H 0.41 -6.59 8.74 -74.05 -0.65 -7.23 16 24 H 0.10 -0.75 7.96 -2.39 -0.02 -0.77 16 25 H -0.28 0.10 6.88 99.48 0.68 0.79 16 26 H -0.31 -1.63 7.11 99.48 0.71 -0.92 16 27 H 0.16 0.36 6.37 -2.91 -0.02 0.34 16 28 H 0.41 0.04 7.85 -92.70 -0.73 -0.69 16 29 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H 0.10 -0.36 8.10 -2.39 -0.02 -0.38 16 31 H 0.10 0.05 8.12 -2.39 -0.02 0.03 16 32 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 0.75 7.42 -2.39 -0.02 0.73 16 35 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 36 H 0.07 -0.03 8.12 -2.39 -0.02 -0.05 16 37 H 0.07 -0.03 8.11 -2.39 -0.02 -0.05 16 38 H 0.11 -0.79 8.14 -2.39 -0.02 -0.81 16 39 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.12 -0.16 5.94 -2.38 -0.01 -0.17 16 Total: 0.00 -20.58 340.02 -0.90 -21.48 By element: Atomic # 1 Polarization: -9.46 SS G_CDS: -0.28 Total: -9.75 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 3.38 Total: 7.84 kcal Atomic # 7 Polarization: -5.05 SS G_CDS: -3.91 Total: -8.96 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -1.55 Total: -7.94 kcal Atomic # 14 Polarization: -3.68 SS G_CDS: 2.14 Total: -1.54 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -0.69 Total: -1.14 kcal Total: -20.58 -0.90 -21.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17509654_16915396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.089 kcal (2) G-P(sol) polarization free energy of solvation -20.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds