Wall clock time and date at job start Tue Mar 9 2021 13:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35449 * 125.56556 * 2 1 4 4 C 1.50708 * 126.06495 * 0.05787 * 3 2 1 5 5 O 1.42905 * 109.46794 * 124.98110 * 4 3 2 6 6 Si 1.86297 * 109.46960 * 244.98140 * 4 3 2 7 7 C 1.39839 * 107.86785 * 179.77951 * 3 2 1 8 8 C 1.50692 * 126.45926 * 180.29976 * 7 3 2 9 9 C 1.37873 * 107.08303 * 0.41979 * 7 3 2 10 10 C 1.46674 * 126.23099 * 179.85064 * 9 7 3 11 11 O 1.21687 * 120.00256 * 359.70807 * 10 9 7 12 12 N 1.34777 * 119.99637 * 179.71474 * 10 9 7 13 13 C 1.47119 * 136.10321 * 354.21669 * 12 10 9 14 14 C 1.53540 * 88.05112 * 153.13075 * 13 12 10 15 15 C 1.46787 * 136.09703 * 174.21726 * 12 10 9 16 16 C 1.52842 * 113.40683 * 321.83223 * 15 12 10 17 17 C 1.53120 * 109.27125 * 73.95694 * 16 15 12 18 18 C 1.53071 * 109.38940 * 57.97756 * 17 16 15 19 19 C 1.53001 * 109.42318 * 178.33685 * 18 17 16 20 20 C 1.52972 * 109.70799 * 298.40863 * 18 17 16 21 21 C 1.52846 * 113.41665 * 92.03031 * 15 12 10 22 22 N 1.35532 * 125.56474 * 180.02562 * 2 1 3 23 23 H 1.09006 * 109.46824 * 274.99403 * 1 2 3 24 24 H 1.08993 * 109.47265 * 34.99335 * 1 2 3 25 25 H 1.09004 * 109.46920 * 154.99812 * 1 2 3 26 26 H 1.08993 * 109.46990 * 4.98125 * 4 3 2 27 27 H 0.96699 * 113.99744 * 180.02562 * 5 4 3 28 28 H 1.48501 * 109.99870 * 294.98516 * 6 4 3 29 29 H 1.48489 * 110.00314 * 56.30804 * 6 4 3 30 30 H 1.08994 * 109.47521 * 270.16786 * 8 7 3 31 31 H 1.09003 * 109.47428 * 30.16602 * 8 7 3 32 32 H 1.09000 * 109.47528 * 150.16298 * 8 7 3 33 33 H 1.09003 * 113.45709 * 267.93338 * 13 12 10 34 34 H 1.09005 * 113.45679 * 38.32959 * 13 12 10 35 35 H 1.09004 * 114.21972 * 272.26516 * 14 13 12 36 36 H 1.08999 * 114.22259 * 139.39520 * 14 13 12 37 37 H 1.08998 * 109.51211 * 193.91110 * 16 15 12 38 38 H 1.08999 * 109.51136 * 314.00643 * 16 15 12 39 39 H 1.08991 * 109.47987 * 178.02162 * 17 16 15 40 40 H 1.09008 * 109.47235 * 298.03569 * 17 16 15 41 41 H 1.08995 * 109.42667 * 58.48574 * 18 17 16 42 42 H 1.08994 * 109.47544 * 180.23803 * 19 18 17 43 43 H 1.09003 * 109.46978 * 300.24154 * 19 18 17 44 44 H 1.09005 * 109.47042 * 60.23904 * 19 18 17 45 45 H 1.09002 * 109.48079 * 301.63304 * 20 18 17 46 46 H 1.09007 * 109.47915 * 181.61884 * 20 18 17 47 47 H 1.09000 * 109.51352 * 45.94574 * 21 15 12 48 48 H 1.09000 * 109.51250 * 166.05168 * 21 15 12 49 49 H 0.97003 * 125.67872 * 359.93535 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 1.8199 2.5321 0.0012 5 8 2.4038 3.2269 1.1051 6 14 2.3279 3.3564 -1.5903 7 6 3.6270 0.6767 0.0051 8 6 4.8485 1.5591 0.0133 9 6 3.6123 -0.7019 -0.0015 10 6 4.7861 -1.5814 -0.0025 11 8 5.9049 -1.1030 -0.0025 12 7 4.6253 -2.9196 -0.0035 13 6 3.4913 -3.8512 0.0988 14 6 4.3232 -4.8686 -0.6952 15 6 5.5047 -4.0904 -0.1072 16 6 6.6575 -3.8985 -1.0921 17 6 7.6998 -2.9625 -0.4740 18 6 8.1928 -3.5538 0.8490 19 6 9.2644 -2.6398 1.4468 20 6 7.0233 -3.6747 1.8276 21 6 5.9697 -4.6227 1.2480 22 7 2.2953 -1.1025 -0.0005 23 1 -0.3633 0.0895 1.0238 24 1 -0.3633 0.8418 -0.5893 25 1 -0.3633 -0.9314 -0.4344 26 1 0.7339 2.5542 0.0914 27 1 2.1413 4.1554 1.1687 28 1 3.8084 3.4409 -1.6685 29 1 1.8009 2.5919 -2.7491 30 1 5.1462 1.7772 -1.0123 31 1 4.6204 2.4907 0.5312 32 1 5.6627 1.0479 0.5270 33 1 3.2798 -4.1667 1.1206 34 1 2.6012 -3.5110 -0.4304 35 1 4.2238 -4.7803 -1.7771 36 1 4.2392 -5.8937 -0.3345 37 1 7.1168 -4.8633 -1.3075 38 1 6.2782 -3.4616 -2.0159 39 1 8.5401 -2.8511 -1.1592 40 1 7.2489 -1.9872 -0.2904 41 1 8.6184 -4.5408 0.6687 42 1 9.6191 -3.0623 2.3869 43 1 10.0981 -2.5532 0.7499 44 1 8.8395 -1.6528 1.6295 45 1 6.5795 -2.6919 1.9869 46 1 7.3836 -4.0691 2.7777 47 1 5.1193 -4.6811 1.9275 48 1 6.4025 -5.6149 1.1204 49 1 1.9834 -2.0210 0.0000 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17514090_12297754.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:30:10 Heat of formation + Delta-G solvation = 16.371364 kcal Electronic energy + Delta-G solvation = -29203.698933 eV Core-core repulsion = 25520.177650 eV Total energy + Delta-G solvation = -3683.521283 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.96948 -42.04260 -39.14297 -37.91958 -37.59543 -34.05431 -33.38795 -32.15361 -31.89514 -30.72574 -29.35691 -27.48123 -26.86953 -26.30708 -24.25644 -23.35237 -23.13152 -21.43067 -21.00580 -20.07880 -19.50443 -18.46797 -18.26801 -17.53464 -17.03127 -16.77119 -16.05208 -15.66480 -15.54254 -15.25816 -15.17241 -14.97201 -14.86711 -14.73442 -14.51290 -14.24940 -14.01711 -13.95382 -13.68575 -13.61761 -13.55918 -13.33510 -13.27532 -13.23153 -12.95460 -12.70192 -12.56349 -12.47118 -12.42130 -12.19000 -11.94967 -11.82016 -11.53920 -11.19233 -10.95599 -10.54665 -10.32427 -9.89067 -9.61575 -9.08866 -4.96117 0.23811 1.13466 1.54806 1.57944 1.70406 1.91552 2.11343 2.19097 3.15287 3.38143 3.55222 3.62273 3.66336 3.73976 3.75722 3.88834 3.99167 4.01850 4.10383 4.20273 4.23351 4.25764 4.32163 4.38046 4.41907 4.42482 4.49493 4.52125 4.56424 4.59792 4.69709 4.70804 4.80623 4.82017 4.83017 4.89845 4.95193 4.96055 5.00494 5.02164 5.07705 5.11668 5.14323 5.23036 5.26922 5.33138 5.40288 5.53838 5.73002 5.76011 6.30866 6.55649 7.03727 7.14840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.086 3.914 3 C -0.200 4.200 4 C -0.022 4.022 5 O -0.563 6.563 6 Si 0.748 3.252 7 C -0.080 4.080 8 C -0.085 4.085 9 C -0.075 4.075 10 C 0.609 3.391 11 O -0.542 6.542 12 N -0.643 5.643 13 C 0.087 3.913 14 C -0.130 4.130 15 C 0.158 3.842 16 C -0.109 4.109 17 C -0.169 4.169 18 C -0.081 4.081 19 C -0.145 4.145 20 C -0.108 4.108 21 C -0.110 4.110 22 N -0.522 5.522 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.400 0.600 28 H -0.303 1.303 29 H -0.305 1.305 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.039 0.961 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.036 0.964 45 H 0.034 0.966 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.099 0.901 49 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.434 -3.687 0.493 10.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.034 4.034 3 C -0.206 4.206 4 C -0.133 4.133 5 O -0.372 6.372 6 Si 0.655 3.345 7 C -0.088 4.088 8 C -0.142 4.142 9 C -0.187 4.187 10 C 0.402 3.598 11 O -0.422 6.422 12 N -0.377 5.377 13 C -0.035 4.035 14 C -0.167 4.167 15 C 0.075 3.925 16 C -0.147 4.147 17 C -0.206 4.206 18 C -0.100 4.100 19 C -0.202 4.202 20 C -0.146 4.146 21 C -0.149 4.149 22 N -0.123 5.123 23 H 0.115 0.885 24 H 0.118 0.882 25 H 0.108 0.892 26 H 0.118 0.882 27 H 0.251 0.749 28 H -0.231 1.231 29 H -0.233 1.233 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.141 0.859 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.127 0.873 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.118 0.882 49 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -8.127 -4.058 -0.146 9.085 hybrid contribution 0.630 -0.602 0.040 0.872 sum -7.497 -4.660 -0.107 8.828 Atomic orbital electron populations 1.20698 0.83995 1.05485 1.05042 1.20917 0.95395 0.84839 1.02233 1.18886 0.92008 0.94687 1.15008 1.23885 1.00622 0.89751 0.99047 1.86472 1.73167 1.29092 1.48516 0.96010 0.78807 0.86156 0.73507 1.19999 0.95689 0.91655 1.01487 1.20309 0.94480 0.98685 1.00757 1.20035 0.83903 0.93541 1.21208 1.16676 0.86957 0.80331 0.75826 1.90427 1.24409 1.74204 1.53190 1.49843 1.13483 1.02513 1.71881 1.23391 0.90640 0.87101 1.02320 1.23460 0.92664 0.99649 1.00961 1.22089 0.92466 0.82060 0.95913 1.21602 0.95689 1.00510 0.96869 1.22581 0.98300 1.03786 0.95913 1.21011 0.95179 0.98870 0.94893 1.21787 0.98431 0.99199 1.00786 1.21480 0.95848 0.98863 0.98418 1.21750 0.99174 0.99710 0.94218 1.42147 1.04334 1.09302 1.56555 0.88477 0.88239 0.89159 0.88151 0.74929 1.23069 1.23308 0.93467 0.90405 0.91749 0.87173 0.89810 0.88392 0.85870 0.89517 0.93365 0.94254 0.87283 0.90967 0.92071 0.92963 0.94514 0.94700 0.91362 0.90134 0.88229 0.72816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.68 9.90 71.24 0.71 1.38 16 2 C 0.09 0.16 7.13 41.34 0.29 0.46 16 3 C -0.20 -1.46 4.49 -20.12 -0.09 -1.55 16 4 C -0.02 -0.03 2.76 71.24 0.20 0.16 16 5 O -0.56 -1.29 11.55 -148.98 -1.72 -3.01 16 6 Si 0.75 1.82 31.70 68.60 2.17 4.00 16 7 C -0.08 -1.02 5.87 -19.57 -0.11 -1.14 16 8 C -0.09 -1.28 8.19 71.23 0.58 -0.69 16 9 C -0.08 -0.75 7.02 40.35 0.28 -0.47 16 10 C 0.61 6.81 7.90 86.45 0.68 7.49 16 11 O -0.54 -9.50 10.94 -4.31 -0.05 -9.55 16 12 N -0.64 -1.96 3.36 -819.22 -2.75 -4.71 16 13 C 0.09 -0.56 7.20 82.86 0.60 0.04 16 14 C -0.13 0.93 7.61 30.85 0.23 1.16 16 15 C 0.16 -0.01 0.91 -0.06 0.00 -0.01 16 16 C -0.11 -0.44 5.19 30.58 0.16 -0.28 16 17 C -0.17 -1.59 5.06 30.66 0.15 -1.43 16 18 C -0.08 -0.49 2.67 -10.78 -0.03 -0.52 16 19 C -0.14 -1.09 9.19 71.98 0.66 -0.43 16 20 C -0.11 -0.50 5.20 30.63 0.16 -0.34 16 21 C -0.11 0.16 5.22 30.58 0.16 0.32 16 22 N -0.52 -1.05 5.92 -171.93 -1.02 -2.07 16 23 H 0.10 -0.85 8.14 -2.38 -0.02 -0.87 16 24 H 0.10 -0.89 7.42 -2.39 -0.02 -0.91 16 25 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 26 H 0.10 -0.52 6.76 -2.39 -0.02 -0.54 16 27 H 0.40 -3.40 8.74 -74.06 -0.65 -4.04 16 28 H -0.30 -3.51 6.27 99.48 0.62 -2.88 16 29 H -0.30 -2.74 7.11 99.48 0.71 -2.04 16 30 H 0.05 0.78 7.66 -2.39 -0.02 0.76 16 31 H 0.08 1.05 6.69 -2.39 -0.02 1.04 16 32 H 0.06 1.14 6.49 -2.39 -0.02 1.13 16 33 H 0.11 -1.06 7.29 -2.39 -0.02 -1.08 16 34 H 0.08 -0.81 6.03 -2.38 -0.01 -0.82 16 35 H 0.10 -0.64 8.12 -2.39 -0.02 -0.66 16 36 H 0.12 -1.48 8.10 -2.39 -0.02 -1.50 16 37 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.11 1.71 3.50 -63.04 -0.22 1.49 16 41 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.04 0.42 8.14 -2.38 -0.02 0.40 16 45 H 0.03 0.38 7.78 -2.39 -0.02 0.36 16 46 H 0.07 0.20 8.14 -2.38 -0.02 0.18 16 47 H 0.08 -0.31 7.02 -2.39 -0.02 -0.32 16 48 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 49 H 0.43 -2.05 5.75 -92.71 -0.53 -2.59 16 Total: 0.00 -24.73 365.23 0.80 -23.93 By element: Atomic # 1 Polarization: -12.27 SS G_CDS: -0.47 Total: -12.74 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 4.64 Total: 4.15 kcal Atomic # 7 Polarization: -3.01 SS G_CDS: -3.77 Total: -6.78 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -1.77 Total: -12.56 kcal Atomic # 14 Polarization: 1.82 SS G_CDS: 2.17 Total: 4.00 kcal Total: -24.73 0.80 -23.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17514090_12297754.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.298 kcal (2) G-P(sol) polarization free energy of solvation -24.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds