Wall clock time and date at job start Tue Mar 9 2021 13:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52968 * 109.43822 * 2 1 4 4 C 1.53122 * 109.44888 * 178.31609 * 3 2 1 5 5 C 1.52846 * 109.22470 * 58.00364 * 4 3 2 6 6 C 1.53478 * 113.45029 * 172.62741 * 5 4 3 7 7 C 1.53548 * 83.17822 * 271.26019 * 6 5 4 8 8 N 1.46776 * 113.41000 * 73.98083 * 5 4 3 9 9 C 1.34779 * 136.09927 * 267.98760 * 8 5 4 10 10 O 1.21281 * 119.99814 * 353.84444 * 9 8 5 11 11 C 1.50701 * 120.00382 * 173.84938 * 9 8 5 12 12 C 1.50696 * 109.47028 * 180.02562 * 11 9 8 13 13 C 1.38233 * 120.00272 * 89.99626 * 12 11 9 14 14 C 1.38238 * 119.99958 * 180.02562 * 13 12 11 15 15 C 1.38236 * 120.00217 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00297 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.46816 * 65.00068 * 16 15 14 18 18 Si 1.86299 * 109.46958 * 185.00163 * 16 15 14 19 19 C 1.38241 * 119.99708 * 0.25016 * 15 14 13 20 20 C 1.38234 * 119.99707 * 359.49492 * 19 15 14 21 21 C 1.52836 * 112.68561 * 303.42031 * 5 4 3 22 22 C 1.52977 * 109.43155 * 239.79256 * 2 1 3 23 23 H 1.08996 * 109.46973 * 59.99481 * 1 2 3 24 24 H 1.09001 * 109.46864 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46689 * 299.99731 * 1 2 3 26 26 H 1.08995 * 109.40769 * 119.89947 * 2 1 3 27 27 H 1.09002 * 109.47759 * 58.32005 * 3 2 1 28 28 H 1.09006 * 109.48360 * 298.31223 * 3 2 1 29 29 H 1.08996 * 109.50649 * 298.08238 * 4 3 2 30 30 H 1.08998 * 109.55187 * 177.95621 * 4 3 2 31 31 H 1.09000 * 114.41931 * 157.71780 * 6 5 4 32 32 H 1.09002 * 114.27463 * 24.79280 * 6 5 4 33 33 H 1.09004 * 113.45746 * 219.19253 * 7 6 5 34 34 H 1.08999 * 113.50770 * 88.79675 * 7 6 5 35 35 H 1.08991 * 109.47197 * 59.99597 * 11 9 8 36 36 H 1.09002 * 109.46797 * 299.99486 * 11 9 8 37 37 H 1.07994 * 119.99931 * 359.97438 * 13 12 11 38 38 H 1.08000 * 120.00152 * 179.97438 * 14 13 12 39 39 H 1.08998 * 109.46861 * 305.00334 * 16 15 14 40 40 H 0.96700 * 113.99931 * 60.00225 * 17 16 15 41 41 H 1.48505 * 109.99557 * 180.02562 * 18 16 15 42 42 H 1.48499 * 109.99808 * 301.31805 * 18 16 15 43 43 H 1.08001 * 119.99826 * 179.72085 * 19 15 14 44 44 H 1.08001 * 119.99709 * 180.23427 * 20 19 15 45 45 H 1.08998 * 109.51202 * 176.50108 * 21 5 4 46 46 H 1.09001 * 109.51499 * 296.65757 * 21 5 4 47 47 H 1.09000 * 109.46937 * 301.67605 * 22 2 1 48 48 H 1.08999 * 109.47477 * 61.69325 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0391 1.4425 0.0000 4 6 3.5697 1.4430 0.0424 5 6 4.1068 0.6665 -1.1596 6 6 5.6312 0.7564 -1.3132 7 6 5.2907 2.0045 -2.1402 8 7 3.9827 1.3955 -2.4275 9 6 3.0702 1.4760 -3.4161 10 8 2.1031 0.7441 -3.4097 11 6 3.2515 2.4752 -4.5295 12 6 2.1022 2.3627 -5.4976 13 6 0.9640 3.1247 -5.3108 14 6 -0.0905 3.0211 -6.1986 15 6 -0.0072 2.1551 -7.2728 16 6 -1.1570 2.0416 -8.2404 17 8 -1.3262 3.2836 -8.9267 18 14 -0.7988 0.6934 -9.4752 19 6 1.1287 1.3888 -7.4564 20 6 2.1853 1.4964 -6.5716 21 6 3.5696 -0.7628 -1.2258 22 6 2.0390 -0.7258 -1.2467 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8922 -0.5124 0.8912 27 1 1.6511 1.9648 0.8745 28 1 1.7005 1.9475 -0.9047 29 1 3.9085 0.9683 0.9633 30 1 3.9353 2.4692 0.0059 31 1 6.0746 -0.0551 -1.8902 32 1 6.1635 0.9662 -0.3854 33 1 5.9175 2.1237 -3.0240 34 1 5.2240 2.9153 -1.5452 35 1 4.1871 2.2727 -5.0506 36 1 3.2781 3.4822 -4.1131 37 1 0.8984 3.8004 -4.4709 38 1 -0.9799 3.6161 -6.0525 39 1 -2.0691 1.8012 -7.6941 40 1 -0.5518 3.5607 -9.4351 41 1 -1.9251 0.5720 -10.4354 42 1 0.4595 0.9938 -10.2043 43 1 1.1921 0.7089 -8.2931 44 1 3.0743 0.9006 -6.7171 45 1 3.9344 -1.2472 -2.1315 46 1 3.9084 -1.3200 -0.3523 47 1 1.6509 -1.7444 -1.2579 48 1 1.7003 -0.1979 -2.1382 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17514090_12335836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:30:20 Heat of formation + Delta-G solvation = 3.457155 kcal Electronic energy + Delta-G solvation = -27605.017802 eV Core-core repulsion = 24013.673906 eV Total energy + Delta-G solvation = -3591.343896 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.25110 -40.73016 -39.14827 -37.74111 -37.72579 -34.10356 -32.29321 -31.95366 -31.80203 -30.78181 -29.22622 -26.64909 -25.78423 -24.12873 -23.84097 -23.13438 -22.84330 -21.63127 -21.03487 -18.91501 -18.56806 -18.07891 -17.25660 -16.98163 -16.61365 -16.32478 -16.19602 -15.96356 -15.52484 -15.16406 -15.09387 -14.91444 -14.86980 -14.75169 -14.47431 -14.02470 -13.88024 -13.47518 -13.46658 -13.27160 -13.20786 -13.08310 -12.91040 -12.79397 -12.39838 -12.31322 -12.27521 -12.10797 -12.03432 -11.75966 -11.62293 -11.45286 -11.09577 -10.80288 -10.62309 -10.10530 -9.89290 -9.65506 -9.55115 -4.94716 0.21793 0.43728 1.27600 1.54859 1.65051 1.89483 1.92207 2.71365 3.36005 3.39450 3.59302 3.68038 3.72276 3.78575 3.80858 3.88036 3.89411 4.03061 4.08847 4.14710 4.30861 4.35859 4.39568 4.44182 4.49319 4.53235 4.55120 4.57055 4.59642 4.66368 4.69677 4.70876 4.79914 4.90801 4.92911 4.98258 5.02359 5.05781 5.06458 5.08108 5.11522 5.25449 5.31983 5.35082 5.37414 5.40928 5.51117 5.51657 5.57782 5.82276 5.99834 6.45616 6.85455 7.39036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.106 4.106 4 C -0.112 4.112 5 C 0.155 3.845 6 C -0.140 4.140 7 C 0.098 3.902 8 N -0.641 5.641 9 C 0.536 3.464 10 O -0.550 6.550 11 C -0.091 4.091 12 C -0.067 4.067 13 C -0.115 4.115 14 C -0.105 4.105 15 C -0.123 4.123 16 C -0.084 4.084 17 O -0.548 6.548 18 Si 0.762 3.238 19 C -0.123 4.123 20 C -0.109 4.109 21 C -0.107 4.107 22 C -0.168 4.168 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.039 0.961 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.386 0.614 41 H -0.301 1.301 42 H -0.277 1.277 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.050 0.950 46 H 0.075 0.925 47 H 0.034 0.966 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.911 1.320 3.157 8.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 C -0.144 4.144 4 C -0.150 4.150 5 C 0.071 3.929 6 C -0.178 4.178 7 C -0.024 4.024 8 N -0.376 5.376 9 C 0.328 3.672 10 O -0.430 6.430 11 C -0.130 4.130 12 C -0.067 4.067 13 C -0.133 4.133 14 C -0.124 4.124 15 C -0.124 4.124 16 C -0.193 4.193 17 O -0.356 6.356 18 Si 0.668 3.332 19 C -0.140 4.140 20 C -0.127 4.127 21 C -0.145 4.145 22 C -0.204 4.204 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.235 0.765 41 H -0.229 1.229 42 H -0.203 1.203 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.053 0.947 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.787 0.727 2.423 7.243 hybrid contribution -0.218 0.983 -0.341 1.063 sum 6.569 1.710 2.082 7.100 Atomic orbital electron populations 1.21782 0.95992 1.01272 1.01095 1.21039 0.95037 0.96204 0.98103 1.21461 0.95974 0.96069 1.00876 1.21738 0.95071 1.01026 0.97149 1.22043 0.95072 0.91767 0.84047 1.23509 0.93412 0.98546 1.02289 1.23227 0.81451 0.97478 1.00257 1.49963 1.21371 1.46321 1.19937 1.20487 0.80514 0.83607 0.82603 1.90337 1.31734 1.44487 1.76465 1.20645 0.98817 0.99980 0.93538 1.19522 0.95268 0.96590 0.95360 1.21179 0.93178 0.99803 0.99110 1.21079 0.98898 0.98220 0.94154 1.20308 0.96144 0.98432 0.97499 1.25218 1.00185 0.94285 0.99570 1.86565 1.43714 1.38203 1.67122 0.93936 0.76381 0.84834 0.78095 1.21177 0.93308 0.99272 1.00285 1.21177 0.99359 0.97856 0.94283 1.21542 0.96031 0.95479 1.01412 1.22587 0.95672 1.00083 1.02058 0.94175 0.93151 0.92261 0.91598 0.91555 0.94211 0.89107 0.89866 0.88699 0.87140 0.88536 0.87987 0.85915 0.86372 0.85425 0.85910 0.86409 0.76503 1.22903 1.20333 0.84333 0.84387 0.93154 0.90602 0.94708 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.19 71.98 0.66 -0.12 16 2 C -0.09 -0.36 2.67 -10.81 -0.03 -0.39 16 3 C -0.11 -0.20 5.20 30.62 0.16 -0.04 16 4 C -0.11 0.36 5.22 30.58 0.16 0.52 16 5 C 0.16 -0.35 0.92 0.03 0.00 -0.35 16 6 C -0.14 1.14 7.63 30.94 0.24 1.37 16 7 C 0.10 -0.89 8.05 82.87 0.67 -0.22 16 8 N -0.64 1.15 3.36 -814.01 -2.73 -1.58 16 9 C 0.54 1.46 7.99 87.66 0.70 2.16 16 10 O -0.55 -5.85 12.40 -3.03 -0.04 -5.89 16 11 C -0.09 0.24 5.67 29.10 0.16 0.41 16 12 C -0.07 -0.15 4.37 -19.87 -0.09 -0.24 16 13 C -0.11 -0.45 9.70 22.27 0.22 -0.23 16 14 C -0.11 -0.54 9.69 22.27 0.22 -0.32 16 15 C -0.12 -0.49 5.35 -19.86 -0.11 -0.59 16 16 C -0.08 -0.24 2.80 71.24 0.20 -0.04 16 17 O -0.55 -2.86 12.83 -148.98 -1.91 -4.77 16 18 Si 0.76 0.64 29.88 68.60 2.05 2.68 16 19 C -0.12 -0.30 8.67 22.27 0.19 -0.11 16 20 C -0.11 -0.24 9.70 22.27 0.22 -0.02 16 21 C -0.11 -0.26 5.13 30.58 0.16 -0.10 16 22 C -0.17 -1.19 5.04 30.63 0.15 -1.03 16 23 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 24 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 25 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 26 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.04 0.25 8.14 -2.38 -0.02 0.23 16 29 H 0.09 -0.48 8.14 -2.39 -0.02 -0.49 16 30 H 0.08 -0.49 7.00 -2.39 -0.02 -0.51 16 31 H 0.09 -0.70 8.13 -2.39 -0.02 -0.72 16 32 H 0.11 -1.28 8.11 -2.39 -0.02 -1.30 16 33 H 0.10 -1.16 8.14 -2.38 -0.02 -1.18 16 34 H 0.10 -1.20 7.27 -2.39 -0.02 -1.22 16 35 H 0.12 -0.88 8.09 -2.39 -0.02 -0.90 16 36 H 0.12 -0.73 8.08 -2.39 -0.02 -0.75 16 37 H 0.13 0.18 8.06 -2.91 -0.02 0.16 16 38 H 0.12 0.55 8.06 -2.91 -0.02 0.53 16 39 H 0.12 0.26 7.96 -2.39 -0.02 0.24 16 40 H 0.39 -0.29 8.70 -74.06 -0.64 -0.93 16 41 H -0.30 -2.43 7.11 99.48 0.71 -1.72 16 42 H -0.28 -0.97 7.01 99.48 0.70 -0.27 16 43 H 0.14 -0.15 4.85 -2.91 -0.01 -0.17 16 44 H 0.14 -0.22 8.06 -2.91 -0.02 -0.24 16 45 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 48 H 0.12 1.40 3.55 -63.58 -0.23 1.18 16 Total: 0.00 -16.85 371.05 1.35 -15.49 By element: Atomic # 1 Polarization: -6.68 SS G_CDS: 0.11 Total: -6.58 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 3.88 Total: 0.64 kcal Atomic # 7 Polarization: 1.15 SS G_CDS: -2.73 Total: -1.58 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -1.95 Total: -10.66 kcal Atomic # 14 Polarization: 0.64 SS G_CDS: 2.05 Total: 2.68 kcal Total: -16.85 1.35 -15.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17514090_12335836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.949 kcal (2) G-P(sol) polarization free energy of solvation -16.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds