Wall clock time and date at job start Tue Mar 9 2021 13:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86304 * 109.47247 * 2 1 4 4 C 1.50701 * 109.46950 * 239.99892 * 2 1 3 5 5 C 1.35083 * 126.07281 * 104.00854 * 4 2 1 6 6 N 1.35040 * 107.97787 * 180.02562 * 5 4 2 7 7 C 1.46499 * 125.93402 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47489 * 124.99280 * 7 6 5 9 9 O 1.21284 * 119.99930 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00217 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99896 * 180.02562 * 10 8 7 12 12 H 1.09002 * 112.84999 * 336.20103 * 11 10 8 13 13 C 1.53774 * 113.61331 * 107.50890 * 11 10 8 14 14 C 1.53773 * 87.08611 * 89.11408 * 13 11 10 15 15 H 1.09001 * 113.69245 * 270.87371 * 14 13 11 16 16 C 1.52995 * 113.61767 * 139.97999 * 14 13 11 17 17 N 1.47312 * 110.60106 * 196.67792 * 16 14 13 18 18 C 1.34523 * 106.61993 * 241.47424 * 17 16 14 19 19 O 1.21545 * 123.77525 * 179.97438 * 18 17 16 20 20 N 1.33792 * 112.45787 * 359.97438 * 18 17 16 21 21 C 1.34768 * 111.64231 * 0.02562 * 20 18 17 22 22 O 1.21234 * 127.15294 * 180.02562 * 21 20 18 23 23 C 1.53784 * 87.08130 * 25.43337 * 14 13 11 24 24 N 1.40068 * 108.13675 * 359.97438 * 6 5 4 25 25 C 1.31623 * 108.11117 * 359.72204 * 24 6 5 26 26 C 1.48420 * 126.03915 * 180.29081 * 25 24 6 27 27 C 1.39323 * 120.11837 * 43.19983 * 26 25 24 28 28 C 1.38021 * 119.87524 * 179.74308 * 27 26 25 29 29 C 1.38316 * 120.12376 * 0.55318 * 28 27 26 30 30 C 1.38321 * 120.23870 * 359.70157 * 29 28 27 31 31 C 1.38021 * 120.12087 * 0.02562 * 30 29 28 32 32 H 0.96701 * 114.00390 * 300.00410 * 1 2 3 33 33 H 1.09002 * 109.46779 * 119.99675 * 2 1 3 34 34 H 1.48496 * 109.99929 * 299.99862 * 3 2 1 35 35 H 1.48494 * 110.00035 * 61.31689 * 3 2 1 36 36 H 1.07996 * 126.01559 * 0.02805 * 5 4 2 37 37 H 1.08993 * 109.47149 * 244.99795 * 7 6 5 38 38 H 1.09002 * 109.46870 * 4.99892 * 7 6 5 39 39 H 0.96999 * 119.99819 * 0.02562 * 10 8 7 40 40 H 1.09005 * 113.61266 * 203.66664 * 13 11 10 41 41 H 1.09003 * 113.61693 * 334.56310 * 13 11 10 42 42 H 1.09001 * 110.53586 * 319.67485 * 16 14 13 43 43 H 0.97004 * 126.69390 * 61.45117 * 17 16 14 44 44 H 0.97005 * 124.17926 * 179.97438 * 20 18 17 45 45 H 1.09001 * 113.61592 * 220.02770 * 23 14 13 46 46 H 1.08994 * 113.61367 * 89.11600 * 23 14 13 47 47 H 1.07991 * 120.06206 * 0.02562 * 27 26 25 48 48 H 1.08000 * 119.93834 * 180.27751 * 28 27 26 49 49 H 1.07997 * 119.88373 * 179.72140 * 29 28 27 50 50 H 1.07998 * 119.94181 * 180.02562 * 30 29 28 51 51 H 1.07997 * 120.06310 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4456 -0.1239 -2.3333 6 7 2.7772 -1.0984 -3.2074 7 6 3.3690 -0.8996 -4.5327 8 6 4.6451 -1.6943 -4.6374 9 8 5.0228 -2.3615 -3.6976 10 7 5.3662 -1.6644 -5.7756 11 6 6.6065 -2.4375 -5.8775 12 1 7.0556 -2.6471 -4.9067 13 6 6.4888 -3.6741 -6.7838 14 6 6.8995 -2.7608 -7.9508 15 1 6.0578 -2.2735 -8.4428 16 6 7.8624 -3.4233 -8.9381 17 7 8.5176 -2.4095 -9.7825 18 6 8.1621 -2.6779 -11.0518 19 8 8.5319 -2.0267 -12.0092 20 7 7.3560 -3.7418 -11.1428 21 6 7.1023 -4.2781 -9.9326 22 8 6.4107 -5.2438 -9.6901 23 6 7.6003 -1.8747 -6.9074 24 7 2.4580 -2.3323 -2.6265 25 6 1.9538 -2.1041 -1.4323 26 6 1.4875 -3.1335 -0.4701 27 6 2.2399 -4.2874 -0.2615 28 6 1.8043 -5.2389 0.6384 29 6 0.6174 -5.0539 1.3241 30 6 -0.1362 -3.9126 1.1170 31 6 0.2929 -2.9521 0.2235 32 1 -0.3934 0.4417 0.7650 33 1 1.7923 -0.5138 0.8900 34 1 1.5616 2.4679 -1.2085 35 1 1.5879 2.4586 1.2242 36 1 2.5698 0.9375 -2.4887 37 1 2.6685 -1.2348 -5.2975 38 1 3.5870 0.1585 -4.6782 39 1 5.0639 -1.1311 -6.5274 40 1 7.2196 -4.4511 -6.5593 41 1 5.4725 -4.0591 -6.8675 42 1 8.6036 -4.0206 -8.4070 43 1 9.0930 -1.6887 -9.4819 44 1 6.9978 -4.0844 -11.9766 45 1 7.4811 -0.8068 -7.0907 46 1 8.6349 -2.1597 -6.7168 47 1 3.1646 -4.4349 -0.7996 48 1 2.3891 -6.1316 0.8042 49 1 0.2780 -5.8030 2.0241 50 1 -1.0619 -3.7729 1.6553 51 1 -0.2961 -2.0612 0.0628 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17522896_12622748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:36:01 Heat of formation + Delta-G solvation = 41.230925 kcal Electronic energy + Delta-G solvation = -38141.123952 eV Core-core repulsion = 33011.219320 eV Total energy + Delta-G solvation = -5129.904632 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.163 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.57476 -42.40903 -41.33085 -39.87303 -39.64941 -39.34434 -37.78135 -37.22521 -35.20057 -34.79631 -34.11083 -32.27810 -31.70955 -31.35560 -29.85483 -28.64913 -27.05963 -25.97723 -25.26436 -24.06285 -23.79384 -23.28076 -22.72773 -22.19769 -21.45393 -20.73948 -20.68705 -19.51043 -18.61687 -18.42652 -18.34400 -18.06565 -17.80417 -17.49358 -17.27096 -16.85821 -16.79930 -16.54519 -16.21623 -16.00596 -15.81341 -15.70967 -15.69840 -15.37147 -15.21845 -15.04175 -14.69833 -14.65708 -14.29702 -14.19692 -14.01633 -13.88831 -13.75707 -13.63241 -13.44442 -13.34330 -12.88515 -12.67951 -12.37818 -12.28690 -11.99182 -11.96844 -11.78314 -11.76970 -11.51662 -11.48853 -11.28818 -11.15474 -10.69642 -10.51884 -10.30845 -10.29851 -9.66388 -9.60088 -9.19325 -4.95849 0.29951 0.42456 0.68983 0.86480 1.19089 1.23801 1.33358 1.37089 1.57209 1.80082 1.86157 1.91171 1.93015 1.95269 2.63893 3.03735 3.05356 3.23572 3.27814 3.32727 3.41224 3.47926 3.56016 3.65418 3.67006 3.78570 3.83906 3.97387 4.13232 4.14517 4.22448 4.26555 4.33792 4.38911 4.40122 4.48013 4.52920 4.60224 4.67327 4.77046 4.77915 4.82675 4.88193 4.90789 4.93197 5.17490 5.29364 5.35071 5.46442 5.55650 5.73955 5.78351 5.79663 5.81625 5.86869 6.19563 6.21351 6.23531 6.52713 6.73353 6.97916 6.98054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.034 4.034 3 Si 0.681 3.319 4 C -0.202 4.202 5 C 0.065 3.935 6 N -0.360 5.360 7 C 0.117 3.883 8 C 0.503 3.497 9 O -0.498 6.498 10 N -0.715 5.715 11 C 0.124 3.876 12 H 0.111 0.889 13 C -0.137 4.137 14 C -0.115 4.115 15 H 0.101 0.899 16 C 0.102 3.898 17 N -0.720 5.720 18 C 0.703 3.297 19 O -0.540 6.540 20 N -0.681 5.681 21 C 0.526 3.474 22 O -0.457 6.457 23 C -0.136 4.136 24 N -0.249 5.249 25 C 0.133 3.867 26 C -0.019 4.019 27 C -0.089 4.089 28 C -0.125 4.125 29 C -0.112 4.112 30 C -0.126 4.126 31 C -0.095 4.095 32 H 0.377 0.623 33 H 0.074 0.926 34 H -0.254 1.254 35 H -0.259 1.259 36 H 0.178 0.822 37 H 0.118 0.882 38 H 0.129 0.871 39 H 0.402 0.598 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.132 0.868 43 H 0.442 0.558 44 H 0.434 0.566 45 H 0.082 0.918 46 H 0.103 0.897 47 H 0.125 0.875 48 H 0.124 0.876 49 H 0.122 0.878 50 H 0.124 0.876 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.871 4.589 1.267 5.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.145 4.145 3 Si 0.582 3.418 4 C -0.214 4.214 5 C -0.079 4.079 6 N -0.141 5.141 7 C -0.009 4.009 8 C 0.287 3.713 9 O -0.370 6.370 10 N -0.368 5.368 11 C 0.019 3.981 12 H 0.129 0.871 13 C -0.177 4.177 14 C -0.134 4.134 15 H 0.119 0.881 16 C -0.007 4.007 17 N -0.385 5.385 18 C 0.402 3.598 19 O -0.413 6.413 20 N -0.353 5.353 21 C 0.311 3.689 22 O -0.325 6.325 23 C -0.174 4.174 24 N -0.069 5.069 25 C -0.033 4.033 26 C -0.021 4.021 27 C -0.108 4.108 28 C -0.143 4.143 29 C -0.131 4.131 30 C -0.144 4.144 31 C -0.114 4.114 32 H 0.224 0.776 33 H 0.092 0.908 34 H -0.179 1.179 35 H -0.184 1.184 36 H 0.195 0.805 37 H 0.136 0.864 38 H 0.147 0.853 39 H 0.236 0.764 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.150 0.850 43 H 0.287 0.713 44 H 0.277 0.723 45 H 0.101 0.899 46 H 0.122 0.878 47 H 0.143 0.857 48 H 0.142 0.858 49 H 0.140 0.860 50 H 0.142 0.858 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.279 3.628 0.076 4.891 hybrid contribution -1.306 0.861 0.165 1.573 sum 1.973 4.489 0.241 4.909 Atomic orbital electron populations 1.86575 1.18472 1.79530 1.49718 1.23943 0.83687 1.09916 0.96958 0.95127 0.91584 0.74528 0.80580 1.19248 1.12206 0.92371 0.97528 1.22204 1.00437 0.95327 0.89949 1.47775 1.48590 1.04326 1.13443 1.21487 0.94051 1.02465 0.82875 1.20540 0.85244 0.82574 0.82963 1.90835 1.69033 1.39912 1.37239 1.45568 1.24724 1.50274 1.16240 1.21786 0.84575 0.91747 1.00036 0.87141 1.23451 1.03906 0.96918 0.93403 1.22877 0.97995 0.98731 0.93828 0.88075 1.22181 0.96101 0.89834 0.92606 1.45522 1.53368 1.34215 1.05430 1.15878 0.78884 0.80489 0.84521 1.91105 1.58722 1.52661 1.38831 1.44376 1.48023 1.30393 1.12477 1.20795 0.80336 0.83780 0.83958 1.90895 1.35777 1.24096 1.81761 1.23368 0.99594 1.00271 0.94137 1.77808 1.18899 1.01513 1.08655 1.20622 0.97875 0.92314 0.92498 1.17771 0.95586 0.92773 0.95962 1.21258 0.99665 0.92592 0.97311 1.21097 0.96884 0.99301 0.97051 1.21282 0.94869 0.97610 0.99296 1.21109 1.00124 0.94295 0.98918 1.21610 0.95085 0.99808 0.94912 0.77555 0.90803 1.17911 1.18398 0.80509 0.86414 0.85307 0.76359 0.88097 0.89956 0.85021 0.71302 0.72300 0.89913 0.87813 0.85663 0.85773 0.85994 0.85822 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.41 10.41 -35.23 -0.37 -0.78 16 2 C -0.03 -0.02 2.16 36.01 0.08 0.06 16 3 Si 0.68 -0.87 30.81 -169.99 -5.24 -6.11 16 4 C -0.20 -0.52 5.38 -104.76 -0.56 -1.08 16 5 C 0.07 0.05 9.96 -17.26 -0.17 -0.12 16 6 N -0.36 -0.64 3.40 -62.59 -0.21 -0.85 16 7 C 0.12 -0.31 6.99 -5.20 -0.04 -0.35 16 8 C 0.50 -0.33 7.86 -10.99 -0.09 -0.41 16 9 O -0.50 -2.21 15.30 5.55 0.08 -2.13 16 10 N -0.71 2.86 5.26 -53.02 -0.28 2.58 16 11 C 0.12 -0.46 4.32 -67.12 -0.29 -0.75 16 12 H 0.11 -0.19 7.46 -51.93 -0.39 -0.57 16 13 C -0.14 0.49 7.43 -25.93 -0.19 0.30 16 14 C -0.11 0.61 3.26 -89.81 -0.29 0.32 16 15 H 0.10 -0.53 8.14 -51.93 -0.42 -0.95 16 16 C 0.10 -0.47 3.38 -68.21 -0.23 -0.70 16 17 N -0.72 2.96 6.15 -59.20 -0.36 2.60 16 18 C 0.70 -0.36 8.99 -88.02 -0.79 -1.15 16 19 O -0.54 -2.10 18.04 5.33 0.10 -2.00 16 20 N -0.68 1.21 5.70 -15.79 -0.09 1.12 16 21 C 0.53 -0.80 8.14 -10.56 -0.09 -0.89 16 22 O -0.46 -0.84 18.02 5.60 0.10 -0.74 16 23 C -0.14 0.86 7.30 -25.91 -0.19 0.67 16 24 N -0.25 -1.33 11.67 33.43 0.39 -0.94 16 25 C 0.13 0.64 6.66 -82.78 -0.55 0.09 16 26 C -0.02 -0.08 5.74 -104.89 -0.60 -0.69 16 27 C -0.09 -0.36 9.78 -39.26 -0.38 -0.74 16 28 C -0.13 -0.31 10.03 -39.63 -0.40 -0.71 16 29 C -0.11 -0.21 10.04 -39.52 -0.40 -0.61 16 30 C -0.13 -0.26 10.03 -39.63 -0.40 -0.66 16 31 C -0.10 -0.31 9.05 -39.26 -0.36 -0.67 16 32 H 0.38 -1.18 8.74 45.56 0.40 -0.78 16 33 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 34 H -0.25 -0.17 7.02 56.52 0.40 0.23 16 35 H -0.26 -0.21 7.11 56.52 0.40 0.19 16 36 H 0.18 -0.47 6.37 -52.49 -0.33 -0.81 16 37 H 0.12 -0.51 8.14 -51.93 -0.42 -0.94 16 38 H 0.13 -0.89 8.07 -51.93 -0.42 -1.31 16 39 H 0.40 -2.79 8.70 -40.82 -0.36 -3.14 16 40 H 0.10 -0.40 8.03 -51.93 -0.42 -0.82 16 41 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 42 H 0.13 -0.81 8.05 -51.93 -0.42 -1.23 16 43 H 0.44 -2.61 8.96 -40.82 -0.37 -2.97 16 44 H 0.43 -1.22 8.96 -40.82 -0.37 -1.59 16 45 H 0.08 -0.57 8.14 -51.93 -0.42 -0.99 16 46 H 0.10 -0.75 8.10 -51.93 -0.42 -1.17 16 47 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 48 H 0.12 0.08 8.06 -52.49 -0.42 -0.35 16 49 H 0.12 -0.02 8.06 -52.49 -0.42 -0.44 16 50 H 0.12 0.01 8.06 -52.49 -0.42 -0.42 16 51 H 0.14 0.42 5.34 -52.49 -0.28 0.14 16 LS Contribution 434.98 15.07 6.56 6.56 Total: 0.00 -15.92 434.98 -11.63 -27.55 By element: Atomic # 1 Polarization: -12.40 SS G_CDS: -6.36 Total: -18.76 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -5.94 Total: -8.09 kcal Atomic # 7 Polarization: 5.07 SS G_CDS: -0.56 Total: 4.51 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.08 Total: -5.65 kcal Atomic # 14 Polarization: -0.87 SS G_CDS: -5.24 Total: -6.11 kcal Total LS contribution 6.56 Total: 6.56 kcal Total: -15.92 -11.63 -27.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_12622748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.776 kcal (2) G-P(sol) polarization free energy of solvation -15.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds