Wall clock time and date at job start Tue Mar 9 2021 13:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86304 * 109.47247 * 2 1 4 4 C 1.50701 * 109.46950 * 239.99892 * 2 1 3 5 5 C 1.35083 * 126.07281 * 104.00854 * 4 2 1 6 6 N 1.35040 * 107.97787 * 180.02562 * 5 4 2 7 7 C 1.46499 * 125.93402 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47489 * 124.99280 * 7 6 5 9 9 O 1.21284 * 119.99930 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00217 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99896 * 180.02562 * 10 8 7 12 12 H 1.09002 * 112.84999 * 336.20103 * 11 10 8 13 13 C 1.53774 * 113.61331 * 107.50890 * 11 10 8 14 14 C 1.53773 * 87.08611 * 89.11408 * 13 11 10 15 15 H 1.09001 * 113.69245 * 270.87371 * 14 13 11 16 16 C 1.52995 * 113.61767 * 139.97999 * 14 13 11 17 17 N 1.47312 * 110.60106 * 196.67792 * 16 14 13 18 18 C 1.34523 * 106.61993 * 241.47424 * 17 16 14 19 19 O 1.21545 * 123.77525 * 179.97438 * 18 17 16 20 20 N 1.33792 * 112.45787 * 359.97438 * 18 17 16 21 21 C 1.34768 * 111.64231 * 0.02562 * 20 18 17 22 22 O 1.21234 * 127.15294 * 180.02562 * 21 20 18 23 23 C 1.53784 * 87.08130 * 25.43337 * 14 13 11 24 24 N 1.40068 * 108.13675 * 359.97438 * 6 5 4 25 25 C 1.31623 * 108.11117 * 359.72204 * 24 6 5 26 26 C 1.48420 * 126.03915 * 180.29081 * 25 24 6 27 27 C 1.39323 * 120.11837 * 43.19983 * 26 25 24 28 28 C 1.38021 * 119.87524 * 179.74308 * 27 26 25 29 29 C 1.38316 * 120.12376 * 0.55318 * 28 27 26 30 30 C 1.38321 * 120.23870 * 359.70157 * 29 28 27 31 31 C 1.38021 * 120.12087 * 0.02562 * 30 29 28 32 32 H 0.96701 * 114.00390 * 300.00410 * 1 2 3 33 33 H 1.09002 * 109.46779 * 119.99675 * 2 1 3 34 34 H 1.48496 * 109.99929 * 299.99862 * 3 2 1 35 35 H 1.48494 * 110.00035 * 61.31689 * 3 2 1 36 36 H 1.07996 * 126.01559 * 0.02805 * 5 4 2 37 37 H 1.08993 * 109.47149 * 244.99795 * 7 6 5 38 38 H 1.09002 * 109.46870 * 4.99892 * 7 6 5 39 39 H 0.96999 * 119.99819 * 0.02562 * 10 8 7 40 40 H 1.09005 * 113.61266 * 203.66664 * 13 11 10 41 41 H 1.09003 * 113.61693 * 334.56310 * 13 11 10 42 42 H 1.09001 * 110.53586 * 319.67485 * 16 14 13 43 43 H 0.97004 * 126.69390 * 61.45117 * 17 16 14 44 44 H 0.97005 * 124.17926 * 179.97438 * 20 18 17 45 45 H 1.09001 * 113.61592 * 220.02770 * 23 14 13 46 46 H 1.08994 * 113.61367 * 89.11600 * 23 14 13 47 47 H 1.07991 * 120.06206 * 0.02562 * 27 26 25 48 48 H 1.08000 * 119.93834 * 180.27751 * 28 27 26 49 49 H 1.07997 * 119.88373 * 179.72140 * 29 28 27 50 50 H 1.07998 * 119.94181 * 180.02562 * 30 29 28 51 51 H 1.07997 * 120.06310 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4456 -0.1239 -2.3333 6 7 2.7772 -1.0984 -3.2074 7 6 3.3690 -0.8996 -4.5327 8 6 4.6451 -1.6943 -4.6374 9 8 5.0228 -2.3615 -3.6976 10 7 5.3662 -1.6644 -5.7756 11 6 6.6065 -2.4375 -5.8775 12 1 7.0556 -2.6471 -4.9067 13 6 6.4888 -3.6741 -6.7838 14 6 6.8995 -2.7608 -7.9508 15 1 6.0578 -2.2735 -8.4428 16 6 7.8624 -3.4233 -8.9381 17 7 8.5176 -2.4095 -9.7825 18 6 8.1621 -2.6779 -11.0518 19 8 8.5319 -2.0267 -12.0092 20 7 7.3560 -3.7418 -11.1428 21 6 7.1023 -4.2781 -9.9326 22 8 6.4107 -5.2438 -9.6901 23 6 7.6003 -1.8747 -6.9074 24 7 2.4580 -2.3323 -2.6265 25 6 1.9538 -2.1041 -1.4323 26 6 1.4875 -3.1335 -0.4701 27 6 2.2399 -4.2874 -0.2615 28 6 1.8043 -5.2389 0.6384 29 6 0.6174 -5.0539 1.3241 30 6 -0.1362 -3.9126 1.1170 31 6 0.2929 -2.9521 0.2235 32 1 -0.3934 0.4417 0.7650 33 1 1.7923 -0.5138 0.8900 34 1 1.5616 2.4679 -1.2085 35 1 1.5879 2.4586 1.2242 36 1 2.5698 0.9375 -2.4887 37 1 2.6685 -1.2348 -5.2975 38 1 3.5870 0.1585 -4.6782 39 1 5.0639 -1.1311 -6.5274 40 1 7.2196 -4.4511 -6.5593 41 1 5.4725 -4.0591 -6.8675 42 1 8.6036 -4.0206 -8.4070 43 1 9.0930 -1.6887 -9.4819 44 1 6.9978 -4.0844 -11.9766 45 1 7.4811 -0.8068 -7.0907 46 1 8.6349 -2.1597 -6.7168 47 1 3.1646 -4.4349 -0.7996 48 1 2.3891 -6.1316 0.8042 49 1 0.2780 -5.8030 2.0241 50 1 -1.0619 -3.7729 1.6553 51 1 -0.2961 -2.0612 0.0628 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17522896_12622748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:36:00 Heat of formation + Delta-G solvation = 30.880270 kcal Electronic energy + Delta-G solvation = -38141.572790 eV Core-core repulsion = 33011.219320 eV Total energy + Delta-G solvation = -5130.353470 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.163 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.45442 -42.47605 -41.17295 -39.89923 -39.74417 -39.27793 -37.78064 -37.23731 -35.07650 -34.81431 -33.97250 -32.35949 -31.86737 -31.47900 -29.70093 -28.58180 -26.70842 -25.97360 -25.15145 -24.12153 -23.68813 -23.46090 -22.54854 -22.11648 -21.50651 -20.79477 -20.46578 -19.42496 -18.53262 -18.42421 -18.32015 -17.93759 -17.70080 -17.51501 -17.11685 -16.75291 -16.72771 -16.46630 -16.19954 -15.98442 -15.92428 -15.66150 -15.57541 -15.41518 -15.19479 -15.06006 -14.73392 -14.60812 -14.36002 -14.08821 -14.00021 -13.78009 -13.66347 -13.54985 -13.37641 -13.25144 -12.66023 -12.61637 -12.35935 -12.32676 -12.14079 -11.91629 -11.83430 -11.57385 -11.53041 -11.45442 -11.19516 -11.16920 -10.62499 -10.49467 -10.29481 -10.10569 -9.87351 -9.73725 -9.33511 -4.83599 0.10482 0.47552 0.50722 0.81904 1.27738 1.39643 1.40976 1.48480 1.65103 1.66905 1.92034 1.99386 2.08948 2.14082 2.83862 2.87486 3.31146 3.36940 3.56557 3.62570 3.62837 3.64055 3.73695 3.81876 3.91374 4.00488 4.04475 4.10791 4.12189 4.15828 4.28591 4.29988 4.38002 4.40879 4.54063 4.62051 4.67500 4.78324 4.79527 4.85950 4.87659 4.95971 5.01518 5.01758 5.06587 5.13562 5.16353 5.31502 5.56567 5.58537 5.61450 5.63752 5.79712 5.86669 5.90564 6.05664 6.35587 6.45952 6.59254 6.71513 7.09719 7.17327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.049 4.049 3 Si 0.768 3.232 4 C -0.225 4.225 5 C 0.073 3.927 6 N -0.360 5.360 7 C 0.108 3.892 8 C 0.500 3.500 9 O -0.559 6.559 10 N -0.697 5.697 11 C 0.115 3.885 12 H 0.087 0.913 13 C -0.142 4.142 14 C -0.104 4.104 15 H 0.105 0.895 16 C 0.111 3.889 17 N -0.697 5.697 18 C 0.703 3.297 19 O -0.587 6.587 20 N -0.678 5.678 21 C 0.526 3.474 22 O -0.495 6.495 23 C -0.114 4.114 24 N -0.293 5.293 25 C 0.109 3.891 26 C -0.035 4.035 27 C -0.109 4.109 28 C -0.129 4.129 29 C -0.115 4.115 30 C -0.127 4.127 31 C -0.104 4.104 32 H 0.391 0.609 33 H 0.069 0.931 34 H -0.272 1.272 35 H -0.288 1.288 36 H 0.215 0.785 37 H 0.136 0.864 38 H 0.179 0.821 39 H 0.419 0.581 40 H 0.104 0.896 41 H 0.057 0.943 42 H 0.158 0.842 43 H 0.454 0.546 44 H 0.436 0.564 45 H 0.100 0.900 46 H 0.121 0.879 47 H 0.110 0.890 48 H 0.140 0.860 49 H 0.147 0.853 50 H 0.146 0.854 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.354 6.564 1.249 7.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.157 4.157 3 Si 0.670 3.330 4 C -0.236 4.236 5 C -0.072 4.072 6 N -0.141 5.141 7 C -0.016 4.016 8 C 0.286 3.714 9 O -0.435 6.435 10 N -0.350 5.350 11 C 0.009 3.991 12 H 0.105 0.895 13 C -0.181 4.181 14 C -0.124 4.124 15 H 0.123 0.877 16 C 0.002 3.998 17 N -0.362 5.362 18 C 0.402 3.598 19 O -0.464 6.464 20 N -0.349 5.349 21 C 0.313 3.687 22 O -0.365 6.365 23 C -0.152 4.152 24 N -0.115 5.115 25 C -0.056 4.056 26 C -0.037 4.037 27 C -0.128 4.128 28 C -0.147 4.147 29 C -0.133 4.133 30 C -0.145 4.145 31 C -0.123 4.123 32 H 0.241 0.759 33 H 0.087 0.913 34 H -0.198 1.198 35 H -0.214 1.214 36 H 0.231 0.769 37 H 0.153 0.847 38 H 0.196 0.804 39 H 0.257 0.743 40 H 0.122 0.878 41 H 0.076 0.924 42 H 0.175 0.825 43 H 0.301 0.699 44 H 0.279 0.721 45 H 0.118 0.882 46 H 0.139 0.861 47 H 0.128 0.872 48 H 0.158 0.842 49 H 0.165 0.835 50 H 0.164 0.836 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.772 5.603 0.038 6.755 hybrid contribution -1.481 0.179 0.150 1.500 sum 2.290 5.783 0.188 6.223 Atomic orbital electron populations 1.86526 1.18841 1.80191 1.50754 1.24282 0.83629 1.11775 0.96043 0.94065 0.90212 0.70891 0.77786 1.19602 1.13236 0.91718 0.99047 1.22753 0.98820 0.96614 0.88999 1.48096 1.47959 1.03456 1.14621 1.21994 0.93072 1.05112 0.81429 1.20945 0.85741 0.81911 0.82832 1.90821 1.70634 1.42602 1.39465 1.45446 1.24166 1.49569 1.15869 1.21831 0.85314 0.92389 0.99547 0.89463 1.23455 1.02677 0.97366 0.94613 1.22808 0.98097 0.98303 0.93191 0.87675 1.22277 0.96403 0.89376 0.91719 1.45428 1.52560 1.34168 1.04084 1.15980 0.78668 0.80204 0.84929 1.91078 1.60551 1.54225 1.40518 1.44389 1.47567 1.30044 1.12863 1.21224 0.79709 0.83360 0.84398 1.90884 1.37550 1.25851 1.82256 1.23326 0.99528 1.00915 0.91418 1.77697 1.20213 1.04014 1.09527 1.20892 0.98443 0.93596 0.92710 1.18011 0.96172 0.93080 0.96451 1.21265 0.99620 0.93537 0.98392 1.21337 0.97440 0.99397 0.96525 1.21588 0.94353 0.98060 0.99332 1.21419 1.00809 0.93891 0.98365 1.21690 0.94843 1.00331 0.95402 0.75909 0.91270 1.19793 1.21440 0.76867 0.84654 0.80351 0.74294 0.87805 0.92423 0.82502 0.69863 0.72081 0.88162 0.86089 0.87194 0.84191 0.83531 0.83623 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.29 10.41 -148.98 -1.55 -2.84 16 2 C -0.05 -0.08 2.16 71.24 0.15 0.07 16 3 Si 0.77 -2.55 30.81 68.60 2.11 -0.43 16 4 C -0.22 -1.41 5.38 -19.95 -0.11 -1.52 16 5 C 0.07 0.10 9.96 83.47 0.83 0.93 16 6 N -0.36 -1.45 3.40 -351.93 -1.20 -2.65 16 7 C 0.11 -0.67 6.99 85.63 0.60 -0.07 16 8 C 0.50 -0.40 7.86 87.66 0.69 0.29 16 9 O -0.56 -6.25 15.30 -3.04 -0.05 -6.30 16 10 N -0.70 5.91 5.26 -440.03 -2.32 3.59 16 11 C 0.11 -0.87 4.32 45.52 0.20 -0.67 16 12 H 0.09 -0.18 7.46 -2.39 -0.02 -0.20 16 13 C -0.14 0.96 7.43 31.12 0.23 1.19 16 14 C -0.10 1.24 3.26 -10.27 -0.03 1.21 16 15 H 0.11 -1.27 8.14 -2.39 -0.02 -1.29 16 16 C 0.11 -1.16 3.38 44.37 0.15 -1.01 16 17 N -0.70 6.85 6.15 -459.62 -2.83 4.02 16 18 C 0.70 -0.95 8.99 179.44 1.61 0.66 16 19 O -0.59 -4.78 18.04 -3.86 -0.07 -4.85 16 20 N -0.68 2.27 5.70 -441.12 -2.52 -0.25 16 21 C 0.53 -1.60 8.14 87.94 0.72 -0.89 16 22 O -0.49 -2.25 18.02 -2.89 -0.05 -2.31 16 23 C -0.11 1.70 7.30 31.12 0.23 1.93 16 24 N -0.29 -3.87 11.67 -48.16 -0.56 -4.43 16 25 C 0.11 1.33 6.66 42.53 0.28 1.61 16 26 C -0.04 -0.41 5.74 -20.04 -0.11 -0.53 16 27 C -0.11 -1.21 9.78 22.48 0.22 -0.99 16 28 C -0.13 -0.84 10.03 22.24 0.22 -0.62 16 29 C -0.12 -0.46 10.04 22.31 0.22 -0.24 16 30 C -0.13 -0.59 10.03 22.24 0.22 -0.37 16 31 C -0.10 -0.86 9.05 22.48 0.20 -0.66 16 32 H 0.39 -2.22 8.74 -74.06 -0.65 -2.87 16 33 H 0.07 0.11 7.96 -2.39 -0.02 0.10 16 34 H -0.27 0.10 7.02 99.48 0.70 0.79 16 35 H -0.29 -0.38 7.11 99.48 0.71 0.33 16 36 H 0.21 -1.60 6.37 -2.91 -0.02 -1.62 16 37 H 0.14 -1.32 8.14 -2.39 -0.02 -1.34 16 38 H 0.18 -3.01 8.07 -2.39 -0.02 -3.03 16 39 H 0.42 -6.55 8.70 -92.71 -0.81 -7.35 16 40 H 0.10 -0.77 8.03 -2.38 -0.02 -0.79 16 41 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.16 -2.29 8.05 -2.39 -0.02 -2.31 16 43 H 0.45 -6.41 8.96 -92.71 -0.83 -7.24 16 44 H 0.44 -2.09 8.96 -92.70 -0.83 -2.92 16 45 H 0.10 -1.73 8.14 -2.39 -0.02 -1.75 16 46 H 0.12 -2.12 8.10 -2.39 -0.02 -2.14 16 47 H 0.11 1.44 8.06 -2.92 -0.02 1.41 16 48 H 0.14 0.32 8.06 -2.91 -0.02 0.29 16 49 H 0.15 -0.20 8.06 -2.91 -0.02 -0.22 16 50 H 0.15 -0.07 8.06 -2.91 -0.02 -0.09 16 51 H 0.14 1.11 5.34 -2.91 -0.02 1.09 16 Total: 0.00 -42.82 434.98 -4.53 -47.35 By element: Atomic # 1 Polarization: -29.21 SS G_CDS: -2.03 Total: -31.24 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 6.53 Total: 0.33 kcal Atomic # 7 Polarization: 9.71 SS G_CDS: -9.42 Total: 0.29 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -1.72 Total: -16.29 kcal Atomic # 14 Polarization: -2.55 SS G_CDS: 2.11 Total: -0.43 kcal Total: -42.82 -4.53 -47.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_12622748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.230 kcal (2) G-P(sol) polarization free energy of solvation -42.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds