Wall clock time and date at job start Tue Mar 9 2021 13:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.34714 * 125.66437 * 299.99853 * 4 2 1 6 6 C 1.40963 * 107.02597 * 180.02562 * 5 4 2 7 7 C 1.35931 * 106.74397 * 0.02562 * 6 5 4 8 8 C 1.47819 * 125.93091 * 180.02562 * 7 6 5 9 9 C 1.39804 * 119.99986 * 0.02562 * 8 7 6 10 10 C 1.37820 * 120.24278 * 179.97438 * 9 8 7 11 11 C 1.38772 * 120.24764 * 359.97438 * 10 9 8 12 12 O 1.35645 * 120.00367 * 179.97438 * 11 10 9 13 13 C 1.40245 * 119.99348 * 0.02898 * 11 10 9 14 14 C 1.47569 * 120.12061 * 179.97438 * 13 11 10 15 15 O 1.21582 * 119.99875 * 359.97438 * 14 13 11 16 16 N 1.34776 * 120.00290 * 179.97438 * 14 13 11 17 17 C 1.46493 * 120.00485 * 179.97438 * 16 14 13 18 18 H 1.09008 * 112.84711 * 25.33719 * 17 16 14 19 19 C 1.53777 * 113.61646 * 156.52821 * 17 16 14 20 20 C 1.53776 * 87.08195 * 89.11952 * 19 17 16 21 21 H 1.09000 * 113.61612 * 270.88691 * 20 19 17 22 22 C 1.53001 * 113.61793 * 139.98234 * 20 19 17 23 23 N 1.47303 * 110.60093 * 182.13253 * 22 20 19 24 24 C 1.34525 * 106.62743 * 118.52616 * 23 22 20 25 25 O 1.21530 * 123.77922 * 179.97438 * 24 23 22 26 26 N 1.33797 * 112.45287 * 359.97438 * 24 23 22 27 27 C 1.35119 * 111.68587 * 0.08824 * 26 24 23 28 28 O 1.21240 * 127.33819 * 179.97438 * 27 26 24 29 29 C 1.53779 * 113.61752 * 254.13949 * 17 16 14 30 30 C 1.39218 * 120.00411 * 179.72772 * 8 7 6 31 31 O 1.34336 * 125.66401 * 119.70225 * 4 2 1 32 32 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 33 33 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 34 34 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 35 35 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 36 36 H 1.07996 * 126.48578 * 0.02562 * 5 4 2 37 37 H 1.08005 * 126.62969 * 179.97438 * 6 5 4 38 38 H 1.08001 * 119.88166 * 359.97412 * 9 8 7 39 39 H 1.08001 * 119.87180 * 180.02562 * 10 9 8 40 40 H 0.96704 * 113.99453 * 90.00288 * 12 11 10 41 41 H 0.97012 * 119.99669 * 359.97438 * 16 14 13 42 42 H 1.09004 * 113.61365 * 203.66717 * 19 17 16 43 43 H 1.09000 * 113.61838 * 334.48516 * 19 17 16 44 44 H 1.09000 * 110.53327 * 59.29337 * 22 20 19 45 45 H 0.97006 * 126.68742 * 298.48662 * 23 22 20 46 46 H 0.96997 * 124.17725 * 180.02562 * 26 24 23 47 47 H 1.08998 * 113.61491 * 25.42957 * 29 17 16 48 48 H 1.09004 * 113.61701 * 156.33611 * 29 17 16 49 49 H 1.08006 * 120.11701 * 0.02562 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6773 -1.9928 -1.5557 6 6 2.3354 -2.2473 -2.7760 7 6 2.9615 -1.0942 -3.1311 8 6 3.7783 -0.8894 -4.3460 9 6 3.9602 -1.9391 -5.2513 10 6 4.7203 -1.7535 -6.3858 11 6 5.3104 -0.5232 -6.6384 12 8 6.0579 -0.3461 -7.7563 13 6 5.1347 0.5369 -5.7370 14 6 5.7614 1.8462 -6.0025 15 8 6.4318 2.0074 -7.0039 16 7 5.5905 2.8634 -5.1350 17 6 6.2131 4.1631 -5.3983 18 1 6.3978 4.3370 -6.4584 19 6 5.5106 5.3364 -4.6950 20 6 6.4405 5.0736 -3.4988 21 1 6.0395 4.3554 -2.7835 22 6 6.9595 6.3500 -2.8337 23 7 7.8808 6.0226 -1.7320 24 6 9.0717 6.5591 -2.0538 25 8 10.0621 6.4744 -1.3546 26 7 9.0440 7.1965 -3.2298 27 6 7.8197 7.1414 -3.7989 28 8 7.4791 7.6216 -4.8587 29 6 7.4300 4.4556 -4.5048 30 6 4.3614 0.3506 -4.5919 31 8 2.7023 -0.1686 -2.1878 32 1 -0.3934 0.4418 0.7650 33 1 1.7923 -0.5138 0.8901 34 1 1.5616 2.4678 -1.2086 35 1 1.5878 2.4586 1.2241 36 1 1.0820 -2.6933 -0.9888 37 1 2.3416 -3.1787 -3.3228 38 1 3.5034 -2.8991 -5.0609 39 1 4.8565 -2.5685 -7.0813 40 1 5.5535 -0.0395 -8.5222 41 1 5.0553 2.7349 -4.3362 42 1 5.6806 6.2993 -5.1768 43 1 4.4582 5.1503 -4.4808 44 1 6.1296 6.9573 -2.4722 45 1 7.6698 5.5189 -0.9303 46 1 9.8083 7.6441 -3.6252 47 1 7.9266 3.5581 -4.1359 48 1 8.1238 5.1781 -4.9347 49 1 4.2186 1.1642 -3.8961 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17522896_13259648.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:36:34 Heat of formation + Delta-G solvation = -61.755718 kcal Electronic energy + Delta-G solvation = -39335.785412 eV Core-core repulsion = 34005.977619 eV Total energy + Delta-G solvation = -5329.807793 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 414.140 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.73695 -43.64963 -41.68685 -40.59513 -39.67798 -38.83743 -38.22924 -37.85260 -37.18764 -35.11311 -34.40754 -34.07492 -32.85805 -32.30381 -30.20455 -29.48018 -27.00821 -26.43546 -25.89146 -24.96493 -23.83793 -23.64329 -23.11377 -22.60879 -21.85866 -21.22366 -20.35198 -19.67353 -19.43474 -19.03856 -18.90630 -18.28972 -17.91141 -17.74302 -17.33610 -17.14198 -16.98634 -16.79926 -16.67426 -16.41422 -16.32954 -15.96751 -15.90273 -15.64234 -15.57342 -15.33617 -15.16414 -14.84451 -14.61737 -14.39824 -14.33957 -14.14927 -14.00907 -13.76478 -13.57325 -13.31564 -13.23031 -13.12988 -12.90378 -12.86205 -12.29948 -12.16515 -11.88829 -11.79881 -11.68063 -11.46784 -11.26727 -11.09493 -10.84667 -10.83376 -10.58628 -10.45925 -10.35918 -10.11976 -8.93553 -5.15775 -0.60253 -0.27129 0.45102 0.70586 1.00228 1.28261 1.30262 1.43849 1.60645 1.79818 1.88543 1.91314 1.92955 1.96280 2.58226 2.76761 3.02865 3.09572 3.12309 3.15209 3.32649 3.43257 3.44214 3.53528 3.62185 3.74445 3.82371 3.94001 3.94503 3.98841 4.06083 4.16787 4.20561 4.31984 4.43287 4.52267 4.54153 4.57161 4.68749 4.72649 4.74273 4.77341 4.79880 4.88704 4.96179 4.96731 5.06854 5.11692 5.36908 5.40647 5.44153 5.61631 5.79252 5.96302 6.17568 6.24026 6.35532 6.63560 7.04017 7.14604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.038 4.038 3 Si 0.695 3.305 4 C -0.004 4.004 5 C -0.167 4.167 6 C -0.186 4.186 7 C 0.035 3.965 8 C -0.032 4.032 9 C -0.052 4.052 10 C -0.148 4.148 11 C 0.180 3.820 12 O -0.475 6.475 13 C -0.164 4.164 14 C 0.564 3.436 15 O -0.512 6.512 16 N -0.713 5.713 17 C 0.127 3.873 18 H 0.110 0.890 19 C -0.142 4.142 20 C -0.114 4.114 21 H 0.115 0.885 22 C 0.100 3.900 23 N -0.720 5.720 24 C 0.704 3.296 25 O -0.540 6.540 26 N -0.682 5.682 27 C 0.530 3.470 28 O -0.459 6.459 29 C -0.151 4.151 30 C -0.054 4.054 31 O -0.165 6.165 32 H 0.388 0.612 33 H 0.097 0.903 34 H -0.250 1.250 35 H -0.252 1.252 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.400 0.600 41 H 0.399 0.601 42 H 0.115 0.885 43 H 0.083 0.917 44 H 0.133 0.867 45 H 0.443 0.557 46 H 0.434 0.566 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.053 -1.868 4.179 6.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.147 4.147 3 Si 0.594 3.406 4 C -0.053 4.053 5 C -0.187 4.187 6 C -0.205 4.205 7 C -0.015 4.015 8 C -0.032 4.032 9 C -0.070 4.070 10 C -0.166 4.166 11 C 0.133 3.867 12 O -0.287 6.287 13 C -0.168 4.168 14 C 0.351 3.649 15 O -0.387 6.387 16 N -0.365 5.365 17 C 0.022 3.978 18 H 0.128 0.872 19 C -0.180 4.180 20 C -0.133 4.133 21 H 0.133 0.867 22 C -0.009 4.009 23 N -0.386 5.386 24 C 0.404 3.596 25 O -0.413 6.413 26 N -0.354 5.354 27 C 0.316 3.684 28 O -0.327 6.327 29 C -0.190 4.190 30 C -0.073 4.073 31 O -0.063 6.063 32 H 0.238 0.762 33 H 0.115 0.885 34 H -0.174 1.174 35 H -0.176 1.176 36 H 0.171 0.829 37 H 0.173 0.827 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.259 0.741 41 H 0.235 0.765 42 H 0.133 0.867 43 H 0.102 0.898 44 H 0.150 0.850 45 H 0.287 0.713 46 H 0.277 0.723 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.847 -0.893 3.038 4.982 hybrid contribution -1.603 -0.373 0.974 1.913 sum -5.450 -1.265 4.012 6.885 Atomic orbital electron populations 1.86564 1.16846 1.80379 1.50328 1.23787 0.84927 1.12179 0.93844 0.94690 0.91281 0.73559 0.81074 1.21236 0.98879 0.93093 0.92134 1.21527 1.03161 0.96150 0.97821 1.21854 1.01479 0.98965 0.98233 1.20221 1.02551 0.88089 0.90605 1.17559 0.99135 0.94600 0.91949 1.21137 0.95815 0.98233 0.91854 1.21404 0.98338 0.97751 0.99157 1.18593 0.88750 0.91009 0.88312 1.84753 1.35631 1.88729 1.19594 1.20244 1.03563 0.94660 0.98342 1.17979 0.80427 0.83377 0.83132 1.90850 1.38397 1.82628 1.26816 1.45594 1.53752 1.11066 1.26107 1.21705 0.93058 0.82069 1.00994 0.87213 1.23524 0.99298 1.00069 0.95140 1.22975 0.98558 0.95059 0.96750 0.86728 1.22100 0.94165 0.97643 0.87004 1.45510 1.09683 1.59378 1.23984 1.15845 0.84338 0.78440 0.81025 1.91098 1.33677 1.63033 1.53472 1.44446 1.15368 1.53666 1.21885 1.20787 0.82904 0.78783 0.85922 1.90872 1.76331 1.45387 1.20130 1.23618 0.96943 1.01833 0.96576 1.21279 0.93941 0.96662 0.95376 1.83873 1.55699 1.38860 1.27863 0.76220 0.88549 1.17369 1.17622 0.82853 0.82716 0.84173 0.83612 0.74103 0.76483 0.86658 0.89787 0.85003 0.71257 0.72298 0.90049 0.89316 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.34 12.84 -35.23 -0.45 -0.11 16 2 C -0.04 0.07 2.97 36.01 0.11 0.17 16 3 Si 0.70 -1.86 32.10 -169.99 -5.46 -7.32 16 4 C 0.00 0.00 6.25 -35.56 -0.22 -0.22 16 5 C -0.17 -0.09 10.77 -39.80 -0.43 -0.52 16 6 C -0.19 0.01 10.26 -39.38 -0.40 -0.39 16 7 C 0.04 0.01 7.03 -36.49 -0.26 -0.24 16 8 C -0.03 0.02 5.87 -105.03 -0.62 -0.60 16 9 C -0.05 0.08 9.54 -39.15 -0.37 -0.29 16 10 C -0.15 0.16 9.96 -39.54 -0.39 -0.23 16 11 C 0.18 0.14 6.72 -38.63 -0.26 -0.12 16 12 O -0.48 -0.80 11.55 -40.59 -0.47 -1.26 16 13 C -0.16 -0.10 5.88 -104.90 -0.62 -0.72 16 14 C 0.56 1.00 7.76 -12.45 -0.10 0.90 16 15 O -0.51 -2.76 14.76 -16.66 -0.25 -3.01 16 16 N -0.71 1.00 5.21 -54.05 -0.28 0.72 16 17 C 0.13 -0.16 4.29 -67.12 -0.29 -0.45 16 18 H 0.11 0.11 7.50 -51.92 -0.39 -0.28 16 19 C -0.14 0.50 7.21 -25.92 -0.19 0.31 16 20 C -0.11 0.51 3.85 -89.67 -0.35 0.16 16 21 H 0.11 -0.74 8.14 -51.93 -0.42 -1.16 16 22 C 0.10 -0.41 3.83 -68.21 -0.26 -0.67 16 23 N -0.72 2.48 6.24 -59.20 -0.37 2.11 16 24 C 0.70 0.11 9.00 -88.02 -0.79 -0.68 16 25 O -0.54 -2.45 18.04 5.34 0.10 -2.36 16 26 N -0.68 0.88 5.72 -15.71 -0.09 0.79 16 27 C 0.53 -0.73 5.95 -10.39 -0.06 -0.79 16 28 O -0.46 -0.55 16.16 5.59 0.09 -0.46 16 29 C -0.15 0.26 7.18 -25.78 -0.19 0.08 16 30 C -0.05 0.05 9.20 -38.78 -0.36 -0.31 16 31 O -0.17 -0.09 8.78 4.59 0.04 -0.05 16 32 H 0.39 -1.95 8.74 45.56 0.40 -1.55 16 33 H 0.10 -0.38 7.96 -51.92 -0.41 -0.79 16 34 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 35 H -0.25 0.33 7.11 56.52 0.40 0.73 16 36 H 0.15 -0.09 8.06 -52.49 -0.42 -0.52 16 37 H 0.16 -0.36 7.25 -52.48 -0.38 -0.74 16 38 H 0.14 -0.52 6.96 -52.49 -0.37 -0.89 16 39 H 0.15 -0.41 8.06 -52.49 -0.42 -0.84 16 40 H 0.40 -0.81 9.06 45.56 0.41 -0.40 16 41 H 0.40 -1.59 6.73 -40.81 -0.27 -1.86 16 42 H 0.12 -0.26 6.27 -51.93 -0.33 -0.59 16 43 H 0.08 -0.39 8.14 -51.93 -0.42 -0.81 16 44 H 0.13 -0.81 8.14 -51.93 -0.42 -1.23 16 45 H 0.44 -2.40 8.96 -40.82 -0.37 -2.77 16 46 H 0.43 -1.03 8.96 -40.82 -0.37 -1.40 16 47 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 48 H 0.09 -0.05 6.28 -51.93 -0.33 -0.38 16 49 H 0.14 -0.42 6.24 -52.48 -0.33 -0.74 16 LS Contribution 418.74 15.07 6.31 6.31 Total: 0.00 -14.40 418.74 -11.32 -25.73 By element: Atomic # 1 Polarization: -12.02 SS G_CDS: -4.46 Total: -16.48 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -6.04 Total: -4.60 kcal Atomic # 7 Polarization: 4.37 SS G_CDS: -0.74 Total: 3.63 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.94 Total: -7.26 kcal Atomic # 14 Polarization: -1.86 SS G_CDS: -5.46 Total: -7.32 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -14.40 -11.32 -25.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_13259648.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.031 kcal (2) G-P(sol) polarization free energy of solvation -14.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds