Wall clock time and date at job start Tue Mar 9 2021 13:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.34714 * 125.66437 * 299.99853 * 4 2 1 6 6 C 1.40963 * 107.02597 * 180.02562 * 5 4 2 7 7 C 1.35931 * 106.74397 * 0.02562 * 6 5 4 8 8 C 1.47819 * 125.93091 * 180.02562 * 7 6 5 9 9 C 1.39804 * 119.99986 * 0.02562 * 8 7 6 10 10 C 1.37820 * 120.24278 * 179.97438 * 9 8 7 11 11 C 1.38772 * 120.24764 * 359.97438 * 10 9 8 12 12 O 1.35645 * 120.00367 * 179.97438 * 11 10 9 13 13 C 1.40245 * 119.99348 * 0.02898 * 11 10 9 14 14 C 1.47569 * 120.12061 * 179.97438 * 13 11 10 15 15 O 1.21582 * 119.99875 * 359.97438 * 14 13 11 16 16 N 1.34776 * 120.00290 * 179.97438 * 14 13 11 17 17 C 1.46493 * 120.00485 * 179.97438 * 16 14 13 18 18 H 1.09008 * 112.84711 * 25.33719 * 17 16 14 19 19 C 1.53777 * 113.61646 * 156.52821 * 17 16 14 20 20 C 1.53776 * 87.08195 * 89.11952 * 19 17 16 21 21 H 1.09000 * 113.61612 * 270.88691 * 20 19 17 22 22 C 1.53001 * 113.61793 * 139.98234 * 20 19 17 23 23 N 1.47303 * 110.60093 * 182.13253 * 22 20 19 24 24 C 1.34525 * 106.62743 * 118.52616 * 23 22 20 25 25 O 1.21530 * 123.77922 * 179.97438 * 24 23 22 26 26 N 1.33797 * 112.45287 * 359.97438 * 24 23 22 27 27 C 1.35119 * 111.68587 * 0.08824 * 26 24 23 28 28 O 1.21240 * 127.33819 * 179.97438 * 27 26 24 29 29 C 1.53779 * 113.61752 * 254.13949 * 17 16 14 30 30 C 1.39218 * 120.00411 * 179.72772 * 8 7 6 31 31 O 1.34336 * 125.66401 * 119.70225 * 4 2 1 32 32 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 33 33 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 34 34 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 35 35 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 36 36 H 1.07996 * 126.48578 * 0.02562 * 5 4 2 37 37 H 1.08005 * 126.62969 * 179.97438 * 6 5 4 38 38 H 1.08001 * 119.88166 * 359.97412 * 9 8 7 39 39 H 1.08001 * 119.87180 * 180.02562 * 10 9 8 40 40 H 0.96704 * 113.99453 * 90.00288 * 12 11 10 41 41 H 0.97012 * 119.99669 * 359.97438 * 16 14 13 42 42 H 1.09004 * 113.61365 * 203.66717 * 19 17 16 43 43 H 1.09000 * 113.61838 * 334.48516 * 19 17 16 44 44 H 1.09000 * 110.53327 * 59.29337 * 22 20 19 45 45 H 0.97006 * 126.68742 * 298.48662 * 23 22 20 46 46 H 0.96997 * 124.17725 * 180.02562 * 26 24 23 47 47 H 1.08998 * 113.61491 * 25.42957 * 29 17 16 48 48 H 1.09004 * 113.61701 * 156.33611 * 29 17 16 49 49 H 1.08006 * 120.11701 * 0.02562 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6773 -1.9928 -1.5557 6 6 2.3354 -2.2473 -2.7760 7 6 2.9615 -1.0942 -3.1311 8 6 3.7783 -0.8894 -4.3460 9 6 3.9602 -1.9391 -5.2513 10 6 4.7203 -1.7535 -6.3858 11 6 5.3104 -0.5232 -6.6384 12 8 6.0579 -0.3461 -7.7563 13 6 5.1347 0.5369 -5.7370 14 6 5.7614 1.8462 -6.0025 15 8 6.4318 2.0074 -7.0039 16 7 5.5905 2.8634 -5.1350 17 6 6.2131 4.1631 -5.3983 18 1 6.3978 4.3370 -6.4584 19 6 5.5106 5.3364 -4.6950 20 6 6.4405 5.0736 -3.4988 21 1 6.0395 4.3554 -2.7835 22 6 6.9595 6.3500 -2.8337 23 7 7.8808 6.0226 -1.7320 24 6 9.0717 6.5591 -2.0538 25 8 10.0621 6.4744 -1.3546 26 7 9.0440 7.1965 -3.2298 27 6 7.8197 7.1414 -3.7989 28 8 7.4791 7.6216 -4.8587 29 6 7.4300 4.4556 -4.5048 30 6 4.3614 0.3506 -4.5919 31 8 2.7023 -0.1686 -2.1878 32 1 -0.3934 0.4418 0.7650 33 1 1.7923 -0.5138 0.8901 34 1 1.5616 2.4678 -1.2086 35 1 1.5878 2.4586 1.2241 36 1 1.0820 -2.6933 -0.9888 37 1 2.3416 -3.1787 -3.3228 38 1 3.5034 -2.8991 -5.0609 39 1 4.8565 -2.5685 -7.0813 40 1 5.5535 -0.0395 -8.5222 41 1 5.0553 2.7349 -4.3362 42 1 5.6806 6.2993 -5.1768 43 1 4.4582 5.1503 -4.4808 44 1 6.1296 6.9573 -2.4722 45 1 7.6698 5.5189 -0.9303 46 1 9.8083 7.6441 -3.6252 47 1 7.9266 3.5581 -4.1359 48 1 8.1238 5.1781 -4.9347 49 1 4.2186 1.1642 -3.8961 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17522896_13259648.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:36:33 Heat of formation + Delta-G solvation = -71.238206 kcal Electronic energy + Delta-G solvation = -39336.196603 eV Core-core repulsion = 34005.977619 eV Total energy + Delta-G solvation = -5330.218984 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 414.140 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.67031 -43.55612 -41.68809 -40.52251 -39.70019 -38.84679 -38.10901 -37.81200 -37.23675 -35.07517 -34.35686 -34.02458 -32.79240 -32.21186 -30.11017 -29.34020 -26.84201 -26.33047 -25.82341 -24.86220 -23.75725 -23.55409 -23.05262 -22.52179 -21.81531 -21.18103 -20.25424 -19.60782 -19.38591 -18.99875 -18.75373 -18.19527 -17.86107 -17.67633 -17.27020 -17.06928 -16.92114 -16.69772 -16.65615 -16.33913 -16.26521 -15.94725 -15.80536 -15.62297 -15.52931 -15.32851 -15.03626 -14.74924 -14.50092 -14.31684 -14.25549 -14.02261 -13.93785 -13.66293 -13.49087 -13.19953 -13.13962 -13.06681 -12.75853 -12.74548 -12.34109 -12.05869 -11.90056 -11.65218 -11.60727 -11.49121 -11.18666 -11.04475 -10.93614 -10.69925 -10.45069 -10.39217 -10.29849 -10.06333 -8.87408 -4.92065 -0.54945 -0.19446 0.52571 0.77152 1.20554 1.41924 1.43103 1.51815 1.74847 1.86771 1.93906 1.96359 1.98445 2.15539 2.63523 2.91616 3.11762 3.22163 3.32624 3.36607 3.43965 3.59563 3.63710 3.68439 3.76265 3.86105 4.03703 4.05806 4.08883 4.20856 4.27921 4.33236 4.39533 4.43294 4.58960 4.65403 4.68074 4.70059 4.77356 4.83210 4.90070 4.90121 4.96834 5.01370 5.04213 5.12920 5.16435 5.22794 5.46013 5.51205 5.52342 5.81882 5.89428 6.02005 6.37463 6.41533 6.53982 6.72645 7.11837 7.12487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.051 4.051 3 Si 0.775 3.225 4 C -0.016 4.016 5 C -0.186 4.186 6 C -0.191 4.191 7 C 0.024 3.976 8 C -0.040 4.040 9 C -0.045 4.045 10 C -0.147 4.147 11 C 0.162 3.838 12 O -0.496 6.496 13 C -0.178 4.178 14 C 0.559 3.441 15 O -0.559 6.559 16 N -0.695 5.695 17 C 0.118 3.882 18 H 0.079 0.921 19 C -0.129 4.129 20 C -0.096 4.096 21 H 0.149 0.851 22 C 0.108 3.892 23 N -0.699 5.699 24 C 0.702 3.298 25 O -0.589 6.589 26 N -0.682 5.682 27 C 0.527 3.473 28 O -0.487 6.487 29 C -0.156 4.156 30 C -0.048 4.048 31 O -0.170 6.170 32 H 0.405 0.595 33 H 0.122 0.878 34 H -0.297 1.297 35 H -0.268 1.268 36 H 0.160 0.840 37 H 0.174 0.826 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.410 0.590 41 H 0.415 0.585 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.168 0.832 45 H 0.455 0.545 46 H 0.436 0.564 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 -2.614 6.217 9.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.159 4.159 3 Si 0.677 3.323 4 C -0.065 4.065 5 C -0.205 4.205 6 C -0.210 4.210 7 C -0.025 4.025 8 C -0.040 4.040 9 C -0.063 4.063 10 C -0.166 4.166 11 C 0.116 3.884 12 O -0.309 6.309 13 C -0.182 4.182 14 C 0.347 3.653 15 O -0.438 6.438 16 N -0.348 5.348 17 C 0.012 3.988 18 H 0.097 0.903 19 C -0.167 4.167 20 C -0.115 4.115 21 H 0.167 0.833 22 C 0.000 4.000 23 N -0.365 5.365 24 C 0.401 3.599 25 O -0.466 6.466 26 N -0.352 5.352 27 C 0.315 3.685 28 O -0.358 6.358 29 C -0.195 4.195 30 C -0.066 4.066 31 O -0.068 6.068 32 H 0.257 0.743 33 H 0.139 0.861 34 H -0.224 1.224 35 H -0.194 1.194 36 H 0.177 0.823 37 H 0.192 0.808 38 H 0.181 0.819 39 H 0.180 0.820 40 H 0.271 0.729 41 H 0.253 0.747 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.185 0.815 45 H 0.302 0.698 46 H 0.278 0.722 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.668 -1.654 5.135 7.825 hybrid contribution -1.118 -0.158 0.287 1.165 sum -6.787 -1.812 5.422 8.873 Atomic orbital electron populations 1.86511 1.17545 1.80984 1.51735 1.24124 0.84588 1.13330 0.93837 0.93778 0.90004 0.71073 0.77411 1.21707 0.98725 0.93484 0.92597 1.21776 1.03703 0.96593 0.98415 1.22152 1.00976 0.99656 0.98176 1.20389 1.02969 0.88322 0.90846 1.17676 0.99293 0.95025 0.92041 1.21417 0.94936 0.98946 0.91020 1.21559 0.97964 0.97385 0.99656 1.18905 0.89306 0.91975 0.88245 1.84709 1.36842 1.88936 1.20450 1.20216 1.04576 0.94149 0.99233 1.18271 0.79899 0.84253 0.82836 1.90822 1.40692 1.83448 1.28849 1.45439 1.53066 1.10306 1.25961 1.21717 0.94349 0.82993 0.99711 0.90319 1.23415 1.00490 0.98168 0.94661 1.23005 0.96776 0.95130 0.96577 0.83329 1.22244 0.94120 0.97721 0.85926 1.45448 1.08427 1.58282 1.24322 1.15987 0.84604 0.78438 0.80821 1.91065 1.35564 1.65028 1.54922 1.44482 1.15824 1.53305 1.21619 1.21247 0.83014 0.78459 0.85825 1.90864 1.76751 1.46727 1.21455 1.23585 0.96918 1.01378 0.97574 1.21425 0.92991 0.97299 0.94933 1.83858 1.55864 1.39078 1.28007 0.74282 0.86090 1.22441 1.19369 0.82272 0.80836 0.81850 0.82026 0.72941 0.74673 0.87775 0.87602 0.81480 0.69775 0.72182 0.90931 0.90948 0.82774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.20 12.84 -148.98 -1.91 -0.71 16 2 C -0.05 0.24 2.97 71.24 0.21 0.45 16 3 Si 0.77 -5.20 32.10 68.60 2.20 -3.00 16 4 C -0.02 0.00 6.25 24.88 0.16 0.15 16 5 C -0.19 -0.06 10.77 22.13 0.24 0.18 16 6 C -0.19 0.23 10.26 22.40 0.23 0.46 16 7 C 0.02 -0.01 7.03 24.27 0.17 0.16 16 8 C -0.04 0.07 5.87 -20.13 -0.12 -0.04 16 9 C -0.05 0.19 9.54 22.55 0.22 0.41 16 10 C -0.15 0.37 9.96 22.30 0.22 0.59 16 11 C 0.16 0.41 6.72 22.89 0.15 0.56 16 12 O -0.50 -2.58 11.55 -68.61 -0.79 -3.37 16 13 C -0.18 -0.33 5.88 -20.04 -0.12 -0.45 16 14 C 0.56 2.76 7.76 86.71 0.67 3.43 16 15 O -0.56 -7.56 14.76 17.01 0.25 -7.31 16 16 N -0.69 1.80 5.21 -443.19 -2.31 -0.51 16 17 C 0.12 -0.19 4.29 45.52 0.20 0.00 16 18 H 0.08 0.39 7.50 -2.38 -0.02 0.37 16 19 C -0.13 1.03 7.21 31.12 0.22 1.26 16 20 C -0.10 1.02 3.85 -10.18 -0.04 0.98 16 21 H 0.15 -2.48 8.14 -2.39 -0.02 -2.50 16 22 C 0.11 -1.08 3.83 44.38 0.17 -0.91 16 23 N -0.70 5.78 6.24 -459.62 -2.87 2.91 16 24 C 0.70 0.42 9.00 179.44 1.61 2.03 16 25 O -0.59 -6.00 18.04 -3.81 -0.07 -6.07 16 26 N -0.68 1.20 5.72 -440.66 -2.52 -1.32 16 27 C 0.53 -1.36 5.95 87.89 0.52 -0.83 16 28 O -0.49 -1.61 16.16 -2.90 -0.05 -1.66 16 29 C -0.16 0.45 7.18 31.21 0.22 0.68 16 30 C -0.05 0.11 9.20 22.79 0.21 0.32 16 31 O -0.17 -0.03 8.78 -6.50 -0.06 -0.08 16 32 H 0.40 -4.48 8.74 -74.06 -0.65 -5.12 16 33 H 0.12 -1.20 7.96 -2.38 -0.02 -1.22 16 34 H -0.30 -0.36 7.11 99.48 0.71 0.34 16 35 H -0.27 1.12 7.11 99.48 0.71 1.83 16 36 H 0.16 -0.29 8.06 -2.91 -0.02 -0.31 16 37 H 0.17 -1.09 7.25 -2.91 -0.02 -1.11 16 38 H 0.16 -1.54 6.96 -2.91 -0.02 -1.56 16 39 H 0.16 -1.01 8.06 -2.91 -0.02 -1.04 16 40 H 0.41 -0.72 9.06 -74.05 -0.67 -1.40 16 41 H 0.41 -3.82 6.73 -92.70 -0.62 -4.44 16 42 H 0.10 -0.49 6.27 -2.39 -0.01 -0.50 16 43 H 0.11 -1.25 8.14 -2.39 -0.02 -1.27 16 44 H 0.17 -2.64 8.14 -2.39 -0.02 -2.66 16 45 H 0.45 -5.88 8.96 -92.70 -0.83 -6.71 16 46 H 0.44 -1.36 8.96 -92.71 -0.83 -2.19 16 47 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 48 H 0.07 0.05 6.28 -2.38 -0.01 0.03 16 49 H 0.15 -1.15 6.24 -2.91 -0.02 -1.17 16 Total: 0.00 -37.01 418.74 -5.41 -42.42 By element: Atomic # 1 Polarization: -28.28 SS G_CDS: -2.44 Total: -30.72 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 5.16 Total: 9.42 kcal Atomic # 7 Polarization: 8.78 SS G_CDS: -7.70 Total: 1.08 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -2.63 Total: -19.21 kcal Atomic # 14 Polarization: -5.20 SS G_CDS: 2.20 Total: -3.00 kcal Total: -37.01 -5.41 -42.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_13259648.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.819 kcal (2) G-P(sol) polarization free energy of solvation -37.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds