Wall clock time and date at job start Tue Mar 9 2021 13:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86299 * 109.47279 * 2 1 4 4 C 1.50705 * 109.47055 * 240.00495 * 2 1 3 5 5 C 1.38239 * 119.97314 * 119.99822 * 4 2 1 6 6 C 1.38291 * 120.11178 * 179.97438 * 5 4 2 7 7 C 1.38131 * 120.05500 * 0.04016 * 6 5 4 8 8 C 1.38752 * 119.94206 * 359.97438 * 7 6 5 9 9 O 1.35899 * 120.05305 * 180.02562 * 8 7 6 10 10 C 1.42895 * 117.00109 * 359.97438 * 9 8 7 11 11 C 1.52997 * 109.47137 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.47187 * 180.02562 * 11 10 9 13 13 O 1.21279 * 119.99854 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99931 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00354 * 180.02562 * 14 12 11 16 16 H 1.09005 * 112.84764 * 23.79875 * 15 14 12 17 17 C 1.53772 * 113.62001 * 154.99759 * 15 14 12 18 18 C 1.53784 * 87.08274 * 89.11805 * 17 15 14 19 19 H 1.09004 * 113.60985 * 270.79995 * 18 17 15 20 20 C 1.52997 * 113.61394 * 139.98262 * 18 17 15 21 21 N 1.47317 * 110.59824 * 180.02562 * 20 18 17 22 22 C 1.34527 * 106.61579 * 241.70024 * 21 20 18 23 23 O 1.21542 * 123.76861 * 179.76750 * 22 21 20 24 24 N 1.33785 * 112.46096 * 359.60545 * 22 21 20 25 25 C 1.34771 * 111.64603 * 0.41435 * 24 22 21 26 26 O 1.21225 * 127.16082 * 179.72976 * 25 24 22 27 27 C 1.53778 * 87.07838 * 25.43212 * 18 17 15 28 28 C 1.38164 * 119.96970 * 300.29658 * 4 2 1 29 29 H 0.96704 * 114.00321 * 59.99538 * 1 2 3 30 30 H 1.08994 * 109.47433 * 119.99964 * 2 1 3 31 31 H 1.48500 * 110.00096 * 298.68627 * 3 2 1 32 32 H 1.48504 * 109.99756 * 60.00099 * 3 2 1 33 33 H 1.08002 * 119.94713 * 0.02562 * 5 4 2 34 34 H 1.08001 * 119.97215 * 180.02562 * 6 5 4 35 35 H 1.07997 * 120.02784 * 179.97438 * 7 6 5 36 36 H 1.09001 * 109.47219 * 60.00183 * 10 9 8 37 37 H 1.09004 * 109.47101 * 299.99772 * 10 9 8 38 38 H 1.08996 * 109.47518 * 59.99571 * 11 10 9 39 39 H 1.09000 * 109.47415 * 299.99610 * 11 10 9 40 40 H 0.97007 * 120.00489 * 359.97438 * 14 12 11 41 41 H 1.09005 * 113.61593 * 334.56891 * 17 15 14 42 42 H 1.09005 * 113.61591 * 203.66545 * 17 15 14 43 43 H 1.08998 * 110.53647 * 302.82831 * 20 18 17 44 44 H 0.97001 * 126.68790 * 61.42942 * 21 20 18 45 45 H 0.97002 * 124.18257 * 180.13665 * 24 22 21 46 46 H 1.09007 * 113.61396 * 89.12292 * 27 18 17 47 47 H 1.09000 * 113.61152 * 220.01871 * 27 18 17 48 48 H 1.08001 * 120.03219 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.7260 -0.0379 -2.1401 6 6 3.1889 -0.6871 -3.2700 7 6 2.8575 -2.0094 -3.4928 8 6 2.0597 -2.6864 -2.5815 9 8 1.7326 -3.9875 -2.7982 10 6 2.2445 -4.5960 -3.9855 11 6 1.7737 -6.0500 -4.0570 12 6 2.3140 -6.6920 -5.3089 13 8 3.0069 -6.0496 -6.0692 14 7 2.0263 -7.9796 -5.5840 15 6 2.5519 -8.6039 -6.8006 16 1 3.4514 -8.1137 -7.1732 17 6 2.6795 -10.1332 -6.7026 18 6 1.2348 -10.2084 -7.2244 19 1 0.4837 -10.1841 -6.4348 20 6 1.0042 -11.3387 -8.2293 21 7 -0.3968 -11.3495 -8.6848 22 6 -0.9138 -12.5338 -8.3110 23 8 -2.0614 -12.8692 -8.5295 24 7 -0.0227 -13.3026 -7.6749 25 6 1.1718 -12.6890 -7.5611 26 8 2.1721 -13.1257 -7.0334 27 6 1.4845 -8.8409 -7.8819 28 6 1.5921 -2.0313 -1.4518 29 1 -0.3934 0.4418 -0.7650 30 1 1.7923 -0.5138 0.8899 31 1 1.5878 2.4586 -1.2242 32 1 1.5615 2.4678 1.2086 33 1 2.9864 0.9960 -1.9677 34 1 3.8100 -0.1597 -3.9789 35 1 3.2189 -2.5158 -4.3756 36 1 3.3339 -4.5669 -3.9681 37 1 1.8804 -4.0533 -4.8579 38 1 0.6843 -6.0788 -4.0746 39 1 2.1374 -6.5931 -3.1847 40 1 1.4718 -8.4933 -4.9760 41 1 2.7945 -10.4973 -5.6816 42 1 3.4140 -10.5550 -7.3888 43 1 1.6820 -11.2407 -9.0773 44 1 -0.8577 -10.6392 -9.1581 45 1 -0.2138 -14.1904 -7.3339 46 1 1.8923 -8.9093 -8.8905 47 1 0.6348 -8.1616 -7.8130 48 1 0.9669 -2.5547 -0.7436 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17522896_4549614.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:37:54 Heat of formation + Delta-G solvation = -98.123039 kcal Electronic energy + Delta-G solvation = -32576.969809 eV Core-core repulsion = 27793.408006 eV Total energy + Delta-G solvation = -4783.561803 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.45041 -41.48994 -41.11191 -39.88399 -39.45002 -39.02852 -37.39236 -37.24442 -35.05644 -34.12817 -33.11684 -32.47895 -30.85367 -29.40643 -27.07981 -26.74392 -25.85680 -24.67567 -23.70633 -23.67396 -22.53273 -22.22065 -21.50900 -20.44120 -19.48089 -19.35093 -18.28225 -17.92616 -17.87308 -17.56674 -17.49303 -17.15713 -17.07003 -17.00297 -16.74500 -16.46016 -16.25985 -16.00019 -15.93483 -15.52105 -15.48795 -15.20235 -14.91966 -14.70853 -14.43846 -14.15548 -14.11788 -13.97122 -13.45149 -13.37933 -13.22235 -12.93267 -12.85831 -12.60175 -12.39628 -12.31903 -11.99694 -11.81637 -11.75099 -11.63295 -11.57991 -11.51091 -11.10258 -11.05071 -10.68376 -10.49570 -10.10922 -9.93723 -9.27724 -4.90156 0.19443 0.38997 0.52294 1.29809 1.39818 1.50218 1.62434 1.69443 1.92015 1.96885 2.15859 2.47386 2.65800 2.83254 3.38226 3.40437 3.54777 3.59318 3.63362 3.66842 3.83387 3.85471 3.88573 3.90680 3.97871 4.09771 4.23469 4.28206 4.31603 4.38790 4.39706 4.55605 4.62146 4.66887 4.68596 4.76257 4.80696 4.87937 4.96185 4.98073 5.02687 5.05779 5.15558 5.25797 5.37756 5.43712 5.57062 5.70111 5.77956 5.86716 6.32683 6.36653 6.44054 6.46806 7.08521 7.14163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.087 4.087 3 Si 0.775 3.225 4 C -0.082 4.082 5 C -0.157 4.157 6 C -0.075 4.075 7 C -0.210 4.210 8 C 0.117 3.883 9 O -0.325 6.325 10 C 0.074 3.926 11 C -0.135 4.135 12 C 0.525 3.475 13 O -0.579 6.579 14 N -0.700 5.700 15 C 0.110 3.890 16 H 0.092 0.908 17 C -0.125 4.125 18 C -0.107 4.107 19 H 0.107 0.893 20 C 0.109 3.891 21 N -0.703 5.703 22 C 0.702 3.298 23 O -0.589 6.589 24 N -0.677 5.677 25 C 0.530 3.470 26 O -0.487 6.487 27 C -0.131 4.131 28 C -0.142 4.142 29 H 0.386 0.614 30 H 0.125 0.875 31 H -0.281 1.281 32 H -0.303 1.303 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.138 0.862 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.416 0.584 41 H 0.078 0.922 42 H 0.111 0.889 43 H 0.159 0.841 44 H 0.452 0.548 45 H 0.437 0.563 46 H 0.114 0.886 47 H 0.077 0.923 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 0.779 -1.656 3.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.195 4.195 3 Si 0.680 3.320 4 C -0.083 4.083 5 C -0.174 4.174 6 C -0.093 4.093 7 C -0.229 4.229 8 C 0.071 3.929 9 O -0.239 6.239 10 C -0.002 4.002 11 C -0.174 4.174 12 C 0.312 3.688 13 O -0.459 6.459 14 N -0.352 5.352 15 C 0.005 3.995 16 H 0.110 0.890 17 C -0.164 4.164 18 C -0.126 4.126 19 H 0.125 0.875 20 C 0.001 3.999 21 N -0.367 5.367 22 C 0.401 3.599 23 O -0.466 6.466 24 N -0.348 5.348 25 C 0.316 3.684 26 O -0.357 6.357 27 C -0.169 4.169 28 C -0.160 4.160 29 H 0.235 0.765 30 H 0.143 0.857 31 H -0.208 1.208 32 H -0.231 1.231 33 H 0.165 0.835 34 H 0.171 0.829 35 H 0.155 0.845 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.254 0.746 41 H 0.097 0.903 42 H 0.129 0.871 43 H 0.177 0.823 44 H 0.298 0.702 45 H 0.280 0.720 46 H 0.132 0.868 47 H 0.095 0.905 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.611 1.253 -1.403 4.072 hybrid contribution -1.723 -0.830 -0.403 1.954 sum 1.889 0.424 -1.807 2.648 Atomic orbital electron populations 1.86570 1.18476 1.80460 1.50146 1.25346 0.83503 1.12247 0.98401 0.93910 0.90304 0.71365 0.76394 1.20166 0.97694 0.93531 0.96874 1.21173 1.00287 1.00853 0.95122 1.21255 0.97599 0.93415 0.97037 1.21559 1.03101 0.97068 1.01148 1.19139 0.95264 0.83508 0.94943 1.85953 1.71449 1.22792 1.43749 1.22448 0.99026 0.93183 0.85501 1.21447 1.04858 0.94033 0.97089 1.20533 0.79318 0.82133 0.86809 1.90742 1.39970 1.63573 1.51569 1.45561 1.53151 1.11523 1.24975 1.21892 0.97981 0.93922 0.85717 0.89005 1.23303 0.95950 0.93655 1.03486 1.22855 0.98995 0.93152 0.97601 0.87508 1.22324 0.85155 0.92629 0.99787 1.45499 1.12676 1.17553 1.61005 1.15999 0.83648 0.82108 0.78105 1.91073 1.17711 1.76353 1.61476 1.44353 1.13427 1.21514 1.55497 1.21104 0.81847 0.87652 0.77774 1.90873 1.31146 1.71434 1.42263 1.23469 0.99309 0.94650 0.99521 1.20312 1.03711 0.94671 0.97347 0.76455 0.85684 1.20786 1.23094 0.83484 0.82912 0.84451 0.91531 0.91641 0.85709 0.85727 0.74643 0.90285 0.87070 0.82346 0.70152 0.71985 0.86812 0.90463 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.93 12.76 -148.98 -1.90 -3.83 16 2 C -0.09 -0.02 2.82 71.24 0.20 0.18 16 3 Si 0.78 -1.55 29.79 68.60 2.04 0.49 16 4 C -0.08 -0.13 5.39 -19.88 -0.11 -0.24 16 5 C -0.16 0.11 8.67 22.28 0.19 0.30 16 6 C -0.08 0.04 10.04 22.26 0.22 0.26 16 7 C -0.21 -0.46 9.04 22.37 0.20 -0.26 16 8 C 0.12 0.54 6.69 22.51 0.15 0.69 16 9 O -0.33 -1.21 10.14 -92.41 -0.94 -2.15 16 10 C 0.07 0.00 4.03 71.98 0.29 0.29 16 11 C -0.13 0.75 6.07 29.85 0.18 0.93 16 12 C 0.52 -1.08 7.83 87.66 0.69 -0.39 16 13 O -0.58 -3.86 15.58 -3.03 -0.05 -3.91 16 14 N -0.70 5.33 5.26 -440.05 -2.32 3.02 16 15 C 0.11 -0.83 4.32 45.51 0.20 -0.64 16 16 H 0.09 -0.27 7.47 -2.38 -0.02 -0.29 16 17 C -0.13 1.24 6.65 31.12 0.21 1.45 16 18 C -0.11 1.26 3.36 -10.27 -0.03 1.23 16 19 H 0.11 -1.28 8.14 -2.39 -0.02 -1.30 16 20 C 0.11 -1.17 3.44 44.37 0.15 -1.02 16 21 N -0.70 5.99 6.24 -459.60 -2.87 3.12 16 22 C 0.70 -0.51 8.99 179.44 1.61 1.11 16 23 O -0.59 -5.36 18.04 -3.85 -0.07 -5.43 16 24 N -0.68 2.60 5.70 -441.13 -2.52 0.08 16 25 C 0.53 -2.41 8.00 87.94 0.70 -1.71 16 26 O -0.49 -0.70 17.48 -2.86 -0.05 -0.75 16 27 C -0.13 1.49 7.44 31.12 0.23 1.72 16 28 C -0.14 -0.63 9.55 22.37 0.21 -0.42 16 29 H 0.39 -0.80 8.70 -74.05 -0.64 -1.45 16 30 H 0.13 -0.15 7.96 -2.39 -0.02 -0.17 16 31 H -0.28 -0.44 7.11 99.48 0.71 0.27 16 32 H -0.30 -1.71 7.11 99.48 0.71 -1.01 16 33 H 0.15 -0.75 4.87 -2.91 -0.01 -0.77 16 34 H 0.15 -0.83 8.06 -2.91 -0.02 -0.86 16 35 H 0.14 0.06 6.30 -2.91 -0.02 0.05 16 36 H 0.07 0.07 7.62 -2.39 -0.02 0.06 16 37 H 0.07 0.07 7.62 -2.38 -0.02 0.06 16 38 H 0.12 -1.11 8.14 -2.39 -0.02 -1.12 16 39 H 0.12 -1.08 8.14 -2.39 -0.02 -1.10 16 40 H 0.42 -5.29 8.70 -92.70 -0.81 -6.09 16 41 H 0.08 -0.66 8.14 -2.38 -0.02 -0.68 16 42 H 0.11 -1.14 8.10 -2.38 -0.02 -1.16 16 43 H 0.16 -2.40 8.05 -2.39 -0.02 -2.42 16 44 H 0.45 -5.32 8.96 -92.71 -0.83 -6.15 16 45 H 0.44 -2.39 8.96 -92.71 -0.83 -3.22 16 46 H 0.11 -1.56 8.03 -2.38 -0.02 -1.58 16 47 H 0.08 -0.77 8.14 -2.39 -0.02 -0.79 16 48 H 0.13 0.64 8.06 -2.91 -0.02 0.62 16 Total: 0.00 -29.65 405.71 -5.36 -35.01 By element: Atomic # 1 Polarization: -27.12 SS G_CDS: -2.01 Total: -29.13 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 5.30 Total: 3.48 kcal Atomic # 7 Polarization: 13.93 SS G_CDS: -7.70 Total: 6.23 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -3.00 Total: -16.08 kcal Atomic # 14 Polarization: -1.55 SS G_CDS: 2.04 Total: 0.49 kcal Total: -29.65 -5.36 -35.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_4549614.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.113 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds