Wall clock time and date at job start Tue Mar 9 2021 13:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42891 * 1 3 3 Si 1.86303 * 109.47505 * 2 1 4 4 C 1.50707 * 109.47522 * 239.99839 * 2 1 3 5 5 C 1.38239 * 119.94241 * 119.99631 * 4 2 1 6 6 C 1.38170 * 120.05181 * 180.02562 * 5 4 2 7 7 C 1.38705 * 119.94752 * 0.02562 * 6 5 4 8 8 O 1.35898 * 120.06154 * 180.02562 * 7 6 5 9 9 C 1.42902 * 116.99694 * 359.97438 * 8 7 6 10 10 C 1.50703 * 109.47357 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99733 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00010 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00122 * 180.02562 * 12 10 9 14 14 H 1.09008 * 112.84825 * 25.32393 * 13 12 10 15 15 C 1.53770 * 113.62111 * 156.52889 * 13 12 10 16 16 C 1.53784 * 87.08462 * 89.11252 * 15 13 12 17 17 H 1.08999 * 113.61582 * 270.88996 * 16 15 13 18 18 C 1.52999 * 113.61303 * 139.97944 * 16 15 13 19 19 N 1.47312 * 110.59664 * 182.12976 * 18 16 15 20 20 C 1.34531 * 106.61544 * 118.53099 * 19 18 16 21 21 O 1.21538 * 123.76861 * 179.97438 * 20 19 18 22 22 N 1.33793 * 112.45863 * 0.02562 * 20 19 18 23 23 C 1.35116 * 111.68407 * 0.08688 * 22 20 19 24 24 O 1.21239 * 127.33408 * 179.97438 * 23 22 20 25 25 C 1.53784 * 113.61589 * 254.13796 * 13 12 10 26 26 C 1.38755 * 119.88580 * 0.02562 * 7 6 5 27 27 N 1.48006 * 120.02880 * 179.72637 * 26 7 6 28 28 O 1.21792 * 120.00520 * 179.97438 * 27 26 7 29 29 O 1.21806 * 119.99772 * 359.97438 * 27 26 7 30 30 C 1.38121 * 119.94685 * 359.97438 * 26 7 6 31 31 H 0.96710 * 113.99986 * 59.99832 * 1 2 3 32 32 H 1.09003 * 109.47380 * 120.00108 * 2 1 3 33 33 H 1.48499 * 109.99656 * 59.99876 * 3 2 1 34 34 H 1.48500 * 110.00280 * 181.31701 * 3 2 1 35 35 H 1.07993 * 119.97616 * 359.97438 * 5 4 2 36 36 H 1.08006 * 120.02503 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.47292 * 300.00273 * 9 8 7 38 38 H 1.08998 * 109.47042 * 60.00021 * 9 8 7 39 39 H 0.96998 * 120.00276 * 359.97438 * 12 10 9 40 40 H 1.09003 * 113.61836 * 203.66660 * 15 13 12 41 41 H 1.09004 * 113.61185 * 334.56365 * 15 13 12 42 42 H 1.09004 * 110.52951 * 59.30643 * 18 16 15 43 43 H 0.96995 * 126.69275 * 298.56529 * 19 18 16 44 44 H 0.96997 * 124.17766 * 180.02562 * 22 20 19 45 45 H 1.09001 * 113.61155 * 25.42720 * 25 13 12 46 46 H 1.08996 * 113.62064 * 156.33066 * 25 13 12 47 47 H 1.08001 * 119.97514 * 179.97438 * 30 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2305 5 6 2.7260 -0.0375 -2.1396 6 6 3.1875 -0.6865 -3.2688 7 6 2.8524 -2.0141 -3.4899 8 8 3.3054 -2.6549 -4.5995 9 6 4.1223 -1.8998 -5.4965 10 6 4.5268 -2.7685 -6.6597 11 8 4.1527 -3.9208 -6.7148 12 7 5.3050 -2.2650 -7.6381 13 6 5.6977 -3.1093 -8.7691 14 1 4.9956 -3.9223 -8.9543 15 6 6.0666 -2.3142 -10.0326 16 6 7.5060 -2.2755 -9.4928 17 1 7.7082 -1.4194 -8.8491 18 6 8.5712 -2.4731 -10.5732 19 7 9.9188 -2.4751 -9.9781 20 6 10.4527 -3.6821 -10.2388 21 8 11.5658 -4.0189 -9.8858 22 7 9.6218 -4.4698 -10.9311 23 6 8.4510 -3.8497 -11.1963 24 8 7.5019 -4.2987 -11.8025 25 6 7.1661 -3.5631 -8.7184 26 6 2.0537 -2.6870 -2.5763 27 7 1.6892 -4.1020 -2.8122 28 8 0.9886 -4.6923 -2.0098 29 8 2.0900 -4.6761 -3.8090 30 6 1.5949 -2.0338 -1.4491 31 1 -0.3934 0.4418 -0.7651 32 1 1.7923 -0.5139 0.8900 33 1 1.5615 2.4678 1.2085 34 1 3.5346 1.7702 -0.0321 35 1 2.9857 0.9966 -1.9677 36 1 3.8080 -0.1601 -3.9790 37 1 3.5610 -1.0404 -5.8632 38 1 5.0139 -1.5548 -4.9729 39 1 5.6044 -1.3435 -7.5938 40 1 5.9611 -2.8859 -10.9546 41 1 5.5934 -1.3336 -10.0850 42 1 8.4900 -1.6989 -11.3362 43 1 10.3390 -1.7481 -9.4925 44 1 9.8339 -5.3744 -11.2093 45 1 7.5802 -3.5903 -7.7105 46 1 7.3609 -4.4757 -9.2817 47 1 0.9729 -2.5570 -0.7379 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17522896_4549638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:38:24 Heat of formation + Delta-G solvation = -70.700986 kcal Electronic energy + Delta-G solvation = -38013.127346 eV Core-core repulsion = 32555.275836 eV Total energy + Delta-G solvation = -5457.851510 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 407.134 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.71678 -43.05308 -41.85645 -41.23776 -40.16900 -39.64470 -38.97981 -37.56913 -37.25899 -37.14573 -35.21245 -34.29754 -33.53173 -32.42443 -30.52626 -29.21374 -27.62838 -27.11486 -26.77376 -25.44987 -24.22863 -23.89930 -23.00641 -22.77113 -22.11041 -20.58932 -20.39639 -19.56853 -19.47263 -19.24481 -18.71029 -18.38677 -18.32355 -18.17542 -17.89128 -17.71474 -17.37766 -17.11220 -17.01299 -16.72889 -16.52471 -16.33690 -15.93915 -15.89808 -15.66739 -15.59389 -15.33191 -15.11400 -14.95246 -14.72683 -14.22965 -14.13136 -13.98510 -13.73897 -13.41044 -13.34113 -13.02228 -12.62843 -12.44468 -12.37156 -12.22384 -12.15391 -11.90991 -11.87860 -11.79781 -11.75857 -11.52107 -11.34157 -11.07750 -10.97461 -10.79958 -10.66938 -10.34843 -9.94929 -5.33863 -1.16798 -0.42332 0.34840 0.39216 0.49986 0.95670 1.00706 1.23764 1.29969 1.32785 1.72534 1.86208 1.88594 1.89556 2.07301 2.69724 2.94513 2.96127 3.02011 3.04838 3.15787 3.20450 3.30433 3.34577 3.43461 3.47455 3.51077 3.58756 3.66919 3.72893 3.90308 4.09993 4.11918 4.13412 4.26844 4.32090 4.38577 4.43235 4.56809 4.60486 4.63627 4.65915 4.77947 4.88496 4.89307 5.25199 5.39759 5.54692 5.66670 5.73301 6.12049 6.18268 6.29833 6.90889 6.92382 6.97922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.066 4.066 3 Si 0.693 3.307 4 C -0.157 4.157 5 C -0.025 4.025 6 C -0.209 4.209 7 C 0.199 3.801 8 O -0.254 6.254 9 C 0.031 3.969 10 C 0.516 3.484 11 O -0.490 6.490 12 N -0.711 5.711 13 C 0.127 3.873 14 H 0.112 0.888 15 C -0.139 4.139 16 C -0.113 4.113 17 H 0.114 0.886 18 C 0.100 3.900 19 N -0.721 5.721 20 C 0.704 3.296 21 O -0.539 6.539 22 N -0.682 5.682 23 C 0.530 3.470 24 O -0.458 6.458 25 C -0.151 4.151 26 C -0.075 4.075 27 N 0.028 4.972 28 O -0.176 6.176 29 O -0.118 6.118 30 C 0.009 3.991 31 H 0.381 0.619 32 H 0.121 0.879 33 H -0.248 1.248 34 H -0.254 1.254 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.402 0.598 40 H 0.116 0.884 41 H 0.085 0.915 42 H 0.133 0.867 43 H 0.442 0.558 44 H 0.435 0.565 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.789 13.980 -2.681 14.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.176 4.176 3 Si 0.594 3.406 4 C -0.159 4.159 5 C -0.043 4.043 6 C -0.228 4.228 7 C 0.150 3.850 8 O -0.163 6.163 9 C -0.047 4.047 10 C 0.299 3.701 11 O -0.361 6.361 12 N -0.366 5.366 13 C 0.022 3.978 14 H 0.130 0.870 15 C -0.178 4.178 16 C -0.132 4.132 17 H 0.132 0.868 18 C -0.009 4.009 19 N -0.386 5.386 20 C 0.403 3.597 21 O -0.412 6.412 22 N -0.353 5.353 23 C 0.316 3.684 24 O -0.326 6.326 25 C -0.190 4.190 26 C -0.159 4.159 27 N 0.548 4.452 28 O -0.385 6.385 29 O -0.342 6.342 30 C -0.009 4.009 31 H 0.229 0.771 32 H 0.138 0.862 33 H -0.173 1.173 34 H -0.179 1.179 35 H 0.166 0.834 36 H 0.174 0.826 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.236 0.764 40 H 0.134 0.866 41 H 0.103 0.897 42 H 0.150 0.850 43 H 0.287 0.713 44 H 0.278 0.722 45 H 0.099 0.901 46 H 0.108 0.892 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.223 13.498 -1.767 13.793 hybrid contribution 0.692 -0.357 0.180 0.799 sum 2.916 13.141 -1.587 13.554 Atomic orbital electron populations 1.86565 1.16563 1.81605 1.49335 1.25104 0.85711 1.10261 0.96574 0.94918 0.80653 0.76962 0.88107 1.20323 1.02176 0.93995 0.99376 1.21265 0.91889 0.99818 0.91318 1.21261 1.07140 0.92665 1.01774 1.18682 0.89987 0.90792 0.85571 1.86506 1.62810 1.37491 1.29471 1.22711 0.96394 0.94891 0.90706 1.19832 0.79038 0.88198 0.83020 1.90886 1.52069 1.17050 1.76115 1.45434 1.52747 1.15617 1.22763 1.21747 0.96288 0.94505 0.85266 0.87010 1.23518 0.93358 1.02210 0.98708 1.22967 0.93490 1.00408 0.96376 0.86842 1.22095 0.84224 0.97279 0.97325 1.45511 1.16396 1.16064 1.60671 1.15851 0.83858 0.81417 0.78540 1.91104 1.17702 1.76003 1.56407 1.44444 1.17432 1.19560 1.53896 1.20776 0.81797 0.87634 0.78242 1.90880 1.32635 1.71449 1.37643 1.23627 0.96796 0.96920 1.01675 1.20594 1.10441 0.84136 1.00750 1.43343 0.99212 1.02266 1.00371 1.94559 1.35181 1.66562 1.42182 1.94701 1.54923 1.67574 1.16973 1.20845 0.93488 0.93545 0.93071 0.77120 0.86151 1.17273 1.17929 0.83397 0.82606 0.87868 0.88053 0.76359 0.86554 0.89679 0.84987 0.71319 0.72241 0.90116 0.89167 0.81782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.06 12.76 -35.23 -0.45 0.61 16 2 C -0.07 0.19 2.82 36.01 0.10 0.30 16 3 Si 0.69 -2.93 29.78 -169.99 -5.06 -7.99 16 4 C -0.16 0.41 5.39 -104.60 -0.56 -0.16 16 5 C -0.03 0.11 8.66 -39.61 -0.34 -0.23 16 6 C -0.21 0.86 9.04 -39.43 -0.36 0.50 16 7 C 0.20 0.00 6.67 -39.22 -0.26 -0.26 16 8 O -0.25 -0.35 7.68 -49.77 -0.38 -0.73 16 9 C 0.03 -0.12 5.22 36.01 0.19 0.07 16 10 C 0.52 -0.35 7.91 -10.99 -0.09 -0.44 16 11 O -0.49 -2.60 16.12 -14.35 -0.23 -2.83 16 12 N -0.71 3.05 5.26 -53.02 -0.28 2.77 16 13 C 0.13 -0.36 4.29 -67.12 -0.29 -0.65 16 14 H 0.11 0.00 7.50 -51.92 -0.39 -0.39 16 15 C -0.14 0.71 7.21 -25.92 -0.19 0.52 16 16 C -0.11 0.67 3.85 -89.66 -0.35 0.32 16 17 H 0.11 -0.92 8.14 -51.93 -0.42 -1.34 16 18 C 0.10 -0.51 3.83 -68.21 -0.26 -0.77 16 19 N -0.72 3.01 6.24 -59.19 -0.37 2.64 16 20 C 0.70 -0.28 9.00 -88.01 -0.79 -1.07 16 21 O -0.54 -2.22 18.04 5.33 0.10 -2.12 16 22 N -0.68 1.25 5.72 -15.71 -0.09 1.16 16 23 C 0.53 -1.09 5.95 -10.40 -0.06 -1.15 16 24 O -0.46 -0.27 16.17 5.59 0.09 -0.18 16 25 C -0.15 0.46 7.18 -25.78 -0.19 0.27 16 26 C -0.07 -0.17 6.87 -79.81 -0.55 -0.72 16 27 N 0.03 0.17 4.45 34.03 0.15 0.32 16 28 O -0.18 -1.23 18.45 -29.46 -0.54 -1.78 16 29 O -0.12 -0.97 17.24 -36.49 -0.63 -1.60 16 30 C 0.01 0.00 9.11 -39.61 -0.36 -0.36 16 31 H 0.38 -2.29 8.70 45.56 0.40 -1.89 16 32 H 0.12 -0.29 7.96 -51.93 -0.41 -0.71 16 33 H -0.25 0.09 7.11 56.52 0.40 0.49 16 34 H -0.25 0.62 7.11 56.52 0.40 1.02 16 35 H 0.15 -1.07 4.87 -52.49 -0.26 -1.33 16 36 H 0.16 -1.23 6.30 -52.48 -0.33 -1.56 16 37 H 0.10 -0.74 7.66 -51.93 -0.40 -1.14 16 38 H 0.10 -0.70 7.66 -51.93 -0.40 -1.10 16 39 H 0.40 -3.26 8.70 -40.82 -0.36 -3.62 16 40 H 0.12 -0.40 6.27 -51.93 -0.33 -0.72 16 41 H 0.08 -0.56 8.14 -51.93 -0.42 -0.99 16 42 H 0.13 -0.93 8.14 -51.93 -0.42 -1.35 16 43 H 0.44 -2.69 8.96 -40.82 -0.37 -3.06 16 44 H 0.43 -1.21 8.96 -40.82 -0.37 -1.58 16 45 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 46 H 0.09 -0.13 6.29 -51.93 -0.33 -0.46 16 47 H 0.16 0.04 7.61 -52.49 -0.40 -0.36 16 LS Contribution 405.17 15.07 6.11 6.11 Total: 0.00 -17.35 405.17 -10.76 -28.11 By element: Atomic # 1 Polarization: -15.86 SS G_CDS: -4.82 Total: -20.67 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -4.35 Total: -3.82 kcal Atomic # 7 Polarization: 7.48 SS G_CDS: -0.59 Total: 6.90 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -2.05 Total: -8.64 kcal Atomic # 14 Polarization: -2.93 SS G_CDS: -5.06 Total: -7.99 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -17.35 -10.76 -28.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_4549638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.587 kcal (2) G-P(sol) polarization free energy of solvation -17.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds