Wall clock time and date at job start Tue Mar 9 2021 13:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35995 * 117.00022 * 2 1 4 4 C 1.39151 * 120.07446 * 179.97438 * 3 2 1 5 5 O 1.35994 * 120.07339 * 359.97438 * 4 3 2 6 6 C 1.42898 * 117.00031 * 179.72582 * 5 4 3 7 7 C 1.50704 * 109.46964 * 179.97438 * 6 5 4 8 8 O 1.21276 * 120.00030 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99932 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00137 * 180.02562 * 9 7 6 11 11 H 1.09003 * 112.85210 * 336.20106 * 10 9 7 12 12 C 1.53784 * 113.69023 * 107.46400 * 10 9 7 13 13 C 1.53788 * 87.07909 * 89.13045 * 12 10 9 14 14 H 1.08997 * 113.69121 * 270.87663 * 13 12 10 15 15 C 1.52999 * 113.61323 * 139.97955 * 13 12 10 16 16 N 1.47307 * 110.59718 * 82.50380 * 15 13 12 17 17 C 1.34530 * 106.61845 * 118.67762 * 16 15 13 18 18 O 1.21545 * 123.76882 * 180.02562 * 17 16 15 19 19 N 1.33792 * 112.45897 * 359.97438 * 17 16 15 20 20 C 1.34772 * 111.64131 * 0.23433 * 19 17 16 21 21 O 1.21236 * 127.15358 * 179.73610 * 20 19 17 22 22 C 1.53781 * 87.08045 * 25.43380 * 13 12 10 23 23 C 1.38572 * 119.85479 * 179.72496 * 4 3 2 24 24 C 1.38237 * 119.99801 * 0.26882 * 23 4 3 25 25 C 1.38257 * 120.14964 * 0.02562 * 24 23 4 26 26 C 1.50700 * 119.92727 * 180.02562 * 25 24 23 27 27 O 1.42894 * 109.46994 * 244.99824 * 26 25 24 28 28 Si 1.86297 * 109.47144 * 5.00260 * 26 25 24 29 29 C 1.38246 * 120.14191 * 359.97438 * 25 24 23 30 30 H 1.08995 * 109.46960 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47038 * 300.00120 * 1 2 3 32 32 H 1.08998 * 109.46802 * 60.00001 * 1 2 3 33 33 H 1.09004 * 109.46897 * 60.00203 * 6 5 4 34 34 H 1.08993 * 109.47604 * 300.00393 * 6 5 4 35 35 H 0.96999 * 120.00069 * 0.02562 * 9 7 6 36 36 H 1.09002 * 113.61404 * 334.58300 * 12 10 9 37 37 H 1.09004 * 113.61648 * 203.67791 * 12 10 9 38 38 H 1.09000 * 110.53620 * 319.67367 * 15 13 12 39 39 H 0.96998 * 126.69567 * 298.71335 * 16 15 13 40 40 H 0.97001 * 124.17607 * 179.97438 * 19 17 16 41 41 H 1.08999 * 113.61593 * 89.11689 * 22 13 12 42 42 H 1.09001 * 113.61843 * 219.93895 * 22 13 12 43 43 H 1.07998 * 119.99980 * 180.29626 * 23 4 3 44 44 H 1.08003 * 119.92909 * 179.97438 * 24 23 4 45 45 H 1.09003 * 109.46755 * 125.00189 * 26 25 24 46 46 H 0.96701 * 114.00196 * 60.00377 * 27 26 25 47 47 H 1.48497 * 110.00312 * 58.67613 * 28 26 25 48 48 H 1.48498 * 109.99985 * 179.97438 * 28 26 25 49 49 H 1.08000 * 119.99346 * 179.97438 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 0.0005 5 8 4.1796 0.1477 0.0016 6 6 5.6003 0.3007 -0.0040 7 6 6.2519 -1.0582 -0.0013 8 8 5.5670 -2.0590 0.0044 9 7 7.5957 -1.1612 -0.0062 10 6 8.2292 -2.4821 -0.0041 11 1 7.5851 -3.2598 0.4065 12 6 8.8722 -2.8612 -1.3486 13 6 10.1553 -2.1864 -0.8356 14 1 10.2126 -1.1224 -1.0652 15 6 11.4339 -2.9429 -1.2014 16 7 11.8584 -2.6104 -2.5723 17 6 13.0757 -2.0465 -2.4720 18 8 13.7178 -1.6513 -3.4253 19 7 13.5000 -1.9683 -1.2056 20 6 12.5975 -2.4818 -0.3464 21 8 12.6955 -2.5579 0.8596 22 6 9.6493 -2.4834 0.5859 23 6 4.0603 2.5234 -0.0052 24 6 3.3030 3.6799 -0.0059 25 6 1.9224 3.6058 -0.0003 26 6 1.1017 4.8697 -0.0016 27 8 0.3695 4.9634 1.2219 28 14 2.2303 6.3429 -0.1644 29 6 1.2933 2.3748 0.0055 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 5.9097 0.8534 0.8831 34 1 5.9034 0.8476 -0.8967 35 1 8.1435 -0.3607 -0.0111 36 1 8.4251 -2.3553 -2.2044 37 1 8.9734 -3.9363 -1.4965 38 1 11.2858 -4.0176 -1.0959 39 1 11.3578 -2.7670 -3.3882 40 1 14.3535 -1.5921 -0.9391 41 1 9.9630 -3.4553 0.9669 42 1 9.8308 -1.6733 1.2922 43 1 5.1386 2.5840 -0.0097 44 1 3.7908 4.6434 -0.0100 45 1 0.4061 4.8503 -0.8407 46 1 0.9258 4.9853 2.0126 47 1 3.0207 6.2412 -1.4174 48 1 1.4330 7.5956 -0.1676 49 1 0.2147 2.3197 0.0103 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17522896_60476.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:38:51 Heat of formation + Delta-G solvation = -123.157324 kcal Electronic energy + Delta-G solvation = -35612.123232 eV Core-core repulsion = 30508.793669 eV Total energy + Delta-G solvation = -5103.329564 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 392.155 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.42784 -41.83259 -41.20062 -39.97574 -39.58597 -39.03430 -38.75700 -37.22487 -36.90799 -35.06163 -34.07610 -32.02980 -31.46228 -30.05844 -28.90949 -28.41734 -26.72545 -26.20956 -25.08777 -23.73104 -23.59103 -22.65082 -22.44719 -21.85927 -20.47528 -19.78921 -19.41358 -18.52276 -18.39443 -17.94470 -17.89653 -17.65490 -17.50965 -17.23486 -16.98589 -16.79921 -16.66957 -16.42174 -16.10491 -16.04293 -15.75922 -15.65422 -15.63312 -15.34452 -15.29297 -15.06406 -14.67877 -14.30272 -14.01072 -13.76756 -13.66902 -13.55580 -13.38705 -13.33084 -12.65400 -12.58475 -12.52826 -12.30618 -12.16774 -12.12237 -11.97076 -11.76021 -11.72493 -11.62199 -11.48777 -11.07116 -10.99113 -10.47943 -10.43128 -10.13447 -9.79210 -8.91250 -4.97102 0.16706 0.28076 0.54459 1.33672 1.41371 1.46202 1.48204 1.67626 1.94158 2.00471 2.17530 2.30800 2.56292 2.57370 2.85028 3.39229 3.49621 3.52920 3.61055 3.68391 3.70700 3.86389 3.87672 3.90394 3.92430 4.05521 4.13450 4.14602 4.28525 4.29988 4.33570 4.36141 4.40632 4.49749 4.63631 4.65709 4.68900 4.81938 4.87429 4.96930 5.00631 5.04904 5.07230 5.12444 5.15644 5.37447 5.54890 5.60188 5.79892 5.88791 5.96996 6.38816 6.41095 6.54258 6.78175 7.10625 7.15085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.334 6.334 3 C 0.076 3.924 4 C 0.086 3.914 5 O -0.314 6.314 6 C 0.033 3.967 7 C 0.516 3.484 8 O -0.570 6.570 9 N -0.693 5.693 10 C 0.110 3.890 11 H 0.086 0.914 12 C -0.133 4.133 13 C -0.104 4.104 14 H 0.112 0.888 15 C 0.108 3.892 16 N -0.703 5.703 17 C 0.702 3.298 18 O -0.589 6.589 19 N -0.677 5.677 20 C 0.530 3.470 21 O -0.486 6.486 22 C -0.123 4.123 23 C -0.159 4.159 24 C -0.109 4.109 25 C -0.120 4.120 26 C -0.076 4.076 27 O -0.557 6.557 28 Si 0.787 3.213 29 C -0.153 4.153 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.420 0.580 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.157 0.843 39 H 0.451 0.549 40 H 0.437 0.563 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.177 0.823 44 H 0.161 0.839 45 H 0.103 0.897 46 H 0.396 0.604 47 H -0.280 1.280 48 H -0.304 1.304 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 3.043 1.875 4.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.031 3.969 4 C 0.040 3.960 5 O -0.227 6.227 6 C -0.045 4.045 7 C 0.302 3.698 8 O -0.447 6.447 9 N -0.347 5.347 10 C 0.005 3.995 11 H 0.105 0.895 12 C -0.171 4.171 13 C -0.123 4.123 14 H 0.130 0.870 15 C 0.000 4.000 16 N -0.367 5.367 17 C 0.402 3.598 18 O -0.466 6.466 19 N -0.347 5.347 20 C 0.317 3.683 21 O -0.357 6.357 22 C -0.162 4.162 23 C -0.177 4.177 24 C -0.126 4.126 25 C -0.120 4.120 26 C -0.185 4.185 27 O -0.366 6.366 28 Si 0.692 3.308 29 C -0.172 4.172 30 H 0.130 0.870 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.258 0.742 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.174 0.826 39 H 0.298 0.702 40 H 0.280 0.720 41 H 0.128 0.872 42 H 0.102 0.898 43 H 0.194 0.806 44 H 0.178 0.822 45 H 0.120 0.880 46 H 0.246 0.754 47 H -0.207 1.207 48 H -0.232 1.232 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.387 2.724 1.161 3.804 hybrid contribution -0.294 0.003 -0.626 0.691 sum 2.093 2.727 0.535 3.479 Atomic orbital electron populations 1.23276 0.76866 1.05211 1.02022 1.86188 1.22933 1.26614 1.89096 1.18668 0.89969 0.85565 1.02701 1.18574 0.88140 0.86571 1.02698 1.86221 1.18243 1.28978 1.89283 1.22794 0.79351 0.95319 1.07034 1.20512 0.82999 0.90748 0.75513 1.90779 1.64056 1.40096 1.49806 1.45343 1.04982 1.09743 1.74649 1.21886 0.94123 0.85227 0.98261 0.89538 1.23482 0.93729 1.02698 0.97210 1.22849 0.90782 1.00802 0.97873 0.86992 1.22313 0.93166 1.04299 0.80232 1.45499 1.17559 1.63716 1.09975 1.15998 0.82862 0.78447 0.82530 1.91075 1.60807 1.54802 1.39910 1.44346 1.23327 1.58944 1.08122 1.21075 0.84710 0.75547 0.86963 1.90878 1.78779 1.53467 1.12527 1.23297 0.92386 1.04949 0.95540 1.21391 1.02301 0.89298 1.04755 1.21005 0.92213 0.99007 1.00380 1.20199 0.94554 0.94782 1.02512 1.25262 1.01056 1.02306 0.89918 1.86467 1.37564 1.96615 1.15916 0.93680 0.79265 0.72498 0.85337 1.21013 1.00466 0.90653 1.05077 0.87030 0.91749 0.91954 0.85377 0.85595 0.74207 0.90410 0.87001 0.82598 0.70185 0.71960 0.87177 0.89795 0.80571 0.82245 0.87960 0.75443 1.20678 1.23238 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.81 113.37 1.11 1.16 16 2 O -0.33 -3.49 10.28 -79.63 -0.82 -4.31 16 3 C 0.08 0.56 6.70 22.57 0.15 0.71 16 4 C 0.09 0.38 6.70 22.57 0.15 0.53 16 5 O -0.31 -2.20 9.45 -67.07 -0.63 -2.83 16 6 C 0.03 -0.14 5.22 71.24 0.37 0.23 16 7 C 0.52 0.44 7.91 87.66 0.69 1.13 16 8 O -0.57 -7.55 16.10 16.02 0.26 -7.30 16 9 N -0.69 5.17 5.27 -440.04 -2.32 2.86 16 10 C 0.11 -0.75 4.32 45.52 0.20 -0.55 16 11 H 0.09 -0.08 7.46 -2.39 -0.02 -0.10 16 12 C -0.13 1.44 7.44 31.12 0.23 1.67 16 13 C -0.10 1.28 3.37 -10.27 -0.03 1.25 16 14 H 0.11 -1.51 8.14 -2.39 -0.02 -1.53 16 15 C 0.11 -1.19 3.42 44.37 0.15 -1.04 16 16 N -0.70 6.26 6.24 -459.61 -2.87 3.39 16 17 C 0.70 -0.92 8.99 179.44 1.61 0.69 16 18 O -0.59 -5.00 18.04 -3.86 -0.07 -5.07 16 19 N -0.68 3.07 5.70 -441.10 -2.52 0.55 16 20 C 0.53 -2.75 8.01 87.94 0.70 -2.04 16 21 O -0.49 -0.38 17.50 -2.89 -0.05 -0.43 16 22 C -0.12 1.25 6.67 31.12 0.21 1.46 16 23 C -0.16 0.59 9.04 22.35 0.20 0.80 16 24 C -0.11 0.46 8.66 22.27 0.19 0.65 16 25 C -0.12 0.05 5.35 -19.86 -0.11 -0.06 16 26 C -0.08 0.11 2.80 71.24 0.20 0.31 16 27 O -0.56 0.24 12.83 -148.98 -1.91 -1.67 16 28 Si 0.79 -3.46 29.80 68.60 2.04 -1.42 16 29 C -0.15 -0.53 8.67 22.35 0.19 -0.34 16 30 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.06 0.00 7.65 -2.39 -0.02 -0.02 16 32 H 0.06 0.00 7.68 -2.39 -0.02 -0.02 16 33 H 0.13 -1.46 7.66 -2.38 -0.02 -1.48 16 34 H 0.13 -1.42 7.66 -2.39 -0.02 -1.44 16 35 H 0.42 -6.15 8.70 -92.71 -0.81 -6.96 16 36 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 37 H 0.11 -1.43 8.03 -2.39 -0.02 -1.45 16 38 H 0.16 -2.34 8.05 -2.39 -0.02 -2.36 16 39 H 0.45 -5.40 8.96 -92.71 -0.83 -6.23 16 40 H 0.44 -2.72 8.96 -92.71 -0.83 -3.55 16 41 H 0.11 -1.12 8.10 -2.39 -0.02 -1.14 16 42 H 0.08 -0.80 8.14 -2.39 -0.02 -0.82 16 43 H 0.18 -2.15 6.30 -2.91 -0.02 -2.17 16 44 H 0.16 -1.64 4.89 -2.91 -0.01 -1.65 16 45 H 0.10 0.02 7.96 -2.39 -0.02 0.00 16 46 H 0.40 -3.40 8.70 -74.06 -0.64 -4.05 16 47 H -0.28 0.12 7.11 99.48 0.71 0.83 16 48 H -0.30 -1.18 7.11 99.48 0.71 -0.47 16 49 H 0.14 0.32 6.30 -2.91 -0.02 0.30 16 Total: 0.00 -40.20 414.18 -4.65 -44.85 By element: Atomic # 1 Polarization: -33.17 SS G_CDS: -2.00 Total: -35.17 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 6.23 Total: 6.56 kcal Atomic # 7 Polarization: 14.50 SS G_CDS: -7.70 Total: 6.79 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -3.23 Total: -21.62 kcal Atomic # 14 Polarization: -3.46 SS G_CDS: 2.04 Total: -1.42 kcal Total: -40.20 -4.65 -44.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_60476.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.308 kcal (2) G-P(sol) polarization free energy of solvation -40.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds