Wall clock time and date at job start Tue Mar 9 2021 13:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34235 * 116.99933 * 2 1 4 4 O 1.20815 * 119.99931 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99750 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47325 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47618 * 179.97438 * 6 5 3 8 8 H 1.09007 * 112.84694 * 43.80067 * 7 6 5 9 9 C 1.53782 * 113.61561 * 174.99594 * 7 6 5 10 10 C 1.53781 * 87.07854 * 139.98019 * 9 7 6 11 11 H 1.09002 * 113.61190 * 219.93377 * 10 9 7 12 12 N 1.46506 * 113.61485 * 89.12093 * 10 9 7 13 13 C 1.34777 * 120.00264 * 155.00059 * 12 10 9 14 14 O 1.21695 * 119.99811 * 359.97438 * 13 12 10 15 15 C 1.46426 * 119.99830 * 180.02562 * 13 12 10 16 16 C 1.34807 * 119.99543 * 179.97438 * 15 13 12 17 17 C 1.47216 * 119.99573 * 179.97438 * 16 15 13 18 18 C 1.39829 * 120.16975 * 359.72186 * 17 16 15 19 19 C 1.37889 * 119.82417 * 179.79155 * 18 17 16 20 20 C 1.38397 * 120.17340 * 0.46228 * 19 18 17 21 21 C 1.50696 * 119.83189 * 179.76754 * 20 19 18 22 22 O 1.42908 * 109.47076 * 245.02626 * 21 20 19 23 23 Si 1.86299 * 109.47157 * 5.02191 * 21 20 19 24 24 C 1.38407 * 120.34254 * 359.79018 * 20 19 18 25 25 C 1.37888 * 120.17191 * 359.97438 * 24 20 19 26 26 C 1.53777 * 113.61271 * 272.49675 * 7 6 5 27 27 H 1.09000 * 109.47048 * 300.00235 * 1 2 3 28 28 H 1.08995 * 109.47211 * 60.00038 * 1 2 3 29 29 H 1.09004 * 109.47144 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47403 * 59.99536 * 5 3 2 31 31 H 1.09008 * 109.46869 * 299.99624 * 5 3 2 32 32 H 1.09001 * 109.47325 * 59.99407 * 6 5 3 33 33 H 1.09010 * 109.46820 * 300.00150 * 6 5 3 34 34 H 1.09002 * 113.61323 * 25.43660 * 9 7 6 35 35 H 1.08995 * 113.69350 * 254.53982 * 9 7 6 36 36 H 0.96999 * 119.99689 * 334.99452 * 12 10 9 37 37 H 1.07999 * 120.00128 * 359.97438 * 15 13 12 38 38 H 1.07999 * 120.00329 * 359.97438 * 16 15 13 39 39 H 1.08005 * 120.08910 * 0.02562 * 18 17 16 40 40 H 1.08009 * 119.91476 * 180.22961 * 19 18 17 41 41 H 1.08995 * 109.47481 * 125.02459 * 21 20 19 42 42 H 0.96703 * 113.99986 * 180.02562 * 22 21 20 43 43 H 1.48502 * 109.99982 * 300.00185 * 23 21 20 44 44 H 1.48500 * 109.99848 * 61.31910 * 23 21 20 45 45 H 1.07998 * 119.91105 * 179.97438 * 24 20 19 46 46 H 1.07996 * 120.09034 * 179.97438 * 25 24 20 47 47 H 1.09003 * 113.61817 * 105.47004 * 26 7 6 48 48 H 1.08997 * 113.61878 * 334.56171 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7420 0.0002 7 6 5.5280 2.8221 0.0002 8 1 5.9886 2.1206 -0.6954 9 6 6.0697 4.2562 -0.1219 10 6 7.1384 3.8563 0.9091 11 1 7.3510 4.6347 1.6419 12 7 8.3507 3.2931 0.3095 13 6 9.5240 3.3634 0.9690 14 8 9.5764 3.8950 2.0624 15 6 10.7357 2.8010 0.3694 16 6 11.9093 2.8718 1.0288 17 6 13.1274 2.3058 0.4262 18 6 13.0700 1.6890 -0.8273 19 6 14.2161 1.1652 -1.3870 20 6 15.4193 1.2402 -0.7072 21 6 16.6661 0.6605 -1.3237 22 8 17.1256 -0.4348 -0.5291 23 14 16.2863 0.0614 -3.0464 24 6 15.4832 1.8445 0.5364 25 6 14.3467 2.3774 1.1072 26 6 6.1463 2.7924 1.4079 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9557 0.7809 -0.8908 31 1 3.9563 0.7806 0.8893 32 1 3.6108 3.2357 0.8906 33 1 3.6100 3.2368 -0.8894 34 1 5.3775 5.0167 0.2394 35 1 6.4774 4.4881 -1.1058 36 1 8.3089 2.8696 -0.5622 37 1 10.6891 2.3295 -0.6012 38 1 11.9559 3.3436 1.9992 39 1 12.1311 1.6264 -1.3575 40 1 14.1741 0.6917 -2.3569 41 1 17.4398 1.4270 -1.3680 42 1 17.9272 -0.8571 -0.8672 43 1 15.2328 -0.9842 -2.9997 44 1 15.8377 1.1969 -3.8917 45 1 16.4256 1.8988 1.0609 46 1 14.3980 2.8482 2.0777 47 1 6.6158 1.8411 1.6586 48 1 5.4751 3.1527 2.1874 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17523010_12360594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:37 Heat of formation + Delta-G solvation = -88.699719 kcal Electronic energy + Delta-G solvation = -28045.479018 eV Core-core repulsion = 23840.085995 eV Total energy + Delta-G solvation = -4205.393023 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.166 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.63513 -41.28454 -40.65969 -39.55237 -37.72701 -37.65190 -35.23472 -35.11624 -33.27755 -32.34093 -31.36429 -29.15512 -27.52100 -26.77454 -26.52382 -24.40440 -24.08483 -23.11196 -22.13879 -21.60739 -20.54874 -20.21950 -18.81926 -18.59007 -18.37471 -17.71306 -17.54871 -17.45042 -17.16160 -16.67787 -16.31945 -16.05408 -15.91659 -15.45056 -15.27140 -15.13324 -15.10278 -14.66439 -14.41278 -14.34710 -14.14378 -14.05872 -13.85694 -13.61458 -13.45081 -13.40823 -13.05667 -13.04617 -12.67123 -12.38290 -12.16019 -12.05002 -11.96458 -11.89707 -11.85121 -11.67426 -11.41977 -11.29961 -11.14728 -11.08280 -10.30572 -10.13835 -10.11332 -9.33973 -4.93431 -0.65439 0.23952 0.78622 1.13251 1.29869 1.64724 1.76215 1.95776 2.09505 2.14849 2.67808 3.37026 3.47072 3.50488 3.51624 3.63397 3.70870 3.74409 3.85735 3.86155 3.90090 4.08079 4.11448 4.18688 4.21182 4.23051 4.26571 4.29318 4.31015 4.48826 4.52614 4.58254 4.68076 4.70700 4.75026 4.80026 4.84590 4.86726 4.89619 4.97506 5.02624 5.04824 5.11810 5.21754 5.27732 5.30967 5.35375 5.40245 5.48139 5.63408 5.76512 6.49583 6.67176 6.89077 7.16991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.454 3.546 4 O -0.545 6.545 5 C -0.108 4.108 6 C -0.095 4.095 7 C -0.095 4.095 8 H 0.114 0.886 9 C -0.133 4.133 10 C 0.108 3.892 11 H 0.077 0.923 12 N -0.693 5.693 13 C 0.545 3.455 14 O -0.591 6.591 15 C -0.208 4.208 16 C -0.019 4.019 17 C -0.081 4.081 18 C -0.096 4.096 19 C -0.144 4.144 20 C -0.081 4.081 21 C -0.084 4.084 22 O -0.564 6.564 23 Si 0.773 3.227 24 C -0.103 4.103 25 C -0.098 4.098 26 C -0.147 4.147 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.418 0.582 37 H 0.160 0.840 38 H 0.128 0.872 39 H 0.154 0.846 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.404 0.596 43 H -0.294 1.294 44 H -0.287 1.287 45 H 0.142 0.858 46 H 0.147 0.853 47 H 0.070 0.930 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.159 -4.356 -5.886 8.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.300 3.700 4 O -0.436 6.436 5 C -0.145 4.145 6 C -0.133 4.133 7 C -0.113 4.113 8 H 0.132 0.868 9 C -0.171 4.171 10 C 0.002 3.998 11 H 0.095 0.905 12 N -0.343 5.343 13 C 0.335 3.665 14 O -0.473 6.473 15 C -0.228 4.228 16 C -0.039 4.039 17 C -0.081 4.081 18 C -0.114 4.114 19 C -0.161 4.161 20 C -0.081 4.081 21 C -0.193 4.193 22 O -0.374 6.374 23 Si 0.679 3.321 24 C -0.121 4.121 25 C -0.115 4.115 26 C -0.185 4.185 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.256 0.744 37 H 0.177 0.823 38 H 0.146 0.854 39 H 0.172 0.828 40 H 0.140 0.860 41 H 0.113 0.887 42 H 0.255 0.745 43 H -0.222 1.222 44 H -0.215 1.215 45 H 0.159 0.841 46 H 0.164 0.836 47 H 0.089 0.911 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.822 -3.627 -5.406 7.095 hybrid contribution -0.713 0.391 0.334 0.879 sum 2.109 -3.235 -5.072 6.375 Atomic orbital electron populations 1.23489 0.75260 1.05504 1.02312 1.86516 1.24680 1.33547 1.83752 1.24630 0.93666 0.80796 0.70930 1.90673 1.68417 1.37480 1.47002 1.21557 0.84758 1.00431 1.07784 1.21364 0.95027 0.93826 1.03080 1.22567 0.93855 0.97580 0.97297 0.86778 1.23332 0.96615 0.97621 0.99571 1.21871 0.83982 0.96807 0.97094 0.90481 1.45430 1.06763 1.59429 1.22716 1.18685 0.84743 0.78554 0.84499 1.90817 1.86968 1.46743 1.22776 1.22997 0.91597 1.05344 1.02885 1.22358 0.90872 0.92257 0.98420 1.19123 0.93461 1.00363 0.95199 1.21566 0.99030 0.96186 0.94597 1.21016 0.93180 1.01842 1.00110 1.19929 0.94319 0.98118 0.95764 1.24890 0.96196 0.92726 1.05513 1.86445 1.49688 1.47289 1.53999 0.94286 0.85326 0.78559 0.73953 1.21179 0.99512 0.96897 0.94493 1.21726 0.91559 0.97901 1.00361 1.23517 0.97897 0.99457 0.97675 0.92266 0.92114 0.85413 0.85198 0.86044 0.92040 0.91355 0.88617 0.89560 0.74423 0.82252 0.85407 0.82847 0.86005 0.88737 0.74482 1.22202 1.21466 0.84053 0.83569 0.91096 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.37 -1.05 10.57 -51.47 -0.54 -1.59 16 3 C 0.45 1.58 7.96 71.24 0.57 2.15 16 4 O -0.55 -5.72 15.73 22.00 0.35 -5.38 16 5 C -0.11 0.50 5.80 29.85 0.17 0.67 16 6 C -0.10 0.33 4.34 30.59 0.13 0.46 16 7 C -0.09 0.61 3.53 -10.27 -0.04 0.58 16 8 H 0.11 -1.17 8.13 -2.38 -0.02 -1.19 16 9 C -0.13 0.63 7.39 31.12 0.23 0.86 16 10 C 0.11 -0.04 4.32 45.52 0.20 0.16 16 11 H 0.08 0.42 7.46 -2.39 -0.02 0.41 16 12 N -0.69 1.12 5.26 -444.24 -2.34 -1.22 16 13 C 0.54 2.68 7.74 86.37 0.67 3.35 16 14 O -0.59 -8.56 15.83 -4.33 -0.07 -8.63 16 15 C -0.21 -0.03 9.41 23.62 0.22 0.19 16 16 C -0.02 -0.05 9.46 23.84 0.23 0.18 16 17 C -0.08 -0.21 5.87 -20.15 -0.12 -0.33 16 18 C -0.10 -0.13 9.41 22.57 0.21 0.08 16 19 C -0.14 -0.50 8.65 22.22 0.19 -0.31 16 20 C -0.08 -0.29 5.39 -19.79 -0.11 -0.39 16 21 C -0.08 0.13 2.79 71.23 0.20 0.33 16 22 O -0.56 0.61 12.81 -148.98 -1.91 -1.30 16 23 Si 0.77 -2.53 29.84 68.60 2.05 -0.49 16 24 C -0.10 -0.29 9.66 22.23 0.21 -0.08 16 25 C -0.10 -0.23 9.80 22.57 0.22 -0.01 16 26 C -0.15 0.40 7.43 31.12 0.23 0.63 16 27 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 28 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 29 H 0.13 -0.79 8.14 -2.38 -0.02 -0.81 16 30 H 0.13 -1.18 8.14 -2.39 -0.02 -1.20 16 31 H 0.12 -0.88 8.14 -2.38 -0.02 -0.89 16 32 H 0.06 -0.01 7.80 -2.39 -0.02 -0.03 16 33 H 0.07 -0.10 8.10 -2.38 -0.02 -0.12 16 34 H 0.10 -0.36 8.10 -2.39 -0.02 -0.38 16 35 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 36 H 0.42 -3.52 8.68 -92.71 -0.80 -4.33 16 37 H 0.16 -1.07 6.07 -2.91 -0.02 -1.09 16 38 H 0.13 0.59 7.52 -2.91 -0.02 0.57 16 39 H 0.15 -0.68 6.17 -2.91 -0.02 -0.70 16 40 H 0.12 0.29 4.84 -2.91 -0.01 0.27 16 41 H 0.09 -0.52 7.96 -2.39 -0.02 -0.54 16 42 H 0.40 -4.68 8.74 -74.06 -0.65 -5.33 16 43 H -0.29 -1.13 7.04 99.48 0.70 -0.43 16 44 H -0.29 -0.58 7.11 99.48 0.71 0.13 16 45 H 0.14 0.01 8.06 -2.91 -0.02 -0.01 16 46 H 0.15 -0.17 8.06 -2.91 -0.02 -0.20 16 47 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 48 H 0.09 -0.16 7.89 -2.39 -0.02 -0.18 16 Total: 0.00 -27.45 404.25 1.73 -25.72 By element: Atomic # 1 Polarization: -16.38 SS G_CDS: -0.43 Total: -16.81 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 4.62 Total: 9.69 kcal Atomic # 7 Polarization: 1.12 SS G_CDS: -2.34 Total: -1.22 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -2.17 Total: -16.90 kcal Atomic # 14 Polarization: -2.53 SS G_CDS: 2.05 Total: -0.49 kcal Total: -27.45 1.73 -25.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17523010_12360594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.981 kcal (2) G-P(sol) polarization free energy of solvation -27.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds