Wall clock time and date at job start Tue Mar 9 2021 13:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34221 * 117.00247 * 2 1 4 4 O 1.20823 * 119.99936 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00074 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.47178 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47000 * 179.97438 * 6 5 3 8 8 H 1.09006 * 112.90484 * 43.75696 * 7 6 5 9 9 C 1.53786 * 113.61346 * 175.00325 * 7 6 5 10 10 C 1.53773 * 87.08335 * 139.98483 * 9 7 6 11 11 H 1.08999 * 113.61740 * 219.93952 * 10 9 7 12 12 N 1.46505 * 113.61666 * 89.11551 * 10 9 7 13 13 C 1.34773 * 119.99956 * 155.00118 * 12 10 9 14 14 O 1.21591 * 120.00096 * 0.02562 * 13 12 10 15 15 C 1.47542 * 119.99544 * 180.02562 * 13 12 10 16 16 C 1.40141 * 120.18475 * 179.97438 * 15 13 12 17 17 O 1.35647 * 120.15399 * 0.04076 * 16 15 13 18 18 C 1.42903 * 116.99890 * 180.02562 * 17 16 15 19 19 C 1.38717 * 119.69483 * 180.02562 * 16 15 13 20 20 C 1.38053 * 120.08302 * 359.74396 * 19 16 15 21 21 C 1.38551 * 120.39050 * 0.50875 * 20 19 16 22 22 C 1.50701 * 119.84948 * 179.76257 * 21 20 19 23 23 O 1.42896 * 109.47417 * 244.72900 * 22 21 20 24 24 Si 1.86301 * 109.47149 * 4.72916 * 22 21 20 25 25 C 1.37786 * 120.30127 * 359.49316 * 21 20 19 26 26 C 1.53776 * 113.62121 * 272.49969 * 7 6 5 27 27 H 1.08996 * 109.47162 * 299.99943 * 1 2 3 28 28 H 1.09000 * 109.47064 * 60.00119 * 1 2 3 29 29 H 1.08995 * 109.47173 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46986 * 60.00334 * 5 3 2 31 31 H 1.08992 * 109.46973 * 299.99884 * 5 3 2 32 32 H 1.09009 * 109.46728 * 60.00252 * 6 5 3 33 33 H 1.08991 * 109.47458 * 300.00430 * 6 5 3 34 34 H 1.09004 * 113.61259 * 25.43553 * 9 7 6 35 35 H 1.09003 * 113.69100 * 254.54313 * 9 7 6 36 36 H 0.96999 * 119.99836 * 334.99937 * 12 10 9 37 37 H 1.09001 * 109.47180 * 60.00137 * 18 17 16 38 38 H 1.09001 * 109.47129 * 180.02562 * 18 17 16 39 39 H 1.09005 * 109.47149 * 299.99776 * 18 17 16 40 40 H 1.07993 * 119.95426 * 179.97438 * 19 16 15 41 41 H 1.07999 * 119.80590 * 180.27762 * 20 19 16 42 42 H 1.09002 * 109.47060 * 124.72927 * 22 21 20 43 43 H 0.96708 * 114.00101 * 59.99427 * 23 22 21 44 44 H 1.48493 * 110.00101 * 179.97438 * 24 22 21 45 45 H 1.48502 * 109.99925 * 301.31801 * 24 22 21 46 46 H 1.08000 * 120.04693 * 180.27683 * 25 21 20 47 47 H 1.09002 * 113.61714 * 105.46495 * 26 7 6 48 48 H 1.09006 * 113.61193 * 334.57476 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0002 2.7420 -0.0011 7 6 5.5281 2.8220 -0.0011 8 1 5.9897 2.1196 -0.6952 9 6 6.0699 4.2559 -0.1243 10 6 7.1385 3.8569 0.9069 11 1 7.3512 4.6358 1.6392 12 7 8.3508 3.2931 0.3077 13 6 9.5240 3.3639 0.9671 14 8 9.5764 3.8952 2.0596 15 6 10.7449 2.7967 0.3634 16 6 11.9671 2.8686 1.0453 17 8 12.0333 3.4595 2.2645 18 6 13.3132 3.4959 2.8991 19 6 13.1087 2.3324 0.4679 20 6 13.0386 1.7263 -0.7705 21 6 11.8332 1.6579 -1.4501 22 6 11.7716 0.9983 -2.8037 23 8 11.4280 1.9710 -3.7924 24 14 13.4327 0.2593 -3.2105 25 6 10.6893 2.1853 -0.8916 26 6 6.1466 2.7933 1.4066 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9557 0.7808 -0.8909 31 1 3.9564 0.7805 0.8891 32 1 3.6108 3.2363 0.8890 33 1 3.6102 3.2359 -0.8909 34 1 5.3776 5.0167 0.2364 35 1 6.4776 4.4870 -1.1084 36 1 8.3089 2.8689 -0.5636 37 1 14.0153 4.0430 2.2699 38 1 13.2260 3.9938 3.8648 39 1 13.6746 2.4782 3.0469 40 1 14.0528 2.3858 0.9896 41 1 13.9294 1.3064 -1.2138 42 1 11.0173 0.2115 -2.7905 43 1 12.0569 2.7026 -3.8598 44 1 13.3851 -0.3948 -4.5427 45 1 14.4753 1.3168 -3.2004 46 1 9.7510 2.1257 -1.4230 47 1 6.6159 1.8422 1.6581 48 1 5.4752 3.1542 2.1859 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17523010_12496546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:44 Heat of formation + Delta-G solvation = -135.283641 kcal Electronic energy + Delta-G solvation = -30546.774480 eV Core-core repulsion = 26148.905374 eV Total energy + Delta-G solvation = -4397.869105 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.87486 -41.52647 -40.78584 -39.25194 -39.18438 -37.63034 -37.21146 -35.11539 -33.54429 -32.25171 -31.78564 -29.12052 -28.51563 -26.99166 -26.60854 -26.14589 -25.23643 -23.43809 -22.56149 -21.68298 -21.46244 -20.26347 -19.44278 -18.63493 -18.40465 -18.16114 -17.68581 -17.51759 -17.21636 -16.86681 -16.77932 -16.16860 -16.08699 -15.89838 -15.83643 -15.71062 -15.19320 -15.01788 -14.63073 -14.52172 -14.42989 -14.35361 -14.10860 -13.57788 -13.50733 -13.39415 -13.31401 -13.09351 -13.01564 -12.63328 -12.42817 -12.20062 -12.12427 -12.03571 -11.86956 -11.82712 -11.66218 -11.62733 -11.26973 -11.08280 -11.01947 -10.53300 -10.25909 -9.98788 -9.29008 -4.87775 -0.25604 0.22811 1.15972 1.35345 1.62814 1.76935 1.78834 2.00820 2.07347 2.27848 2.68165 3.43600 3.51881 3.53867 3.58596 3.65651 3.72849 3.75287 3.88544 3.89750 4.00066 4.16304 4.21532 4.25304 4.28637 4.30878 4.32404 4.36282 4.40866 4.55057 4.61061 4.64608 4.68882 4.70366 4.73341 4.79546 4.82535 4.88626 4.92387 4.95014 5.05811 5.11387 5.15468 5.25630 5.28781 5.33416 5.42787 5.57743 5.66640 6.30947 6.53222 6.53474 6.69865 7.23000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.455 3.545 4 O -0.546 6.546 5 C -0.108 4.108 6 C -0.095 4.095 7 C -0.094 4.094 8 H 0.113 0.887 9 C -0.134 4.134 10 C 0.110 3.890 11 H 0.076 0.924 12 N -0.697 5.697 13 C 0.558 3.442 14 O -0.566 6.566 15 C -0.197 4.197 16 C 0.171 3.829 17 O -0.314 6.314 18 C 0.011 3.989 19 C -0.213 4.213 20 C -0.044 4.044 21 C -0.164 4.164 22 C -0.071 4.071 23 O -0.546 6.546 24 Si 0.759 3.241 25 C -0.014 4.014 26 C -0.145 4.145 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.412 0.588 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.161 0.839 41 H 0.155 0.845 42 H 0.133 0.867 43 H 0.386 0.614 44 H -0.306 1.306 45 H -0.281 1.281 46 H 0.153 0.847 47 H 0.071 0.929 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.070 -5.787 -2.163 7.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C 0.300 3.700 4 O -0.436 6.436 5 C -0.145 4.145 6 C -0.132 4.132 7 C -0.113 4.113 8 H 0.131 0.869 9 C -0.172 4.172 10 C 0.005 3.995 11 H 0.095 0.905 12 N -0.350 5.350 13 C 0.347 3.653 14 O -0.445 6.445 15 C -0.200 4.200 16 C 0.123 3.877 17 O -0.225 6.225 18 C -0.083 4.083 19 C -0.231 4.231 20 C -0.062 4.062 21 C -0.164 4.164 22 C -0.180 4.180 23 O -0.354 6.354 24 Si 0.666 3.334 25 C -0.033 4.033 26 C -0.184 4.184 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.250 0.750 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.178 0.822 41 H 0.173 0.827 42 H 0.151 0.849 43 H 0.235 0.765 44 H -0.235 1.235 45 H -0.208 1.208 46 H 0.170 0.830 47 H 0.090 0.910 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.882 -5.419 -1.870 6.923 hybrid contribution -0.364 1.275 -0.502 1.418 sum 3.519 -4.144 -2.372 5.931 Atomic orbital electron populations 1.23483 0.75301 1.05483 1.02284 1.86514 1.24633 1.33522 1.83743 1.24628 0.93660 0.80794 0.70909 1.90674 1.68427 1.37499 1.47037 1.21558 0.84747 1.00383 1.07844 1.21356 0.94919 0.93891 1.03073 1.22558 0.93908 0.97459 0.97326 0.86878 1.23343 0.96643 0.97744 0.99495 1.21851 0.83789 0.96829 0.97040 0.90539 1.45446 1.06737 1.60129 1.22707 1.18316 0.83792 0.78647 0.84524 1.90813 1.86325 1.45424 1.21952 1.19401 0.91872 1.10669 0.98097 1.19434 0.93525 0.89972 0.84814 1.86338 1.34630 1.72630 1.28930 1.23445 0.82736 1.03503 0.98609 1.21457 0.98157 1.04933 0.98576 1.21312 0.97781 0.93868 0.93198 1.20162 0.93492 1.04367 0.98402 1.25085 1.13906 0.94383 0.84675 1.86582 1.53112 1.37811 1.57941 0.94173 0.73203 0.83035 0.83029 1.21119 0.99648 0.91704 0.90792 1.23513 0.97804 0.99456 0.97625 0.92284 0.92156 0.85418 0.85182 0.85937 0.91994 0.91401 0.88511 0.89779 0.74965 0.91041 0.87516 0.90621 0.82163 0.82750 0.84949 0.76466 1.23451 1.20786 0.82975 0.91044 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.18 16 2 O -0.37 -1.06 10.56 -51.33 -0.54 -1.60 16 3 C 0.45 1.65 7.96 71.24 0.57 2.22 16 4 O -0.55 -5.86 15.73 21.97 0.35 -5.51 16 5 C -0.11 0.47 5.80 29.85 0.17 0.64 16 6 C -0.09 0.28 4.34 30.60 0.13 0.41 16 7 C -0.09 0.53 3.53 -10.27 -0.04 0.49 16 8 H 0.11 -1.04 8.13 -2.38 -0.02 -1.06 16 9 C -0.13 0.46 7.39 31.12 0.23 0.69 16 10 C 0.11 0.13 4.32 45.51 0.20 0.33 16 11 H 0.08 0.54 7.46 -2.39 -0.02 0.52 16 12 N -0.70 -0.65 5.21 -443.20 -2.31 -2.96 16 13 C 0.56 4.70 7.76 86.70 0.67 5.37 16 14 O -0.57 -10.00 14.76 16.92 0.25 -9.75 16 15 C -0.20 -0.86 5.89 -20.01 -0.12 -0.98 16 16 C 0.17 0.83 6.70 22.85 0.15 0.98 16 17 O -0.31 -2.63 8.57 -68.70 -0.59 -3.22 16 18 C 0.01 -0.02 9.81 113.37 1.11 1.10 16 19 C -0.21 0.39 9.03 22.34 0.20 0.60 16 20 C -0.04 0.20 8.65 22.30 0.19 0.40 16 21 C -0.16 0.65 5.35 -19.90 -0.11 0.55 16 22 C -0.07 0.39 2.79 71.24 0.20 0.59 16 23 O -0.55 1.24 12.83 -148.98 -1.91 -0.67 16 24 Si 0.76 -4.34 29.86 68.60 2.05 -2.29 16 25 C -0.01 0.03 9.16 22.52 0.21 0.23 16 26 C -0.15 0.27 7.43 31.12 0.23 0.50 16 27 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 28 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 29 H 0.13 -0.78 8.14 -2.39 -0.02 -0.80 16 30 H 0.13 -1.15 8.14 -2.39 -0.02 -1.17 16 31 H 0.12 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H 0.06 0.01 7.80 -2.38 -0.02 -0.01 16 33 H 0.07 -0.06 8.10 -2.39 -0.02 -0.08 16 34 H 0.10 -0.28 8.10 -2.39 -0.02 -0.30 16 35 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.41 -2.17 6.73 -92.71 -0.62 -2.79 16 37 H 0.07 -0.33 7.66 -2.39 -0.02 -0.35 16 38 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.08 -0.40 7.66 -2.38 -0.02 -0.42 16 40 H 0.16 -1.08 6.30 -2.91 -0.02 -1.10 16 41 H 0.16 -1.42 4.81 -2.91 -0.01 -1.43 16 42 H 0.13 -1.06 7.96 -2.39 -0.02 -1.08 16 43 H 0.39 -2.72 8.70 -74.05 -0.64 -3.37 16 44 H -0.31 -0.90 7.11 99.48 0.71 -0.19 16 45 H -0.28 0.60 7.01 99.48 0.70 1.30 16 46 H 0.15 -1.00 6.40 -2.91 -0.02 -1.02 16 47 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.09 -0.11 7.90 -2.38 -0.02 -0.13 16 Total: 0.00 -28.13 396.95 2.26 -25.87 By element: Atomic # 1 Polarization: -14.94 SS G_CDS: -0.24 Total: -15.18 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 5.21 Total: 15.30 kcal Atomic # 7 Polarization: -0.65 SS G_CDS: -2.31 Total: -2.96 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -2.45 Total: -20.74 kcal Atomic # 14 Polarization: -4.34 SS G_CDS: 2.05 Total: -2.29 kcal Total: -28.13 2.26 -25.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17523010_12496546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.416 kcal (2) G-P(sol) polarization free energy of solvation -28.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds