Wall clock time and date at job start Tue Mar 9 2021 13:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86304 * 109.46933 * 2 1 4 4 C 1.86294 * 109.47253 * 239.99790 * 2 1 3 5 5 C 1.86300 * 109.46870 * 119.99632 * 2 1 3 6 6 C 1.53040 * 109.49731 * 179.84016 * 5 2 1 7 7 C 1.53039 * 109.54188 * 178.68422 * 6 5 2 8 8 C 1.52765 * 109.37902 * 61.23734 * 7 6 5 9 9 N 1.46926 * 109.00888 * 305.58925 * 8 7 6 10 10 C 1.34778 * 120.63042 * 233.58221 * 9 8 7 11 11 O 1.21279 * 120.00103 * 179.72288 * 10 9 8 12 12 C 1.50704 * 119.99785 * 359.72732 * 10 9 8 13 13 O 1.42899 * 109.46831 * 179.97438 * 12 10 9 14 14 C 1.35922 * 117.00139 * 179.97438 * 13 12 10 15 15 C 1.38680 * 120.05514 * 0.02562 * 14 13 12 16 16 C 1.38190 * 119.95373 * 179.97438 * 15 14 13 17 17 C 1.38235 * 120.06803 * 359.96972 * 16 15 14 18 18 C 1.50707 * 119.93874 * 180.02562 * 17 16 15 19 19 O 1.42908 * 109.47162 * 300.00360 * 18 17 16 20 20 Si 1.86293 * 109.47230 * 180.02562 * 18 17 16 21 21 H 1.48499 * 109.47226 * 59.99837 * 20 18 17 22 22 H 1.48495 * 109.47347 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47082 * 299.99869 * 20 18 17 24 24 C 1.38288 * 120.12278 * 359.79791 * 17 16 15 25 25 C 1.38193 * 120.04338 * 0.45647 * 24 17 16 26 26 Br 1.89100 * 120.03831 * 179.79447 * 25 24 17 27 27 C 1.46927 * 118.73942 * 53.31524 * 9 8 7 28 28 H 1.08996 * 109.47255 * 300.00336 * 1 2 3 29 29 H 1.09006 * 109.47138 * 60.00103 * 1 2 3 30 30 H 1.08999 * 109.47183 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46545 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46691 * 299.99589 * 3 2 1 33 33 H 1.08996 * 109.47424 * 59.99767 * 3 2 1 34 34 H 1.09005 * 109.46934 * 300.00047 * 4 2 1 35 35 H 1.09006 * 109.46962 * 59.99999 * 4 2 1 36 36 H 1.08996 * 109.46996 * 180.02562 * 4 2 1 37 37 H 1.09004 * 109.52551 * 299.92135 * 5 2 1 38 38 H 1.09006 * 109.45614 * 298.70703 * 6 5 2 39 39 H 1.08999 * 109.46218 * 58.65914 * 6 5 2 40 40 H 1.08997 * 109.49899 * 181.31210 * 7 6 5 41 41 H 1.08996 * 109.49927 * 301.41736 * 7 6 5 42 42 H 1.09003 * 109.50929 * 185.70871 * 8 7 6 43 43 H 1.08995 * 109.43324 * 65.42891 * 8 7 6 44 44 H 1.09001 * 109.47440 * 59.99569 * 12 10 9 45 45 H 1.09001 * 109.46779 * 299.99236 * 12 10 9 46 46 H 1.08003 * 120.02118 * 359.97438 * 15 14 13 47 47 H 1.07996 * 119.96323 * 179.97438 * 16 15 14 48 48 H 1.08999 * 109.47110 * 60.00344 * 18 17 16 49 49 H 0.96695 * 113.99797 * 299.99979 * 19 18 17 50 50 H 1.07997 * 119.97848 * 180.25137 * 24 17 16 51 51 H 1.08998 * 109.58555 * 66.42329 * 27 9 8 52 52 H 1.08997 * 109.58669 * 186.85597 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5210 5 6 2.4840 -0.8781 1.5212 6 6 4.0143 -0.8820 1.5199 7 6 4.5256 -1.5743 2.7853 8 6 4.0380 -3.0219 2.8034 9 7 2.5763 -3.0365 2.6558 10 6 1.8026 -3.6877 3.5467 11 8 0.5968 -3.6881 3.4167 12 6 2.4358 -4.4153 4.7046 13 8 1.4160 -5.0209 5.5016 14 6 1.8209 -5.7217 6.5936 15 6 3.1714 -5.8237 6.8920 16 6 3.5807 -6.5363 8.0030 17 6 2.6453 -7.1467 8.8175 18 6 3.0949 -7.9226 10.0288 19 8 3.9483 -8.9931 9.6190 20 14 1.6071 -8.6173 10.9087 21 1 0.8652 -9.5186 9.9908 22 1 2.0499 -9.3812 12.1025 23 1 0.7198 -7.5051 11.3345 24 6 1.2976 -7.0429 8.5255 25 6 0.8832 -6.3360 7.4128 26 35 -0.9594 -6.1989 7.0104 27 6 1.9736 -2.3226 1.5218 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5740 1.7564 -0.0005 32 1 2.1206 2.2703 -0.8901 33 1 2.1206 2.2704 0.8899 34 1 2.1207 -1.9060 -1.5210 35 1 2.1207 -0.3644 -2.4111 36 1 3.5740 -0.8786 -1.5208 37 1 2.1222 -0.3641 2.4118 38 1 4.3753 -1.4177 0.6418 39 1 4.3801 0.1445 1.4945 40 1 5.6154 -1.5560 2.7950 41 1 4.1447 -1.0538 3.6640 42 1 4.3144 -3.4873 3.7496 43 1 4.4941 -3.5685 1.9781 44 1 3.0003 -3.7087 5.3130 45 1 3.1071 -5.1861 4.3259 46 1 3.9027 -5.3466 6.2563 47 1 4.6323 -6.6162 8.2352 48 1 3.6397 -7.2611 10.7023 49 1 3.5283 -9.6224 9.0168 50 1 0.5687 -7.5173 9.1657 51 1 2.2580 -2.8110 0.5898 52 1 0.8883 -2.3266 1.6226 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17567694_6201210.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:17:07 Heat of formation + Delta-G solvation = -115.561122 kcal Electronic energy + Delta-G solvation = -31194.206527 eV Core-core repulsion = 26942.758454 eV Total energy + Delta-G solvation = -4251.448073 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 429.093 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.79656 -40.97828 -39.35025 -38.25416 -37.26362 -34.13940 -33.46937 -32.52691 -32.13208 -30.45084 -29.71383 -29.34863 -28.57322 -28.50457 -26.58910 -26.08438 -24.27073 -23.86278 -22.51086 -21.82610 -20.14831 -19.69023 -18.55032 -17.98859 -17.59291 -17.51497 -16.73740 -16.61307 -16.27751 -15.97682 -15.73371 -15.62822 -15.29907 -15.07876 -14.96816 -14.81803 -14.52906 -14.33293 -14.25159 -14.03968 -13.95494 -13.86480 -13.74810 -13.68087 -13.46322 -13.32780 -13.26305 -13.15007 -12.76701 -12.49613 -12.34640 -12.31548 -12.25403 -12.15602 -12.01558 -11.80148 -11.72163 -11.69993 -11.05619 -11.01865 -10.88168 -10.85483 -10.51950 -10.43248 -10.01627 -9.69607 -9.30674 -0.06848 0.03897 0.70884 1.08610 1.24952 1.39317 1.45988 1.48530 1.66913 1.79472 1.79969 1.87457 2.30584 2.34874 2.55483 3.19169 3.36314 3.44291 3.55860 3.66838 3.71691 3.73225 3.80967 3.83959 3.85365 3.98445 3.98848 4.22420 4.27254 4.37402 4.40841 4.44857 4.55499 4.63250 4.63664 4.66947 4.67734 4.69160 4.73268 4.74360 4.75154 4.75560 4.82492 4.95949 4.96209 5.01404 5.22487 5.24544 5.31576 5.40409 5.42861 5.48852 5.54309 5.99314 6.23828 6.46042 7.06085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.018 2.982 3 C -0.448 4.448 4 C -0.450 4.450 5 C -0.395 4.395 6 C -0.106 4.106 7 C -0.135 4.135 8 C 0.103 3.897 9 N -0.606 5.606 10 C 0.517 3.483 11 O -0.509 6.509 12 C 0.039 3.961 13 O -0.274 6.274 14 C 0.162 3.838 15 C -0.205 4.205 16 C -0.032 4.032 17 C -0.153 4.153 18 C -0.072 4.072 19 O -0.538 6.538 20 Si 0.934 3.066 21 H -0.247 1.247 22 H -0.249 1.249 23 H -0.246 1.246 24 C -0.057 4.057 25 C -0.119 4.119 26 Br -0.025 7.025 27 C 0.126 3.874 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.121 0.879 49 H 0.378 0.622 50 H 0.136 0.864 51 H 0.072 0.928 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.580 1.556 -1.462 6.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.212 2.788 3 C -0.556 4.556 4 C -0.557 4.557 5 C -0.459 4.459 6 C -0.144 4.144 7 C -0.173 4.173 8 C -0.020 4.020 9 N -0.343 5.343 10 C 0.303 3.697 11 O -0.383 6.383 12 C -0.040 4.040 13 O -0.185 6.185 14 C 0.113 3.887 15 C -0.224 4.224 16 C -0.050 4.050 17 C -0.154 4.154 18 C -0.183 4.183 19 O -0.343 6.343 20 Si 0.757 3.243 21 H -0.170 1.170 22 H -0.173 1.173 23 H -0.170 1.170 24 C -0.077 4.077 25 C -0.199 4.199 26 Br 0.061 6.939 27 C 0.005 3.995 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.156 0.844 47 H 0.158 0.842 48 H 0.139 0.861 49 H 0.225 0.775 50 H 0.154 0.846 51 H 0.090 0.910 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.714 1.587 -0.914 5.057 hybrid contribution 0.764 0.029 -0.452 0.888 sum 5.478 1.616 -1.366 5.872 Atomic orbital electron populations 1.26165 1.20642 1.04703 1.04537 0.79087 0.67018 0.66970 0.65688 1.26118 1.06197 1.18708 1.04547 1.26164 1.06221 1.08065 1.15261 1.26522 1.00497 1.02244 1.16653 1.21197 0.94210 1.01183 0.97781 1.21850 1.00956 0.95137 0.99406 1.21743 0.79611 0.98124 1.02495 1.48049 1.06924 1.52337 1.26956 1.19906 0.87334 0.79622 0.82857 1.90788 1.13748 1.59805 1.73972 1.22622 0.90750 0.98139 0.92482 1.86285 1.33408 1.63770 1.35079 1.18642 0.92067 0.91204 0.86751 1.21291 0.93601 1.06023 1.01499 1.20933 1.00235 0.92050 0.91817 1.20227 0.92544 1.02934 0.99719 1.24852 1.04734 0.91312 0.97391 1.86516 1.41086 1.37925 1.68762 0.85884 0.76415 0.81359 0.80690 1.17045 1.17274 1.17004 1.20885 0.95890 0.96360 0.94568 1.20971 0.91623 1.07581 0.99721 1.96809 1.04825 1.97694 1.94598 1.21419 0.99816 0.90550 0.87719 0.91182 0.91158 0.91077 0.91197 0.91125 0.91233 0.91203 0.91111 0.91172 0.89412 0.91327 0.91109 0.90438 0.91389 0.90218 0.90615 0.88666 0.88625 0.84358 0.84240 0.86095 0.77512 0.84627 0.91003 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.53 8.65 101.05 0.87 1.40 16 2 Si 1.02 -3.30 10.67 -169.99 -1.81 -5.11 16 3 C -0.45 1.00 8.65 101.05 0.87 1.87 16 4 C -0.45 1.13 8.61 101.05 0.87 2.00 16 5 C -0.40 0.95 1.88 -26.61 -0.05 0.90 16 6 C -0.11 0.36 4.54 -26.69 -0.12 0.23 16 7 C -0.14 0.49 6.07 -26.83 -0.16 0.33 16 8 C 0.10 -0.36 6.31 -3.93 -0.02 -0.39 16 9 N -0.61 0.27 2.98 -173.03 -0.52 -0.25 16 10 C 0.52 1.14 7.78 -10.98 -0.09 1.06 16 11 O -0.51 -3.49 15.91 -14.35 -0.23 -3.72 16 12 C 0.04 -0.02 3.57 36.01 0.13 0.11 16 13 O -0.27 -0.86 9.01 -39.41 -0.35 -1.21 16 14 C 0.16 0.32 6.68 -39.20 -0.26 0.06 16 15 C -0.20 0.15 9.04 -39.44 -0.36 -0.21 16 16 C -0.03 0.03 9.60 -39.60 -0.38 -0.35 16 17 C -0.15 0.04 5.39 -104.60 -0.56 -0.52 16 18 C -0.07 0.09 2.82 36.01 0.10 0.19 16 19 O -0.54 0.41 12.77 -35.23 -0.45 -0.04 16 20 Si 0.93 -0.65 25.06 -169.99 -4.26 -4.91 16 21 H -0.25 0.08 7.11 56.52 0.40 0.48 16 22 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 23 H -0.25 0.00 7.11 56.52 0.40 0.40 16 24 C -0.06 -0.07 8.40 -39.58 -0.33 -0.40 16 25 C -0.12 -0.33 6.24 -39.38 -0.25 -0.57 16 26 Br -0.02 -0.10 33.16 -68.01 -2.26 -2.35 16 27 C 0.13 -0.09 5.09 -3.71 -0.02 -0.11 16 28 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 29 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 31 H 0.07 -0.17 7.74 -51.93 -0.40 -0.58 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 33 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 34 H 0.07 -0.16 7.60 -51.93 -0.39 -0.56 16 35 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 36 H 0.07 -0.20 7.84 -51.93 -0.41 -0.60 16 37 H 0.09 -0.13 7.97 -51.93 -0.41 -0.54 16 38 H 0.07 -0.27 7.88 -51.93 -0.41 -0.68 16 39 H 0.07 -0.26 7.71 -51.93 -0.40 -0.66 16 40 H 0.08 -0.36 8.14 -51.93 -0.42 -0.79 16 41 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 42 H 0.08 -0.42 5.93 -51.93 -0.31 -0.73 16 43 H 0.08 -0.32 8.14 -51.93 -0.42 -0.75 16 44 H 0.10 -0.28 7.20 -51.93 -0.37 -0.65 16 45 H 0.10 -0.29 7.47 -51.93 -0.39 -0.68 16 46 H 0.14 -0.50 6.30 -52.48 -0.33 -0.83 16 47 H 0.14 -0.35 8.06 -52.49 -0.42 -0.77 16 48 H 0.12 -0.28 7.96 -51.93 -0.41 -0.69 16 49 H 0.38 -1.40 8.70 45.56 0.40 -1.00 16 50 H 0.14 0.05 4.87 -52.49 -0.26 -0.21 16 51 H 0.07 -0.14 7.44 -51.93 -0.39 -0.52 16 52 H 0.10 0.11 6.95 -51.93 -0.36 -0.25 16 LS Contribution 430.03 15.07 6.48 6.48 Total: 0.00 -8.59 430.03 -10.97 -19.56 By element: Atomic # 1 Polarization: -6.23 SS G_CDS: -7.82 Total: -14.05 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 0.24 Total: 5.61 kcal Atomic # 7 Polarization: 0.27 SS G_CDS: -0.52 Total: -0.25 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -1.03 Total: -4.97 kcal Atomic # 14 Polarization: -3.95 SS G_CDS: -6.07 Total: -10.02 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -2.26 Total: -2.35 kcal Total LS contribution 6.48 Total: 6.48 kcal Total: -8.59 -10.97 -19.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567694_6201210.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.000 kcal (2) G-P(sol) polarization free energy of solvation -8.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds