Wall clock time and date at job start Tue Mar 9 2021 13:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86304 * 109.46933 * 2 1 4 4 C 1.86294 * 109.47253 * 239.99790 * 2 1 3 5 5 C 1.86300 * 109.46870 * 119.99632 * 2 1 3 6 6 C 1.53040 * 109.49731 * 179.84016 * 5 2 1 7 7 C 1.53039 * 109.54188 * 178.68422 * 6 5 2 8 8 C 1.52765 * 109.37902 * 61.23734 * 7 6 5 9 9 N 1.46926 * 109.00888 * 305.58925 * 8 7 6 10 10 C 1.34778 * 120.63042 * 233.58221 * 9 8 7 11 11 O 1.21279 * 120.00103 * 179.72288 * 10 9 8 12 12 C 1.50704 * 119.99785 * 359.72732 * 10 9 8 13 13 O 1.42899 * 109.46831 * 179.97438 * 12 10 9 14 14 C 1.35922 * 117.00139 * 179.97438 * 13 12 10 15 15 C 1.38680 * 120.05514 * 0.02562 * 14 13 12 16 16 C 1.38190 * 119.95373 * 179.97438 * 15 14 13 17 17 C 1.38235 * 120.06803 * 359.96972 * 16 15 14 18 18 C 1.50707 * 119.93874 * 180.02562 * 17 16 15 19 19 O 1.42908 * 109.47162 * 300.00360 * 18 17 16 20 20 Si 1.86293 * 109.47230 * 180.02562 * 18 17 16 21 21 H 1.48499 * 109.47226 * 59.99837 * 20 18 17 22 22 H 1.48495 * 109.47347 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47082 * 299.99869 * 20 18 17 24 24 C 1.38288 * 120.12278 * 359.79791 * 17 16 15 25 25 C 1.38193 * 120.04338 * 0.45647 * 24 17 16 26 26 Br 1.89100 * 120.03831 * 179.79447 * 25 24 17 27 27 C 1.46927 * 118.73942 * 53.31524 * 9 8 7 28 28 H 1.08996 * 109.47255 * 300.00336 * 1 2 3 29 29 H 1.09006 * 109.47138 * 60.00103 * 1 2 3 30 30 H 1.08999 * 109.47183 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46545 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46691 * 299.99589 * 3 2 1 33 33 H 1.08996 * 109.47424 * 59.99767 * 3 2 1 34 34 H 1.09005 * 109.46934 * 300.00047 * 4 2 1 35 35 H 1.09006 * 109.46962 * 59.99999 * 4 2 1 36 36 H 1.08996 * 109.46996 * 180.02562 * 4 2 1 37 37 H 1.09004 * 109.52551 * 299.92135 * 5 2 1 38 38 H 1.09006 * 109.45614 * 298.70703 * 6 5 2 39 39 H 1.08999 * 109.46218 * 58.65914 * 6 5 2 40 40 H 1.08997 * 109.49899 * 181.31210 * 7 6 5 41 41 H 1.08996 * 109.49927 * 301.41736 * 7 6 5 42 42 H 1.09003 * 109.50929 * 185.70871 * 8 7 6 43 43 H 1.08995 * 109.43324 * 65.42891 * 8 7 6 44 44 H 1.09001 * 109.47440 * 59.99569 * 12 10 9 45 45 H 1.09001 * 109.46779 * 299.99236 * 12 10 9 46 46 H 1.08003 * 120.02118 * 359.97438 * 15 14 13 47 47 H 1.07996 * 119.96323 * 179.97438 * 16 15 14 48 48 H 1.08999 * 109.47110 * 60.00344 * 18 17 16 49 49 H 0.96695 * 113.99797 * 299.99979 * 19 18 17 50 50 H 1.07997 * 119.97848 * 180.25137 * 24 17 16 51 51 H 1.08998 * 109.58555 * 66.42329 * 27 9 8 52 52 H 1.08997 * 109.58669 * 186.85597 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5210 5 6 2.4840 -0.8781 1.5212 6 6 4.0143 -0.8820 1.5199 7 6 4.5256 -1.5743 2.7853 8 6 4.0380 -3.0219 2.8034 9 7 2.5763 -3.0365 2.6558 10 6 1.8026 -3.6877 3.5467 11 8 0.5968 -3.6881 3.4167 12 6 2.4358 -4.4153 4.7046 13 8 1.4160 -5.0209 5.5016 14 6 1.8209 -5.7217 6.5936 15 6 3.1714 -5.8237 6.8920 16 6 3.5807 -6.5363 8.0030 17 6 2.6453 -7.1467 8.8175 18 6 3.0949 -7.9226 10.0288 19 8 3.9483 -8.9931 9.6190 20 14 1.6071 -8.6173 10.9087 21 1 0.8652 -9.5186 9.9908 22 1 2.0499 -9.3812 12.1025 23 1 0.7198 -7.5051 11.3345 24 6 1.2976 -7.0429 8.5255 25 6 0.8832 -6.3360 7.4128 26 35 -0.9594 -6.1989 7.0104 27 6 1.9736 -2.3226 1.5218 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5740 1.7564 -0.0005 32 1 2.1206 2.2703 -0.8901 33 1 2.1206 2.2704 0.8899 34 1 2.1207 -1.9060 -1.5210 35 1 2.1207 -0.3644 -2.4111 36 1 3.5740 -0.8786 -1.5208 37 1 2.1222 -0.3641 2.4118 38 1 4.3753 -1.4177 0.6418 39 1 4.3801 0.1445 1.4945 40 1 5.6154 -1.5560 2.7950 41 1 4.1447 -1.0538 3.6640 42 1 4.3144 -3.4873 3.7496 43 1 4.4941 -3.5685 1.9781 44 1 3.0003 -3.7087 5.3130 45 1 3.1071 -5.1861 4.3259 46 1 3.9027 -5.3466 6.2563 47 1 4.6323 -6.6162 8.2352 48 1 3.6397 -7.2611 10.7023 49 1 3.5283 -9.6224 9.0168 50 1 0.5687 -7.5173 9.1657 51 1 2.2580 -2.8110 0.5898 52 1 0.8883 -2.3266 1.6226 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567694_6201210.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:17:05 Heat of formation + Delta-G solvation = -109.820224 kcal Electronic energy + Delta-G solvation = -31193.957583 eV Core-core repulsion = 26942.758454 eV Total energy + Delta-G solvation = -4251.199129 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 429.093 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.80175 -40.96394 -39.30850 -38.25709 -37.20750 -34.06634 -33.50308 -32.37192 -32.05673 -30.49833 -29.64412 -29.23328 -28.43670 -28.32569 -26.51262 -25.95174 -24.14130 -23.75037 -22.47260 -21.70455 -20.03780 -19.67021 -18.48917 -17.94437 -17.56861 -17.53786 -16.69018 -16.55949 -16.19312 -15.91610 -15.70832 -15.41495 -15.19044 -15.06623 -14.82577 -14.69308 -14.50144 -14.22192 -14.10559 -13.98011 -13.84048 -13.77055 -13.63688 -13.52975 -13.41657 -13.20304 -13.11124 -13.00666 -12.56742 -12.42030 -12.32499 -12.26763 -12.16321 -12.04744 -11.90276 -11.78029 -11.70008 -11.52750 -11.25425 -11.05325 -10.75504 -10.71136 -10.44039 -10.28256 -10.03128 -9.64199 -9.33555 -0.06121 0.05683 0.59172 1.16026 1.31430 1.41323 1.42292 1.47952 1.85537 1.89367 1.96932 2.01443 2.38173 2.39389 2.71121 3.26557 3.46795 3.55337 3.71828 3.76533 3.94354 3.95751 3.97446 4.04102 4.05282 4.09192 4.18287 4.31478 4.47152 4.49309 4.60023 4.68371 4.71025 4.75087 4.76420 4.77525 4.83984 4.85603 4.86333 4.88364 4.89414 5.01289 5.03095 5.04593 5.23149 5.28266 5.28950 5.41322 5.48272 5.51280 5.56028 5.65468 5.70355 6.03793 6.29430 6.70331 7.02121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.477 4.477 2 Si 1.083 2.917 3 C -0.458 4.458 4 C -0.457 4.457 5 C -0.395 4.395 6 C -0.112 4.112 7 C -0.135 4.135 8 C 0.094 3.906 9 N -0.601 5.601 10 C 0.507 3.493 11 O -0.573 6.573 12 C 0.036 3.964 13 O -0.305 6.305 14 C 0.148 3.852 15 C -0.194 4.194 16 C -0.026 4.026 17 C -0.150 4.150 18 C -0.057 4.057 19 O -0.546 6.546 20 Si 0.951 3.049 21 H -0.257 1.257 22 H -0.267 1.267 23 H -0.261 1.261 24 C -0.068 4.068 25 C -0.141 4.141 26 Br -0.054 7.054 27 C 0.118 3.882 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.125 0.875 45 H 0.128 0.872 46 H 0.173 0.827 47 H 0.165 0.835 48 H 0.138 0.862 49 H 0.390 0.610 50 H 0.134 0.866 51 H 0.086 0.914 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.576 1.654 -1.679 10.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.582 4.582 2 Si 1.273 2.727 3 C -0.565 4.565 4 C -0.565 4.565 5 C -0.458 4.458 6 C -0.149 4.149 7 C -0.173 4.173 8 C -0.027 4.027 9 N -0.335 5.335 10 C 0.294 3.706 11 O -0.452 6.452 12 C -0.041 4.041 13 O -0.218 6.218 14 C 0.100 3.900 15 C -0.213 4.213 16 C -0.044 4.044 17 C -0.152 4.152 18 C -0.169 4.169 19 O -0.353 6.353 20 Si 0.777 3.223 21 H -0.181 1.181 22 H -0.192 1.192 23 H -0.185 1.185 24 C -0.087 4.087 25 C -0.221 4.221 26 Br 0.031 6.969 27 C -0.004 4.004 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.076 0.924 42 H 0.122 0.878 43 H 0.109 0.891 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.191 0.809 47 H 0.182 0.818 48 H 0.155 0.845 49 H 0.239 0.761 50 H 0.151 0.849 51 H 0.104 0.896 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.730 1.689 -1.140 8.964 hybrid contribution -0.469 -0.003 -0.392 0.611 sum 8.260 1.686 -1.532 8.569 Atomic orbital electron populations 1.26513 1.23838 1.03867 1.03989 0.78093 0.63956 0.65895 0.64727 1.26238 1.06873 1.19200 1.04233 1.26242 1.06969 1.07999 1.15243 1.26573 1.01783 1.00871 1.16555 1.21286 0.92887 1.02053 0.98672 1.21864 1.02021 0.94708 0.98680 1.22085 0.77287 0.98810 1.04520 1.48213 1.08329 1.50938 1.26028 1.20526 0.86839 0.79517 0.83680 1.90758 1.16430 1.62345 1.75645 1.22867 0.90228 0.99324 0.91672 1.86249 1.35434 1.64317 1.35789 1.18831 0.93066 0.91524 0.86616 1.21638 0.92780 1.05211 1.01654 1.21245 1.01167 0.90904 0.91104 1.20350 0.91957 1.02807 1.00082 1.24684 1.04024 0.91269 0.96948 1.86492 1.41392 1.38246 1.69185 0.85653 0.76618 0.80327 0.79685 1.18079 1.19189 1.18548 1.20943 0.96805 0.96650 0.94347 1.21117 0.90433 1.09441 1.01125 1.96759 1.07484 1.97853 1.94825 1.21494 0.98533 0.91967 0.88399 0.92133 0.91274 0.92070 0.90299 0.91359 0.91679 0.91345 0.91376 0.90127 0.90707 0.90102 0.90324 0.88525 0.92389 0.87789 0.89082 0.85733 0.85455 0.80936 0.81777 0.84474 0.76128 0.84851 0.89607 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 0.07 8.65 113.37 0.98 1.05 16 2 Si 1.08 -6.63 10.67 68.60 0.73 -5.90 16 3 C -0.46 2.17 8.65 113.37 0.98 3.15 16 4 C -0.46 2.58 8.61 113.37 0.98 3.55 16 5 C -0.39 1.81 1.88 30.67 0.06 1.87 16 6 C -0.11 0.93 4.54 30.62 0.14 1.07 16 7 C -0.13 1.27 6.07 30.53 0.19 1.46 16 8 C 0.09 -0.88 6.31 86.22 0.54 -0.34 16 9 N -0.60 0.63 2.98 -819.73 -2.44 -1.81 16 10 C 0.51 2.65 7.78 87.66 0.68 3.33 16 11 O -0.57 -9.59 15.91 16.01 0.25 -9.33 16 12 C 0.04 -0.07 3.57 71.24 0.25 0.18 16 13 O -0.31 -2.07 9.01 -73.64 -0.66 -2.73 16 14 C 0.15 0.54 6.68 22.52 0.15 0.69 16 15 C -0.19 0.78 9.04 22.36 0.20 0.98 16 16 C -0.03 0.12 9.60 22.26 0.21 0.34 16 17 C -0.15 0.26 5.39 -19.85 -0.11 0.16 16 18 C -0.06 0.22 2.82 71.24 0.20 0.42 16 19 O -0.55 1.82 12.77 -148.98 -1.90 -0.08 16 20 Si 0.95 -0.81 25.06 68.60 1.72 0.91 16 21 H -0.26 -0.12 7.11 99.48 0.71 0.58 16 22 H -0.27 -0.54 7.11 99.48 0.71 0.16 16 23 H -0.26 -0.36 7.11 99.48 0.71 0.35 16 24 C -0.07 -0.19 8.40 22.27 0.19 0.00 16 25 C -0.14 -0.92 6.24 22.40 0.14 -0.78 16 26 Br -0.05 -0.57 33.16 -20.37 -0.68 -1.24 16 27 C 0.12 -0.06 5.09 86.36 0.44 0.38 16 28 H 0.06 0.08 7.96 -2.39 -0.02 0.07 16 29 H 0.07 -0.03 7.96 -2.38 -0.02 -0.05 16 30 H 0.06 0.10 7.96 -2.39 -0.02 0.08 16 31 H 0.08 -0.49 7.74 -2.39 -0.02 -0.51 16 32 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 33 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 34 H 0.07 -0.34 7.60 -2.38 -0.02 -0.36 16 35 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 36 H 0.08 -0.59 7.84 -2.39 -0.02 -0.61 16 37 H 0.07 -0.14 7.97 -2.39 -0.02 -0.16 16 38 H 0.08 -0.84 7.88 -2.38 -0.02 -0.86 16 39 H 0.08 -0.74 7.71 -2.39 -0.02 -0.76 16 40 H 0.10 -1.23 8.14 -2.39 -0.02 -1.25 16 41 H 0.06 -0.41 8.14 -2.39 -0.02 -0.42 16 42 H 0.10 -1.49 5.93 -2.39 -0.01 -1.50 16 43 H 0.09 -1.07 8.14 -2.39 -0.02 -1.09 16 44 H 0.13 -1.05 7.20 -2.39 -0.02 -1.07 16 45 H 0.13 -1.13 7.47 -2.39 -0.02 -1.15 16 46 H 0.17 -2.00 6.30 -2.91 -0.02 -2.02 16 47 H 0.16 -1.52 8.06 -2.91 -0.02 -1.55 16 48 H 0.14 -0.93 7.96 -2.39 -0.02 -0.95 16 49 H 0.39 -3.43 8.70 -74.06 -0.64 -4.07 16 50 H 0.13 0.29 4.87 -2.91 -0.01 0.27 16 51 H 0.09 -0.32 7.44 -2.39 -0.02 -0.33 16 52 H 0.07 0.36 6.95 -2.39 -0.02 0.35 16 Total: 0.00 -24.67 430.03 4.28 -20.39 By element: Atomic # 1 Polarization: -18.75 SS G_CDS: 1.03 Total: -17.71 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 6.23 Total: 17.51 kcal Atomic # 7 Polarization: 0.63 SS G_CDS: -2.44 Total: -1.81 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -2.31 Total: -12.14 kcal Atomic # 14 Polarization: -7.44 SS G_CDS: 2.45 Total: -4.99 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -0.68 Total: -1.24 kcal Total: -24.67 4.28 -20.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567694_6201210.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.431 kcal (2) G-P(sol) polarization free energy of solvation -24.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds