Wall clock time and date at job start Tue Mar 9 2021 13:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86294 * 109.47225 * 2 1 4 4 C 1.86304 * 109.46950 * 240.00295 * 2 1 3 5 5 C 1.86297 * 109.47148 * 120.00448 * 2 1 3 6 6 C 1.53045 * 109.49602 * 179.83688 * 5 2 1 7 7 C 1.53038 * 109.53516 * 178.67959 * 6 5 2 8 8 C 1.53194 * 109.31101 * 61.36880 * 7 6 5 9 9 N 1.46924 * 108.77334 * 305.36035 * 8 7 6 10 10 C 1.34787 * 120.63033 * 233.88527 * 9 8 7 11 11 O 1.21276 * 119.99928 * 179.72235 * 10 9 8 12 12 C 1.50703 * 119.99759 * 359.72119 * 10 9 8 13 13 N 1.46503 * 109.46635 * 179.97438 * 12 10 9 14 14 C 1.36835 * 125.06211 * 264.69197 * 13 12 10 15 15 C 1.34233 * 109.93595 * 179.81894 * 14 13 12 16 16 C 1.50703 * 126.49985 * 180.13779 * 15 14 13 17 17 O 1.42900 * 109.47135 * 105.35733 * 16 15 14 18 18 Si 1.86297 * 109.46892 * 345.35490 * 16 15 14 19 19 H 1.48507 * 109.47219 * 60.00440 * 18 16 15 20 20 H 1.48498 * 109.47022 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47211 * 300.00138 * 18 16 15 22 22 C 1.46495 * 106.99868 * 0.43536 * 15 14 13 23 23 C 1.39591 * 134.03304 * 179.76333 * 22 15 14 24 24 C 1.36663 * 119.76605 * 180.02562 * 23 22 15 25 25 C 1.38789 * 120.52148 * 359.95256 * 24 23 22 26 26 C 1.37785 * 120.67009 * 0.02562 * 25 24 23 27 27 C 1.37696 * 125.06098 * 84.99995 * 13 12 10 28 28 C 1.46926 * 118.73991 * 53.61035 * 9 8 7 29 29 H 1.09008 * 109.47020 * 299.99791 * 1 2 3 30 30 H 1.08998 * 109.47230 * 59.99337 * 1 2 3 31 31 H 1.08995 * 109.47511 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47504 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47558 * 300.00462 * 3 2 1 34 34 H 1.09003 * 109.47344 * 60.00443 * 3 2 1 35 35 H 1.09003 * 109.47084 * 300.00136 * 4 2 1 36 36 H 1.08998 * 109.47326 * 59.99892 * 4 2 1 37 37 H 1.08997 * 109.47175 * 180.02562 * 4 2 1 38 38 H 1.09001 * 109.52520 * 299.91641 * 5 2 1 39 39 H 1.08994 * 109.45779 * 298.70275 * 6 5 2 40 40 H 1.08999 * 109.45805 * 58.66653 * 6 5 2 41 41 H 1.09005 * 109.49668 * 181.31620 * 7 6 5 42 42 H 1.08996 * 109.50270 * 301.38288 * 7 6 5 43 43 H 1.09004 * 109.58535 * 185.57376 * 8 7 6 44 44 H 1.08994 * 109.59149 * 65.14853 * 8 7 6 45 45 H 1.08998 * 109.47136 * 299.99814 * 12 10 9 46 46 H 1.09001 * 109.47288 * 59.99840 * 12 10 9 47 47 H 1.07998 * 125.02723 * 359.97438 * 14 13 12 48 48 H 1.08999 * 109.46734 * 225.35797 * 16 15 14 49 49 H 0.96706 * 113.99845 * 300.00003 * 17 16 15 50 50 H 1.08004 * 120.11719 * 359.97438 * 23 22 15 51 51 H 1.07993 * 119.73945 * 179.97438 * 24 23 22 52 52 H 1.08004 * 119.66490 * 180.02562 * 25 24 23 53 53 H 1.08004 * 120.11177 * 180.02562 * 26 25 24 54 54 H 1.09001 * 109.58178 * 66.18066 * 28 9 8 55 55 H 1.08998 * 109.58625 * 186.46082 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5210 6 6 4.0144 -0.8822 1.5196 7 6 4.5257 -1.5746 2.7850 8 6 4.0385 -3.0269 2.7999 9 7 2.5764 -3.0367 2.6554 10 6 1.8024 -3.6838 3.5493 11 8 0.5963 -3.6802 3.4218 12 6 2.4357 -4.4116 4.7070 13 7 1.3898 -5.0274 5.5275 14 6 0.8389 -4.4685 6.6484 15 6 -0.0922 -5.2895 7.1590 16 6 -0.9300 -5.0414 8.3869 17 8 -2.2626 -4.7063 7.9945 18 14 -0.1980 -3.6343 9.3641 19 1 -0.1738 -2.4090 8.5254 20 1 -1.0232 -3.3901 10.5743 21 1 1.1868 -3.9825 9.7718 22 6 -0.1344 -6.4758 6.3005 23 6 -0.8785 -7.6567 6.3132 24 6 -0.6759 -8.5968 5.3422 25 6 0.2635 -8.3864 4.3424 26 6 1.0085 -7.2278 4.3106 27 6 0.8189 -6.2576 5.2889 28 6 1.9737 -2.3227 1.5216 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.5740 1.7564 0.0005 33 1 2.1207 2.2703 -0.8899 34 1 2.1208 2.2703 0.8900 35 1 2.1206 -1.9058 -1.5213 36 1 2.1206 -0.3643 -2.4112 37 1 3.5739 -0.8786 -1.5210 38 1 2.1224 -0.3644 2.4117 39 1 4.3753 -1.4178 0.6415 40 1 4.3801 0.1443 1.4944 41 1 5.6155 -1.5563 2.7947 42 1 4.1453 -1.0538 3.6637 43 1 4.3156 -3.4956 3.7442 44 1 4.4911 -3.5727 1.9720 45 1 3.1035 -5.1853 4.3282 46 1 3.0039 -3.7058 5.3129 47 1 1.1111 -3.5077 7.0598 48 1 -0.9477 -5.9407 9.0024 49 1 -2.3228 -3.9142 7.4430 50 1 -1.6112 -7.8273 7.0882 51 1 -1.2516 -9.5105 5.3526 52 1 0.4120 -9.1384 3.5816 53 1 1.7368 -7.0732 3.5282 54 1 2.2580 -2.8111 0.5895 55 1 0.8883 -2.3289 1.6212 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567694_9818708.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:19:50 Heat of formation + Delta-G solvation = -39.863710 kcal Electronic energy + Delta-G solvation = -32933.253237 eV Core-core repulsion = 28866.172035 eV Total energy + Delta-G solvation = -4067.081203 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 374.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.58327 -41.07704 -38.49798 -38.07414 -37.56768 -34.40891 -33.71533 -32.22757 -31.31926 -30.26167 -29.45283 -28.98249 -28.44823 -28.35565 -26.44372 -25.45781 -23.99134 -23.67001 -22.70583 -21.72207 -20.70481 -20.04512 -18.68316 -18.44746 -17.78681 -17.32514 -16.81819 -16.46631 -16.43023 -16.06716 -15.61559 -15.52670 -15.31342 -15.04178 -14.84506 -14.76853 -14.70398 -14.53559 -14.23758 -14.18325 -14.07590 -13.86404 -13.70921 -13.65735 -13.54561 -13.27240 -13.21196 -13.14118 -13.03064 -12.71533 -12.60993 -12.53789 -12.34848 -12.16928 -12.07331 -11.91123 -11.80586 -11.69640 -11.55587 -11.18456 -10.79539 -10.74000 -10.59185 -10.30182 -10.28857 -9.64583 -9.17739 -8.64558 0.12482 0.63148 1.20699 1.34132 1.40191 1.47456 1.55788 1.65687 1.77245 1.93490 1.93886 1.97100 2.17489 2.68022 2.93899 3.33202 3.58821 3.60138 3.70198 3.78027 3.92875 3.96533 4.00719 4.05463 4.07294 4.15876 4.21193 4.28307 4.44318 4.50223 4.57727 4.59243 4.68613 4.70835 4.72308 4.73758 4.77497 4.81740 4.83085 4.83767 4.85343 4.86542 4.89113 4.99104 5.02397 5.13232 5.20994 5.26250 5.43422 5.47584 5.50181 5.53324 5.63112 5.65807 5.67252 5.73115 5.74234 6.14829 6.21318 6.33282 6.73778 7.00535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.080 2.920 3 C -0.458 4.458 4 C -0.458 4.458 5 C -0.392 4.392 6 C -0.112 4.112 7 C -0.134 4.134 8 C 0.095 3.905 9 N -0.602 5.602 10 C 0.488 3.512 11 O -0.575 6.575 12 C 0.089 3.911 13 N -0.468 5.468 14 C 0.060 3.940 15 C -0.215 4.215 16 C -0.052 4.052 17 O -0.559 6.559 18 Si 0.992 3.008 19 H -0.250 1.250 20 H -0.271 1.271 21 H -0.249 1.249 22 C -0.114 4.114 23 C -0.084 4.084 24 C -0.153 4.153 25 C -0.105 4.105 26 C -0.137 4.137 27 C 0.090 3.910 28 C 0.118 3.882 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.141 0.859 46 H 0.155 0.845 47 H 0.189 0.811 48 H 0.111 0.889 49 H 0.383 0.617 50 H 0.124 0.876 51 H 0.139 0.861 52 H 0.146 0.854 53 H 0.129 0.871 54 H 0.081 0.919 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.510 3.036 -2.132 10.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.271 2.729 3 C -0.565 4.565 4 C -0.565 4.565 5 C -0.455 4.455 6 C -0.149 4.149 7 C -0.172 4.172 8 C -0.026 4.026 9 N -0.335 5.335 10 C 0.275 3.725 11 O -0.454 6.454 12 C -0.036 4.036 13 N -0.150 5.150 14 C -0.065 4.065 15 C -0.222 4.222 16 C -0.162 4.162 17 O -0.366 6.366 18 Si 0.813 3.187 19 H -0.173 1.173 20 H -0.196 1.196 21 H -0.172 1.172 22 C -0.119 4.119 23 C -0.103 4.103 24 C -0.172 4.172 25 C -0.124 4.124 26 C -0.157 4.157 27 C -0.015 4.015 28 C -0.003 4.003 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.079 0.921 43 H 0.122 0.878 44 H 0.106 0.894 45 H 0.159 0.841 46 H 0.172 0.828 47 H 0.206 0.794 48 H 0.129 0.871 49 H 0.232 0.768 50 H 0.142 0.858 51 H 0.157 0.843 52 H 0.164 0.836 53 H 0.147 0.853 54 H 0.099 0.901 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.348 3.331 -1.532 10.042 hybrid contribution -0.649 0.106 -0.695 0.956 sum 8.700 3.437 -2.226 9.615 Atomic orbital electron populations 1.26496 1.23735 1.03796 1.04034 0.78136 0.64038 0.65961 0.64815 1.26232 1.06851 1.19145 1.04284 1.26254 1.06930 1.07963 1.15371 1.26529 1.01666 1.00898 1.16445 1.21281 0.92958 1.02006 0.98655 1.21928 1.01907 0.94656 0.98683 1.22140 0.77419 0.98672 1.04395 1.48317 1.08234 1.50966 1.25978 1.21407 0.87178 0.79621 0.84323 1.90769 1.16314 1.62468 1.75832 1.21992 0.89171 1.00522 0.91891 1.43441 1.34218 1.14492 1.22865 1.21955 0.96575 0.99243 0.88762 1.20841 1.03586 0.95881 1.01919 1.24528 0.85044 1.09866 0.96761 1.86460 1.26014 1.50842 1.73265 0.85167 0.79186 0.76142 0.78184 1.17305 1.19596 1.17191 1.19319 0.99151 0.96239 0.97156 1.20490 0.98323 0.92280 0.99186 1.20936 1.00297 1.00298 0.95704 1.21136 0.95539 0.96810 0.98942 1.20225 1.03431 0.93667 0.98382 1.18430 0.97055 0.87737 0.98251 1.21431 0.98375 0.91985 0.88555 0.92047 0.91278 0.92183 0.90336 0.91361 0.91585 0.91449 0.91382 0.90200 0.90588 0.90340 0.90352 0.88793 0.92120 0.87768 0.89414 0.84115 0.82790 0.79397 0.87102 0.76823 0.85779 0.84332 0.83642 0.85293 0.90094 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 0.24 8.65 113.37 0.98 1.22 16 2 Si 1.08 -6.86 10.67 68.60 0.73 -6.12 16 3 C -0.46 2.29 8.65 113.37 0.98 3.28 16 4 C -0.46 2.53 8.61 113.37 0.98 3.50 16 5 C -0.39 2.04 1.88 30.67 0.06 2.09 16 6 C -0.11 0.96 4.54 30.62 0.14 1.10 16 7 C -0.13 1.32 6.08 30.67 0.19 1.51 16 8 C 0.10 -0.93 6.34 86.36 0.55 -0.38 16 9 N -0.60 1.35 2.97 -818.91 -2.43 -1.08 16 10 C 0.49 1.50 7.77 87.66 0.68 2.18 16 11 O -0.57 -8.12 15.83 -3.02 -0.05 -8.17 16 12 C 0.09 -0.29 4.83 85.63 0.41 0.12 16 13 N -0.47 -2.16 2.27 -519.99 -1.18 -3.34 16 14 C 0.06 0.25 9.89 83.00 0.82 1.07 16 15 C -0.21 -1.56 5.58 -18.62 -0.10 -1.67 16 16 C -0.05 -0.22 3.06 71.24 0.22 -0.01 16 17 O -0.56 -3.93 12.88 -148.98 -1.92 -5.85 16 18 Si 0.99 0.25 26.07 68.60 1.79 2.04 16 19 H -0.25 0.19 7.04 99.48 0.70 0.89 16 20 H -0.27 -0.95 7.11 99.48 0.71 -0.25 16 21 H -0.25 0.04 7.11 99.48 0.71 0.75 16 22 C -0.11 -1.27 6.35 -20.20 -0.13 -1.40 16 23 C -0.08 -0.83 10.05 22.23 0.22 -0.61 16 24 C -0.15 -1.08 9.97 22.03 0.22 -0.86 16 25 C -0.11 -0.61 10.01 22.29 0.22 -0.39 16 26 C -0.14 -0.94 10.00 22.36 0.22 -0.71 16 27 C 0.09 0.83 6.80 39.03 0.27 1.10 16 28 C 0.12 -0.14 5.09 86.36 0.44 0.30 16 29 H 0.06 0.05 7.96 -2.38 -0.02 0.03 16 30 H 0.07 -0.04 7.96 -2.39 -0.02 -0.06 16 31 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 32 H 0.08 -0.51 7.74 -2.39 -0.02 -0.52 16 33 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 34 H 0.06 -0.27 7.96 -2.39 -0.02 -0.29 16 35 H 0.07 -0.32 7.60 -2.39 -0.02 -0.34 16 36 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 37 H 0.08 -0.57 7.84 -2.39 -0.02 -0.59 16 38 H 0.08 -0.21 7.97 -2.39 -0.02 -0.23 16 39 H 0.08 -0.80 7.88 -2.39 -0.02 -0.82 16 40 H 0.08 -0.76 7.71 -2.39 -0.02 -0.78 16 41 H 0.09 -1.19 8.14 -2.38 -0.02 -1.21 16 42 H 0.06 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.10 -1.50 5.93 -2.38 -0.01 -1.51 16 44 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 45 H 0.14 -1.18 7.95 -2.39 -0.02 -1.20 16 46 H 0.15 -1.64 7.66 -2.39 -0.02 -1.66 16 47 H 0.19 -0.42 6.29 -2.91 -0.02 -0.44 16 48 H 0.11 0.40 7.96 -2.39 -0.02 0.38 16 49 H 0.38 0.62 8.70 -74.05 -0.64 -0.02 16 50 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 51 H 0.14 0.36 8.06 -2.91 -0.02 0.33 16 52 H 0.15 0.07 8.06 -2.91 -0.02 0.05 16 53 H 0.13 0.32 8.06 -2.91 -0.02 0.30 16 54 H 0.08 -0.29 7.44 -2.39 -0.02 -0.31 16 55 H 0.07 0.32 6.95 -2.39 -0.02 0.30 16 Total: 0.00 -24.67 436.15 5.27 -19.39 By element: Atomic # 1 Polarization: -9.28 SS G_CDS: 0.97 Total: -8.31 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 7.36 Total: 11.46 kcal Atomic # 7 Polarization: -0.81 SS G_CDS: -3.61 Total: -4.43 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -1.97 Total: -14.03 kcal Atomic # 14 Polarization: -6.61 SS G_CDS: 2.52 Total: -4.09 kcal Total: -24.67 5.27 -19.39 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567694_9818708.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.470 kcal (2) G-P(sol) polarization free energy of solvation -24.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds