Wall clock time and date at job start Tue Mar 9 2021 14:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35884 * 116.99760 * 2 1 4 4 C 1.38822 * 119.93436 * 179.97438 * 3 2 1 5 5 C 1.37928 * 120.06349 * 179.97438 * 4 3 2 6 6 C 1.39349 * 119.93453 * 0.02562 * 5 4 3 7 7 C 1.48407 * 120.06324 * 179.97438 * 6 5 4 8 8 N 1.31626 * 126.03922 * 317.77925 * 7 6 5 9 9 N 1.40071 * 108.11056 * 180.12177 * 8 7 6 10 10 C 1.46498 * 125.93086 * 179.85421 * 9 8 7 11 11 C 1.50698 * 109.47134 * 304.69106 * 10 9 8 12 12 O 1.21274 * 120.00056 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99830 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99825 * 180.02562 * 13 11 10 15 15 H 1.08995 * 112.91045 * 336.25085 * 14 13 11 16 16 C 1.53779 * 113.61240 * 107.50461 * 14 13 11 17 17 C 1.53780 * 87.08418 * 89.11503 * 16 14 13 18 18 H 1.09002 * 113.61131 * 270.88207 * 17 16 14 19 19 C 1.52998 * 113.61463 * 139.98188 * 17 16 14 20 20 N 1.46497 * 109.47345 * 87.50152 * 19 17 16 21 21 C 1.35309 * 125.86814 * 124.71706 * 20 19 17 22 22 C 1.35350 * 106.17557 * 179.90564 * 21 20 19 23 23 N 1.33768 * 106.49927 * 0.34869 * 22 21 20 24 24 N 1.28634 * 108.88305 * 359.77314 * 23 22 21 25 25 C 1.53772 * 87.08004 * 25.43193 * 17 16 14 26 26 C 1.35040 * 108.13882 * 359.59302 * 9 8 7 27 27 C 1.35088 * 107.98017 * 0.23861 * 26 9 8 28 28 C 1.50704 * 126.07430 * 179.97438 * 27 26 9 29 29 O 1.42896 * 109.46850 * 105.17601 * 28 27 26 30 30 Si 1.86302 * 109.47236 * 345.17522 * 28 27 26 31 31 C 1.39350 * 119.87670 * 0.24853 * 6 5 4 32 32 C 1.37933 * 119.93418 * 359.47320 * 31 6 5 33 33 H 1.09000 * 109.46939 * 300.00375 * 1 2 3 34 34 H 1.08998 * 109.46729 * 60.00073 * 1 2 3 35 35 H 1.08996 * 109.46969 * 180.02562 * 1 2 3 36 36 H 1.07999 * 119.96878 * 359.97438 * 4 3 2 37 37 H 1.08000 * 120.03247 * 180.02562 * 5 4 3 38 38 H 1.09007 * 109.47241 * 184.68827 * 10 9 8 39 39 H 1.09003 * 109.47008 * 64.69508 * 10 9 8 40 40 H 0.97007 * 120.00246 * 359.97438 * 13 11 10 41 41 H 1.09001 * 113.61153 * 203.66425 * 16 14 13 42 42 H 1.09004 * 113.61599 * 334.56094 * 16 14 13 43 43 H 1.09001 * 109.47303 * 207.50318 * 19 17 16 44 44 H 1.09000 * 109.47124 * 327.49891 * 19 17 16 45 45 H 1.08001 * 126.91156 * 0.02562 * 21 20 19 46 46 H 1.07999 * 126.75285 * 180.12686 * 22 21 20 47 47 H 1.09008 * 113.61552 * 220.01760 * 25 17 16 48 48 H 1.09001 * 113.62031 * 89.11838 * 25 17 16 49 49 H 1.08002 * 126.00904 * 180.20769 * 26 9 8 50 50 H 1.08997 * 109.46765 * 225.17360 * 28 27 26 51 51 H 0.96700 * 114.00182 * 179.97438 * 29 28 27 52 52 H 1.48499 * 109.99945 * 60.00044 * 30 28 27 53 53 H 1.48498 * 109.99798 * 181.32100 * 30 28 27 54 54 H 1.07998 * 120.03875 * 179.74991 * 31 6 5 55 55 H 1.07992 * 119.97140 * 180.25236 * 32 31 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4323 1.2819 0.0005 5 6 4.0612 2.5094 0.0000 6 6 3.3035 3.6789 -0.0005 7 6 3.9772 5.0013 -0.0005 8 7 5.0308 5.3336 0.7150 9 7 5.3497 6.6668 0.4273 10 6 6.4543 7.4318 1.0111 11 6 6.3455 7.4040 2.5139 12 8 5.4347 6.8047 3.0449 13 7 7.2597 8.0461 3.2677 14 6 7.1543 8.0186 4.7286 15 1 6.1390 7.8298 5.0773 16 6 8.2130 7.1326 5.4061 17 6 9.1172 8.3760 5.4415 18 1 9.7323 8.4941 4.5494 19 6 9.9163 8.5159 6.7387 20 7 11.1757 7.7772 6.6185 21 6 12.4149 8.2871 6.8062 22 6 13.2784 7.2656 6.5986 23 7 12.5354 6.1968 6.2904 24 7 11.2939 6.5329 6.3108 25 6 7.8295 9.2162 5.4176 26 6 4.4657 7.1228 -0.4861 27 6 3.6061 6.1204 -0.7711 28 6 2.4544 6.1878 -1.7407 29 8 2.7923 5.4746 -2.9320 30 14 2.1004 7.9678 -2.1618 31 6 1.9120 3.6045 0.0047 32 6 1.2885 2.3741 -0.0006 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0276 0.0005 36 1 4.0190 0.3752 0.0014 37 1 5.1398 2.5642 0.0000 38 1 6.4061 8.4635 0.6623 39 1 7.4031 6.9896 0.7072 40 1 7.9881 8.5259 2.8429 41 1 7.9186 6.7785 6.3940 42 1 8.5908 6.3361 4.7650 43 1 10.1290 9.5690 6.9227 44 1 9.3360 8.1121 7.5683 45 1 12.6647 9.3040 7.0707 46 1 14.3556 7.3064 6.6648 47 1 7.8977 10.1019 4.7859 48 1 7.4303 9.4318 6.4087 49 1 4.4486 8.1146 -0.9132 50 1 1.5708 5.7391 -1.2869 51 1 2.0953 5.4758 -3.6022 52 1 3.2976 8.5909 -2.7812 53 1 0.9462 8.0496 -3.0924 54 1 1.3222 4.5092 0.0084 55 1 0.2102 2.3158 -0.0006 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567714_12622750.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:58:58 Heat of formation + Delta-G solvation = 145.405450 kcal Electronic energy + Delta-G solvation = -39848.291000 eV Core-core repulsion = 34665.084757 eV Total energy + Delta-G solvation = -5183.206243 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 425.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.15227 -42.49759 -41.31796 -40.98384 -39.56374 -38.45140 -37.73883 -35.78050 -34.73281 -34.07018 -32.39576 -32.04599 -31.92468 -31.19956 -29.74419 -28.77193 -27.93660 -26.73338 -25.98265 -24.84400 -23.83465 -23.66627 -23.49616 -22.33964 -22.12232 -21.54345 -20.88990 -20.39930 -19.20003 -18.75171 -18.45867 -18.30005 -18.20778 -17.32563 -17.16543 -16.98389 -16.83659 -16.68266 -16.26408 -15.99296 -15.84160 -15.74030 -15.54981 -15.31949 -15.23319 -15.17454 -15.01164 -14.81139 -14.59049 -14.47469 -14.23970 -13.98428 -13.77265 -13.69000 -13.52688 -13.39406 -13.03984 -13.00207 -12.79949 -12.66289 -12.64140 -12.33898 -12.28108 -12.11431 -11.90720 -11.83104 -11.72631 -11.54072 -11.28601 -11.22582 -10.98267 -10.50650 -10.31167 -10.24299 -10.14189 -10.05529 -9.67641 -8.97788 -4.85251 0.07769 0.30154 0.71082 0.79862 1.25088 1.39389 1.44398 1.53801 1.63528 1.64240 1.66333 1.99718 2.06011 2.31474 2.74570 3.28026 3.31338 3.44727 3.54761 3.60872 3.61669 3.65235 3.74089 3.76233 3.81554 3.86218 3.90836 4.06641 4.08790 4.12479 4.16903 4.21909 4.27381 4.33422 4.36419 4.36949 4.38173 4.39939 4.49430 4.55950 4.65464 4.69871 4.74126 4.74564 4.82959 4.85882 4.88417 4.97102 4.99542 5.03793 5.04506 5.12331 5.23046 5.28653 5.48532 5.51007 5.53767 5.65896 5.74438 5.89474 6.37194 6.42286 6.59191 6.71762 7.13797 7.56665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.336 6.336 3 C 0.123 3.877 4 C -0.164 4.164 5 C -0.066 4.066 6 C -0.061 4.061 7 C 0.117 3.883 8 N -0.296 5.296 9 N -0.361 5.361 10 C 0.110 3.890 11 C 0.500 3.500 12 O -0.560 6.560 13 N -0.697 5.697 14 C 0.113 3.887 15 H 0.083 0.917 16 C -0.147 4.147 17 C -0.112 4.112 18 H 0.096 0.904 19 C 0.113 3.887 20 N -0.285 5.285 21 C -0.034 4.034 22 C -0.074 4.074 23 N -0.327 5.327 24 N -0.123 5.123 25 C -0.107 4.107 26 C 0.074 3.926 27 C -0.226 4.226 28 C -0.054 4.054 29 O -0.558 6.558 30 Si 0.770 3.230 31 C -0.056 4.056 32 C -0.204 4.204 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.116 0.884 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.181 0.819 39 H 0.134 0.866 40 H 0.419 0.581 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.152 0.848 44 H 0.107 0.893 45 H 0.237 0.763 46 H 0.208 0.792 47 H 0.103 0.897 48 H 0.119 0.881 49 H 0.216 0.784 50 H 0.079 0.921 51 H 0.389 0.611 52 H -0.276 1.276 53 H -0.286 1.286 54 H 0.147 0.853 55 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.349 14.866 1.363 14.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.249 6.249 3 C 0.077 3.923 4 C -0.183 4.183 5 C -0.086 4.086 6 C -0.063 4.063 7 C -0.048 4.048 8 N -0.118 5.118 9 N -0.142 5.142 10 C -0.014 4.014 11 C 0.285 3.715 12 O -0.436 6.436 13 N -0.350 5.350 14 C 0.007 3.993 15 H 0.101 0.899 16 C -0.186 4.186 17 C -0.131 4.131 18 H 0.114 0.886 19 C -0.006 4.006 20 N -0.079 5.079 21 C -0.185 4.185 22 C -0.232 4.232 23 N -0.192 5.192 24 N -0.102 5.102 25 C -0.145 4.145 26 C -0.071 4.071 27 C -0.237 4.237 28 C -0.162 4.162 29 O -0.367 6.367 30 Si 0.672 3.328 31 C -0.075 4.075 32 C -0.222 4.222 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.135 0.865 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.198 0.802 39 H 0.151 0.849 40 H 0.257 0.743 41 H 0.108 0.892 42 H 0.063 0.937 43 H 0.170 0.830 44 H 0.125 0.875 45 H 0.253 0.747 46 H 0.225 0.775 47 H 0.122 0.878 48 H 0.138 0.862 49 H 0.232 0.768 50 H 0.097 0.903 51 H 0.238 0.762 52 H -0.203 1.203 53 H -0.213 1.213 54 H 0.165 0.835 55 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.205 13.160 2.019 13.368 hybrid contribution 0.243 -0.108 -1.291 1.318 sum -0.963 13.052 0.728 13.108 Atomic orbital electron populations 1.23380 0.76236 1.05654 1.02511 1.86060 1.23676 1.26795 1.88412 1.19261 0.92366 0.84953 0.95681 1.20479 0.92146 0.98503 1.07163 1.21005 0.99811 0.91053 0.96698 1.17854 0.93321 0.89209 1.05915 1.20748 0.94217 0.94332 0.95540 1.77715 1.17315 0.94074 1.22670 1.48062 1.24776 1.08634 1.32747 1.21966 0.89605 1.00017 0.89829 1.21002 0.81926 0.78394 0.90190 1.90820 1.35195 1.42998 1.74631 1.45438 1.29580 1.53942 1.06079 1.21844 0.99393 0.98385 0.79660 0.89903 1.23481 0.96774 0.96974 1.01402 1.22818 0.95697 0.97351 0.97243 0.88571 1.22651 0.79801 0.98345 0.99818 1.47885 1.09513 1.07752 1.42743 1.24431 0.83105 1.03865 1.07148 1.24226 1.03100 0.89358 1.06537 1.75105 0.97387 1.28041 1.18631 1.78298 1.14542 0.97148 1.20220 1.23250 0.91994 0.96202 1.03054 1.22762 0.90088 1.01144 0.93082 1.19602 1.04279 0.93803 1.05998 1.24489 0.96295 1.09779 0.85651 1.86609 1.46472 1.75487 1.28166 0.94282 0.77425 0.74603 0.86452 1.21126 0.92537 0.98265 0.95611 1.21408 1.01387 0.91178 1.08241 0.91502 0.91316 0.86530 0.84465 0.85928 0.80159 0.84866 0.74343 0.89181 0.93705 0.83050 0.87485 0.74680 0.77503 0.87810 0.86241 0.76812 0.90342 0.76186 1.20273 1.21271 0.83499 0.82405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.34 -2.69 10.49 -92.25 -0.97 -3.66 16 3 C 0.12 1.16 6.69 22.55 0.15 1.31 16 4 C -0.16 -1.84 9.97 22.34 0.22 -1.62 16 5 C -0.07 -0.86 9.77 22.46 0.22 -0.64 16 6 C -0.06 -0.76 5.74 -20.03 -0.12 -0.87 16 7 C 0.12 1.51 6.66 42.53 0.28 1.79 16 8 N -0.30 -4.29 11.69 -48.16 -0.56 -4.85 16 9 N -0.36 -1.93 3.39 -351.90 -1.19 -3.13 16 10 C 0.11 -0.48 6.98 85.63 0.60 0.12 16 11 C 0.50 0.92 7.86 87.66 0.69 1.61 16 12 O -0.56 -7.88 15.32 -3.01 -0.05 -7.93 16 13 N -0.70 3.71 5.26 -440.05 -2.32 1.39 16 14 C 0.11 -0.43 4.32 45.52 0.20 -0.24 16 15 H 0.08 0.15 7.47 -2.39 -0.02 0.13 16 16 C -0.15 0.20 7.43 31.12 0.23 0.43 16 17 C -0.11 1.00 3.64 -10.27 -0.04 0.96 16 18 H 0.10 -0.77 8.14 -2.39 -0.02 -0.79 16 19 C 0.11 -1.14 6.29 86.38 0.54 -0.59 16 20 N -0.28 0.33 3.44 -347.74 -1.20 -0.86 16 21 C -0.03 0.15 11.57 83.49 0.97 1.12 16 22 C -0.07 -0.16 12.05 83.73 1.01 0.85 16 23 N -0.33 -3.77 12.41 -58.26 -0.72 -4.49 16 24 N -0.12 -1.11 12.93 37.02 0.48 -0.63 16 25 C -0.11 1.34 7.39 31.12 0.23 1.57 16 26 C 0.07 0.16 9.96 83.47 0.83 0.99 16 27 C -0.23 -1.55 5.39 -19.95 -0.11 -1.66 16 28 C -0.05 -0.12 2.50 71.24 0.18 0.06 16 29 O -0.56 -2.99 12.86 -148.98 -1.92 -4.90 16 30 Si 0.77 -2.44 30.77 68.60 2.11 -0.32 16 31 C -0.06 -0.43 8.88 22.47 0.20 -0.23 16 32 C -0.20 -1.19 9.02 22.34 0.20 -0.99 16 33 H 0.07 -0.19 7.66 -2.39 -0.02 -0.21 16 34 H 0.07 -0.23 7.65 -2.39 -0.02 -0.24 16 35 H 0.12 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.12 1.60 8.06 -2.91 -0.02 1.57 16 38 H 0.18 -2.80 8.07 -2.38 -0.02 -2.82 16 39 H 0.13 -1.00 8.14 -2.39 -0.02 -1.02 16 40 H 0.42 -5.32 8.70 -92.70 -0.81 -6.12 16 41 H 0.09 -0.06 7.90 -2.39 -0.02 -0.08 16 42 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.15 -2.77 8.07 -2.39 -0.02 -2.78 16 44 H 0.11 -1.10 7.84 -2.39 -0.02 -1.12 16 45 H 0.24 -3.55 8.06 -2.91 -0.02 -3.58 16 46 H 0.21 -0.80 8.06 -2.91 -0.02 -0.83 16 47 H 0.10 -1.65 8.14 -2.38 -0.02 -1.67 16 48 H 0.12 -1.80 8.10 -2.39 -0.02 -1.82 16 49 H 0.22 -1.47 6.36 -2.91 -0.02 -1.49 16 50 H 0.08 -0.02 5.55 -2.39 -0.01 -0.04 16 51 H 0.39 -1.13 8.74 -74.06 -0.65 -1.77 16 52 H -0.28 -0.15 7.04 99.48 0.70 0.55 16 53 H -0.29 -0.34 7.11 99.48 0.71 0.37 16 54 H 0.15 0.41 6.20 -2.91 -0.02 0.39 16 55 H 0.16 -0.07 6.28 -2.91 -0.02 -0.09 16 Total: 0.00 -47.64 462.17 0.82 -46.82 By element: Atomic # 1 Polarization: -22.07 SS G_CDS: -0.46 Total: -22.53 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 7.60 Total: 5.09 kcal Atomic # 7 Polarization: -7.06 SS G_CDS: -5.51 Total: -12.57 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -2.93 Total: -16.49 kcal Atomic # 14 Polarization: -2.44 SS G_CDS: 2.11 Total: -0.32 kcal Total: -47.64 0.82 -46.82 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567714_12622750.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.230 kcal (2) G-P(sol) polarization free energy of solvation -47.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds