Wall clock time and date at job start Tue Mar 9 2021 15:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35998 * 116.99922 * 2 1 4 4 C 1.39151 * 120.07756 * 179.97438 * 3 2 1 5 5 O 1.35997 * 120.07031 * 359.97438 * 4 3 2 6 6 C 1.42897 * 117.00292 * 179.72761 * 5 4 3 7 7 C 1.50703 * 109.47196 * 179.97438 * 6 5 4 8 8 O 1.21274 * 120.00019 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99605 * 179.97438 * 7 6 5 10 10 C 1.46508 * 119.99573 * 179.97438 * 9 7 6 11 11 H 1.08996 * 112.85068 * 336.20548 * 10 9 7 12 12 C 1.53782 * 113.68519 * 107.46782 * 10 9 7 13 13 C 1.53782 * 87.07859 * 89.12884 * 12 10 9 14 14 H 1.09000 * 113.68767 * 270.86497 * 13 12 10 15 15 C 1.53005 * 113.61559 * 139.97940 * 13 12 10 16 16 N 1.46500 * 109.47040 * 87.49830 * 15 13 12 17 17 C 1.35312 * 125.86582 * 124.99824 * 16 15 13 18 18 C 1.35359 * 106.17441 * 179.77310 * 17 16 15 19 19 N 1.33772 * 106.49554 * 0.22938 * 18 17 16 20 20 N 1.28640 * 108.88426 * 359.97438 * 19 18 17 21 21 C 1.53773 * 113.61203 * 205.00208 * 10 9 7 22 22 C 1.38564 * 119.85788 * 179.72974 * 4 3 2 23 23 C 1.38243 * 119.99778 * 0.27210 * 22 4 3 24 24 N 1.48004 * 119.92171 * 180.02562 * 23 22 4 25 25 O 1.21798 * 120.00472 * 0.02562 * 24 23 22 26 26 O 1.21805 * 119.99481 * 180.02562 * 24 23 22 27 27 C 1.38249 * 120.14656 * 0.02737 * 23 22 4 28 28 C 1.50701 * 119.92518 * 180.02562 * 27 23 22 29 29 O 1.42896 * 109.47458 * 74.99605 * 28 27 23 30 30 Si 1.86300 * 109.46861 * 194.99448 * 28 27 23 31 31 C 1.38243 * 120.14920 * 359.97046 * 27 23 22 32 32 H 1.08991 * 109.47264 * 300.00028 * 1 2 3 33 33 H 1.09005 * 109.46921 * 59.99878 * 1 2 3 34 34 H 1.08998 * 109.46983 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.47010 * 59.99982 * 6 5 4 36 36 H 1.08997 * 109.47126 * 300.00085 * 6 5 4 37 37 H 0.96999 * 120.00578 * 0.02562 * 9 7 6 38 38 H 1.08998 * 113.61566 * 334.57865 * 12 10 9 39 39 H 1.08999 * 113.61259 * 203.67075 * 12 10 9 40 40 H 1.08994 * 109.47014 * 327.50167 * 15 13 12 41 41 H 1.08995 * 109.47162 * 207.50285 * 15 13 12 42 42 H 1.08002 * 126.91567 * 0.04325 * 17 16 15 43 43 H 1.07994 * 126.74727 * 180.21281 * 18 17 16 44 44 H 1.08999 * 113.61451 * 156.25541 * 21 10 9 45 45 H 1.08994 * 113.61897 * 25.35201 * 21 10 9 46 46 H 1.08001 * 119.99773 * 180.29833 * 22 4 3 47 47 H 1.09000 * 109.47067 * 314.99413 * 28 27 23 48 48 H 0.96706 * 114.00008 * 59.99958 * 29 28 27 49 49 H 1.48510 * 109.99957 * 58.68307 * 30 28 27 50 50 H 1.48505 * 109.99700 * 179.97438 * 30 28 27 51 51 H 1.07997 * 120.00313 * 180.02562 * 31 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4359 1.2865 0.0005 5 8 4.1795 0.1478 0.0016 6 6 5.6003 0.3008 -0.0040 7 6 6.2519 -1.0581 -0.0012 8 8 5.5670 -2.0589 0.0044 9 7 7.5957 -1.1610 -0.0061 10 6 8.2292 -2.4820 -0.0029 11 1 7.5851 -3.2593 0.4083 12 6 8.8721 -2.8621 -1.3471 13 6 10.1553 -2.1870 -0.8346 14 1 10.2125 -1.1232 -1.0653 15 6 11.4339 -2.9437 -1.1999 16 7 11.8995 -2.5077 -2.5188 17 6 13.1301 -2.0233 -2.8049 18 6 13.1297 -1.7521 -4.1310 19 7 11.9132 -2.0747 -4.5843 20 7 11.2074 -2.5169 -3.6039 21 6 9.6492 -2.4827 0.5871 22 6 4.0602 2.5235 -0.0051 23 6 3.3028 3.6800 -0.0056 24 7 3.9714 5.0004 -0.0123 25 8 5.1875 5.0673 -0.0177 26 8 3.3053 6.0202 -0.0122 27 6 1.9223 3.6058 0.0001 28 6 1.1015 4.8697 -0.0010 29 8 1.1294 5.4546 -1.3045 30 14 -0.6578 4.4679 0.4618 31 6 1.2931 2.3749 0.0057 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 5.9097 0.8535 0.8831 36 1 5.9033 0.8477 -0.8968 37 1 8.1435 -0.3605 -0.0110 38 1 8.4250 -2.3571 -2.2033 39 1 8.9734 -3.9374 -1.4941 40 1 11.2288 -4.0139 -1.2227 41 1 12.2035 -2.7370 -0.4563 42 1 13.9495 -1.8854 -2.1149 43 1 13.9501 -1.3534 -4.7092 44 1 9.9630 -3.4543 0.9688 45 1 9.8296 -1.6715 1.2923 46 1 5.1385 2.5841 -0.0096 47 1 1.5159 5.5726 0.7216 48 1 0.7747 4.8835 -1.9996 49 1 -0.6973 3.8299 1.8023 50 1 -1.4775 5.7062 0.4649 51 1 0.2146 2.3197 0.0098 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567714_4549636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:00:46 Heat of formation + Delta-G solvation = 35.985614 kcal Electronic energy + Delta-G solvation = -40100.566325 eV Core-core repulsion = 34589.522136 eV Total energy + Delta-G solvation = -5511.044189 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 420.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.14505 -43.42829 -42.15562 -41.43254 -40.19676 -39.35176 -39.09311 -37.76016 -37.14967 -35.80262 -34.29622 -32.70155 -32.55529 -31.91944 -30.35122 -29.17177 -28.68040 -27.93152 -26.74396 -25.88863 -24.84772 -23.90131 -23.50584 -23.23722 -22.33589 -22.12314 -20.83075 -20.41688 -19.88486 -19.53347 -18.88845 -18.71085 -18.54843 -18.29623 -17.80793 -17.74040 -17.38179 -17.26156 -16.95986 -16.82658 -16.42446 -16.10695 -15.98336 -15.87032 -15.70443 -15.39925 -15.24123 -15.10642 -14.96671 -14.72781 -14.40241 -14.04583 -13.91906 -13.83268 -13.52310 -13.45286 -13.09233 -13.04226 -12.69165 -12.64978 -12.52851 -12.46236 -12.36090 -12.33390 -12.29775 -12.22170 -11.91303 -11.80329 -11.73451 -11.29703 -11.15784 -10.97706 -10.54988 -10.48237 -10.30433 -10.22513 -9.51932 -5.14291 -1.39033 -0.46112 0.13712 0.28010 0.71444 1.11729 1.18812 1.31713 1.53818 1.56376 1.64671 1.87196 1.87596 1.92842 2.28728 2.95765 3.14640 3.24062 3.29911 3.41792 3.43189 3.47700 3.54245 3.59607 3.64818 3.75104 3.82738 3.90628 3.91507 4.02959 4.06109 4.09162 4.17375 4.20777 4.33610 4.37006 4.37908 4.39649 4.40279 4.52967 4.63386 4.70897 4.74515 4.80704 4.81194 4.85204 4.95318 5.03865 5.09330 5.22587 5.29033 5.45759 5.56965 5.74662 6.03618 6.31518 6.44211 6.69875 7.01168 7.56999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.307 6.307 3 C 0.172 3.828 4 C 0.099 3.901 5 O -0.290 6.290 6 C 0.027 3.973 7 C 0.519 3.481 8 O -0.563 6.563 9 N -0.694 5.694 10 C 0.110 3.890 11 H 0.089 0.911 12 C -0.144 4.144 13 C -0.114 4.114 14 H 0.095 0.905 15 C 0.113 3.887 16 N -0.285 5.285 17 C -0.035 4.035 18 C -0.074 4.074 19 N -0.325 5.325 20 N -0.120 5.120 21 C -0.110 4.110 22 C -0.111 4.111 23 C -0.046 4.046 24 N 0.035 4.965 25 O -0.188 6.188 26 O -0.164 6.164 27 C -0.039 4.039 28 C -0.092 4.092 29 O -0.536 6.536 30 Si 0.787 3.213 31 C -0.162 4.162 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.419 0.581 38 H 0.050 0.950 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.149 0.851 42 H 0.235 0.765 43 H 0.208 0.792 44 H 0.122 0.878 45 H 0.099 0.901 46 H 0.182 0.818 47 H 0.115 0.885 48 H 0.393 0.607 49 H -0.271 1.271 50 H -0.290 1.290 51 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.967 -4.271 5.386 7.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.219 6.219 3 C 0.123 3.877 4 C 0.052 3.948 5 O -0.202 6.202 6 C -0.051 4.051 7 C 0.305 3.695 8 O -0.441 6.441 9 N -0.348 5.348 10 C 0.005 3.995 11 H 0.107 0.893 12 C -0.183 4.183 13 C -0.134 4.134 14 H 0.113 0.887 15 C -0.006 4.006 16 N -0.079 5.079 17 C -0.187 4.187 18 C -0.232 4.232 19 N -0.191 5.191 20 N -0.100 5.100 21 C -0.148 4.148 22 C -0.130 4.130 23 C -0.131 4.131 24 N 0.548 4.452 25 O -0.398 6.398 26 O -0.378 6.378 27 C -0.042 4.042 28 C -0.200 4.200 29 O -0.343 6.343 30 Si 0.689 3.311 31 C -0.181 4.181 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.257 0.743 38 H 0.068 0.932 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.167 0.833 42 H 0.252 0.748 43 H 0.224 0.776 44 H 0.141 0.859 45 H 0.118 0.882 46 H 0.199 0.801 47 H 0.132 0.868 48 H 0.242 0.758 49 H -0.197 1.197 50 H -0.217 1.217 51 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -0.563 -5.762 5.659 8.096 hybrid contribution 2.165 1.553 0.333 2.685 sum 1.602 -4.208 5.992 7.495 Atomic orbital electron populations 1.23821 0.74629 1.07113 1.04224 1.86336 1.24917 1.24472 1.86157 1.18674 0.89102 0.86436 0.93493 1.17975 0.88877 0.85069 1.02877 1.86300 1.18348 1.26849 1.88748 1.22892 0.78951 0.96081 1.07147 1.20292 0.83071 0.90396 0.75780 1.90780 1.63864 1.39741 1.49697 1.45368 1.05080 1.09910 1.74437 1.21929 0.94974 0.84930 0.97672 0.89307 1.23484 0.96234 1.01701 0.96892 1.22835 0.92380 1.00165 0.97983 0.88688 1.22642 0.99124 1.01146 0.77669 1.47873 1.09617 1.40143 1.10274 1.24420 0.91202 1.04005 0.99044 1.24215 0.97281 1.06996 0.94694 1.75103 1.05428 1.15272 1.23263 1.78274 1.21483 1.20878 0.89335 1.23274 0.91213 1.05639 0.94673 1.20890 1.02944 0.88220 1.00965 1.20553 0.92790 0.81885 1.17828 1.43720 1.00825 1.03452 0.97168 1.94502 0.96533 1.94126 1.54679 1.94576 1.64389 1.25410 1.53415 1.20239 0.91025 0.97721 0.95171 1.25787 1.10666 0.92784 0.90774 1.86669 1.87027 1.44623 1.16009 0.94378 0.71745 0.82247 0.82727 1.21094 1.01804 0.88046 1.07147 0.90071 0.88858 0.86050 0.85256 0.85857 0.74319 0.93152 0.88598 0.87217 0.83292 0.74838 0.77555 0.85949 0.88226 0.80121 0.86770 0.75799 1.19661 1.21727 0.78866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 9.81 113.37 1.11 1.16 16 2 O -0.31 0.01 10.28 -79.66 -0.82 -0.81 16 3 C 0.17 -0.12 6.70 22.57 0.15 0.03 16 4 C 0.10 0.11 6.70 22.57 0.15 0.27 16 5 O -0.29 -1.13 9.45 -67.10 -0.63 -1.76 16 6 C 0.03 -0.10 5.22 71.24 0.37 0.28 16 7 C 0.52 0.92 7.91 87.66 0.69 1.61 16 8 O -0.56 -7.26 16.10 16.03 0.26 -7.00 16 9 N -0.69 3.59 5.27 -440.04 -2.32 1.27 16 10 C 0.11 -0.52 4.32 45.51 0.20 -0.32 16 11 H 0.09 0.01 7.46 -2.39 -0.02 0.00 16 12 C -0.14 0.46 7.43 31.12 0.23 0.69 16 13 C -0.11 1.08 3.64 -10.27 -0.04 1.04 16 14 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 15 C 0.11 -1.20 6.29 86.38 0.54 -0.66 16 16 N -0.28 0.50 3.44 -347.73 -1.20 -0.70 16 17 C -0.04 0.16 11.57 83.49 0.97 1.13 16 18 C -0.07 -0.13 12.05 83.73 1.01 0.88 16 19 N -0.33 -3.50 12.41 -58.25 -0.72 -4.22 16 20 N -0.12 -0.96 12.93 37.02 0.48 -0.48 16 21 C -0.11 1.38 7.39 31.12 0.23 1.61 16 22 C -0.11 -0.01 8.54 22.35 0.19 0.18 16 23 C -0.05 -0.18 6.85 36.38 0.25 0.07 16 24 N 0.04 0.36 4.45 -46.46 -0.21 0.15 16 25 O -0.19 -2.11 18.44 18.89 0.35 -1.76 16 26 O -0.16 -2.16 14.62 25.09 0.37 -1.80 16 27 C -0.04 0.01 5.26 -19.86 -0.10 -0.10 16 28 C -0.09 -0.03 1.74 71.24 0.12 0.09 16 29 O -0.54 -0.84 11.80 -129.64 -1.53 -2.37 16 30 Si 0.79 -4.08 29.91 68.60 2.05 -2.03 16 31 C -0.16 0.80 7.65 22.35 0.17 0.97 16 32 H 0.08 -1.06 7.65 -2.39 -0.02 -1.08 16 33 H 0.09 -1.38 7.68 -2.38 -0.02 -1.40 16 34 H 0.12 -1.37 8.14 -2.39 -0.02 -1.39 16 35 H 0.13 -1.29 7.66 -2.39 -0.02 -1.31 16 36 H 0.12 -1.06 7.66 -2.39 -0.02 -1.08 16 37 H 0.42 -4.94 8.70 -92.71 -0.81 -5.75 16 38 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.10 -0.30 7.90 -2.39 -0.02 -0.32 16 40 H 0.11 -1.25 7.84 -2.39 -0.02 -1.26 16 41 H 0.15 -2.72 8.07 -2.39 -0.02 -2.74 16 42 H 0.24 -3.49 8.06 -2.91 -0.02 -3.51 16 43 H 0.21 -0.84 8.06 -2.91 -0.02 -0.86 16 44 H 0.12 -1.90 8.10 -2.39 -0.02 -1.92 16 45 H 0.10 -1.50 8.14 -2.39 -0.02 -1.52 16 46 H 0.18 -0.77 5.85 -2.91 -0.02 -0.79 16 47 H 0.12 0.58 6.07 -2.39 -0.01 0.57 16 48 H 0.39 -3.28 8.70 -74.05 -0.64 -3.93 16 49 H -0.27 0.53 7.11 99.48 0.71 1.24 16 50 H -0.29 -0.83 7.11 99.48 0.71 -0.13 16 51 H 0.19 -2.40 3.36 -2.91 -0.01 -2.41 16 Total: 0.00 -44.77 433.78 1.96 -42.81 By element: Atomic # 1 Polarization: -29.87 SS G_CDS: -0.37 Total: -30.24 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 6.25 Total: 8.94 kcal Atomic # 7 Polarization: -0.01 SS G_CDS: -3.97 Total: -3.98 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -2.01 Total: -15.50 kcal Atomic # 14 Polarization: -4.08 SS G_CDS: 2.05 Total: -2.03 kcal Total: -44.77 1.96 -42.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567714_4549636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.795 kcal (2) G-P(sol) polarization free energy of solvation -44.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds