Wall clock time and date at job start Tue Mar 9 2021 15:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36000 * 117.00109 * 2 1 4 4 C 1.39149 * 120.07371 * 179.97438 * 3 2 1 5 5 O 1.35996 * 120.07631 * 359.97438 * 4 3 2 6 6 C 1.42900 * 117.00224 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.46972 * 180.02562 * 6 5 4 8 8 O 1.21286 * 120.00282 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99763 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99952 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.84852 * 25.33640 * 10 9 7 12 12 C 1.53781 * 113.61361 * 156.53041 * 10 9 7 13 13 C 1.53781 * 87.08070 * 89.11956 * 12 10 9 14 14 H 1.08998 * 113.61172 * 270.88476 * 13 12 10 15 15 C 1.52993 * 113.61492 * 140.06794 * 13 12 10 16 16 N 1.46501 * 109.47405 * 174.99701 * 15 13 12 17 17 C 1.35309 * 125.86844 * 124.99441 * 16 15 13 18 18 C 1.35347 * 106.17572 * 180.02562 * 17 16 15 19 19 N 1.33771 * 106.49843 * 0.02562 * 18 17 16 20 20 N 1.28633 * 108.88077 * 359.73347 * 19 18 17 21 21 C 1.53773 * 113.61686 * 254.13880 * 10 9 7 22 22 C 1.38570 * 119.85061 * 180.25136 * 4 3 2 23 23 C 1.38241 * 120.00020 * 359.43341 * 22 4 3 24 24 C 1.38249 * 120.14506 * 0.59271 * 23 22 4 25 25 C 1.50699 * 119.92672 * 179.70579 * 24 23 22 26 26 O 1.42898 * 109.47041 * 244.97661 * 25 24 23 27 27 Si 1.86298 * 109.47050 * 4.97669 * 25 24 23 28 28 C 1.38243 * 120.14844 * 359.68131 * 24 23 22 29 29 H 1.08997 * 109.47142 * 59.99666 * 1 2 3 30 30 H 1.08996 * 109.46850 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47135 * 299.99811 * 1 2 3 32 32 H 1.09001 * 109.46945 * 59.99851 * 6 5 4 33 33 H 1.09002 * 109.46785 * 300.00337 * 6 5 4 34 34 H 0.96997 * 120.00341 * 359.97438 * 9 7 6 35 35 H 1.09001 * 113.61158 * 203.66864 * 12 10 9 36 36 H 1.08998 * 113.61196 * 334.56885 * 12 10 9 37 37 H 1.09002 * 109.46900 * 294.99582 * 15 13 12 38 38 H 1.08998 * 109.47474 * 54.99773 * 15 13 12 39 39 H 1.07999 * 126.91273 * 359.97438 * 17 16 15 40 40 H 1.08012 * 126.75060 * 180.02562 * 18 17 16 41 41 H 1.09007 * 113.61678 * 25.42910 * 21 10 9 42 42 H 1.09000 * 113.61916 * 156.33583 * 21 10 9 43 43 H 1.08005 * 119.99591 * 179.71732 * 22 4 3 44 44 H 1.07999 * 119.92813 * 180.29662 * 23 22 4 45 45 H 1.09000 * 109.47186 * 124.97689 * 25 24 23 46 46 H 0.96707 * 113.99890 * 179.97438 * 26 25 24 47 47 H 1.48499 * 110.00173 * 299.99830 * 27 25 24 48 48 H 1.48493 * 110.00172 * 61.32015 * 27 25 24 49 49 H 1.08003 * 120.00184 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4360 1.2863 0.0005 5 8 4.1796 0.1477 0.0016 6 6 5.6004 0.3007 0.0015 7 6 6.2519 -1.0581 0.0021 8 8 5.5670 -2.0591 0.0021 9 7 7.5957 -1.1611 0.0027 10 6 8.2292 -2.4821 0.0039 11 1 7.5937 -3.2566 -0.4257 12 6 9.6611 -2.4791 -0.5568 13 6 10.1376 -2.1906 0.8766 14 1 10.1881 -1.1281 1.1144 15 6 11.4100 -2.9470 1.2634 16 7 11.8480 -2.5177 2.5939 17 6 12.0749 -3.3279 3.6536 18 6 12.4595 -2.5208 4.6697 19 7 12.4487 -1.2727 4.1885 20 7 12.0871 -1.3055 2.9544 21 6 8.8422 -2.8701 1.3597 22 6 4.0603 2.5234 0.0058 23 6 3.3029 3.6799 -0.0013 24 6 1.9224 3.6058 -0.0013 25 6 1.1016 4.8696 -0.0024 26 8 0.3642 4.9597 1.2183 27 14 2.2309 6.3433 -0.1559 28 6 1.2932 2.3748 -0.0009 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 5.9065 0.8513 0.8910 33 1 5.9066 0.8498 -0.8889 34 1 8.1435 -0.3606 0.0023 35 1 9.9831 -3.4485 -0.9371 36 1 9.8553 -1.6640 -1.2539 37 1 11.2065 -4.0178 1.2758 38 1 12.1941 -2.7346 0.5367 39 1 11.9694 -4.4023 3.6829 40 1 12.7233 -2.8247 5.6721 41 1 8.3759 -2.3705 2.2088 42 1 8.9408 -3.9463 1.5024 43 1 5.1386 2.5840 0.0109 44 1 3.7907 4.6434 -0.0020 45 1 0.4097 4.8528 -0.8445 46 1 -0.1877 5.7509 1.2869 47 1 3.1792 6.3777 0.9863 48 1 2.9802 6.2779 -1.4363 49 1 0.2146 2.3197 -0.0013 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567714_60476.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:01:13 Heat of formation + Delta-G solvation = 27.634847 kcal Electronic energy + Delta-G solvation = -33062.871718 eV Core-core repulsion = 28382.481847 eV Total energy + Delta-G solvation = -4680.389870 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.17793 -41.98794 -41.38679 -40.04799 -39.18649 -38.79255 -37.06580 -35.82692 -34.31180 -32.26644 -31.96218 -31.64993 -30.23611 -29.03284 -28.48283 -26.80924 -26.24638 -24.89567 -23.81741 -23.54479 -22.65566 -22.33380 -21.94649 -20.36293 -19.86281 -18.80208 -18.52702 -18.33675 -18.24189 -17.76178 -17.60816 -17.39807 -17.02968 -16.72108 -16.36282 -16.11357 -15.91958 -15.76434 -15.70154 -15.55650 -15.27938 -15.11009 -14.79668 -14.47007 -14.23942 -14.14334 -14.04662 -13.69724 -13.63239 -13.50676 -13.01119 -12.84717 -12.75171 -12.48698 -12.35183 -12.33487 -12.28821 -12.12052 -11.89679 -11.87023 -11.77743 -11.52900 -11.15448 -10.90250 -10.34068 -10.32550 -10.25246 -9.93910 -9.07029 -4.92220 0.00461 0.07451 0.68054 1.29589 1.30377 1.33194 1.50668 1.61362 1.66676 1.97492 2.18919 2.36464 2.42739 3.29158 3.32773 3.36505 3.39501 3.49734 3.61103 3.66806 3.67042 3.71917 3.82363 3.86281 3.94611 4.01187 4.07043 4.12240 4.13001 4.24450 4.28038 4.32693 4.34224 4.39491 4.44580 4.45590 4.59921 4.62848 4.69316 4.72065 4.77154 4.82165 4.89916 4.91676 4.99584 5.07576 5.19940 5.26289 5.39074 5.45540 5.70848 5.81988 6.26723 6.38914 6.90285 6.99274 7.52764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.086 3.914 4 C 0.084 3.916 5 O -0.308 6.308 6 C 0.032 3.968 7 C 0.517 3.483 8 O -0.566 6.566 9 N -0.696 5.696 10 C 0.110 3.890 11 H 0.090 0.910 12 C -0.112 4.112 13 C -0.119 4.119 14 H 0.092 0.908 15 C 0.115 3.885 16 N -0.283 5.283 17 C -0.036 4.036 18 C -0.074 4.074 19 N -0.322 5.322 20 N -0.123 5.123 21 C -0.147 4.147 22 C -0.162 4.162 23 C -0.134 4.134 24 C -0.084 4.084 25 C -0.080 4.080 26 O -0.565 6.565 27 Si 0.777 3.223 28 C -0.147 4.147 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.419 0.581 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.143 0.857 38 H 0.117 0.883 39 H 0.232 0.768 40 H 0.208 0.792 41 H 0.047 0.953 42 H 0.112 0.888 43 H 0.169 0.831 44 H 0.131 0.869 45 H 0.095 0.905 46 H 0.404 0.596 47 H -0.294 1.294 48 H -0.285 1.285 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.485 1.062 -4.316 4.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.040 3.960 4 C 0.039 3.961 5 O -0.222 6.222 6 C -0.046 4.046 7 C 0.304 3.696 8 O -0.444 6.444 9 N -0.349 5.349 10 C 0.005 3.995 11 H 0.108 0.892 12 C -0.150 4.150 13 C -0.138 4.138 14 H 0.111 0.889 15 C -0.004 4.004 16 N -0.077 5.077 17 C -0.188 4.188 18 C -0.232 4.232 19 N -0.187 5.187 20 N -0.103 5.103 21 C -0.186 4.186 22 C -0.180 4.180 23 C -0.151 4.151 24 C -0.085 4.085 25 C -0.189 4.189 26 O -0.375 6.375 27 Si 0.683 3.317 28 C -0.165 4.165 29 H 0.088 0.912 30 H 0.133 0.867 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.256 0.744 35 H 0.145 0.855 36 H 0.111 0.889 37 H 0.161 0.839 38 H 0.135 0.865 39 H 0.249 0.751 40 H 0.225 0.775 41 H 0.066 0.934 42 H 0.130 0.870 43 H 0.186 0.814 44 H 0.149 0.851 45 H 0.113 0.887 46 H 0.255 0.745 47 H -0.221 1.221 48 H -0.212 1.212 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.129 1.154 -4.768 5.034 hybrid contribution -0.023 -1.175 0.572 1.307 sum 1.106 -0.020 -4.196 4.339 Atomic orbital electron populations 1.23360 0.76384 1.05544 1.02366 1.86199 1.23408 1.26041 1.88860 1.18621 0.89634 0.85895 1.01844 1.18491 0.88505 0.86149 1.02991 1.86218 1.18026 1.28618 1.89304 1.22763 0.79554 0.95626 1.06630 1.20402 0.83056 0.90558 0.75622 1.90767 1.63984 1.39853 1.49776 1.45400 1.04982 1.10015 1.74550 1.21918 0.94875 0.84916 0.97804 0.89206 1.23289 0.91300 1.05671 0.94732 1.22928 0.92227 1.00494 0.98155 0.88948 1.22631 0.97821 1.02188 0.77790 1.47824 1.41780 1.05106 1.12986 1.24380 1.06103 1.01486 0.86815 1.24203 1.06993 0.88796 1.03159 1.75078 1.17650 1.23749 1.02210 1.78176 1.19229 1.03851 1.09005 1.23636 0.95837 1.02300 0.96835 1.21249 1.01923 0.89623 1.05196 1.20818 0.93372 0.98176 1.02782 1.19490 0.93355 0.94579 1.01051 1.24863 1.01561 1.01942 0.90540 1.86449 1.63795 1.50233 1.37017 0.94302 0.78738 0.82310 0.76376 1.21092 1.01031 0.89979 1.04430 0.91210 0.86719 0.91735 0.86373 0.85586 0.74387 0.85495 0.88867 0.83923 0.86502 0.75122 0.77525 0.93398 0.87021 0.81357 0.85142 0.88722 0.74480 1.22134 1.21188 0.82766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.81 113.37 1.11 1.16 16 2 O -0.33 -4.14 10.28 -79.68 -0.82 -4.96 16 3 C 0.09 0.96 6.70 22.57 0.15 1.11 16 4 C 0.08 0.84 6.70 22.57 0.15 0.99 16 5 O -0.31 -3.65 9.45 -67.09 -0.63 -4.29 16 6 C 0.03 0.05 5.22 71.23 0.37 0.42 16 7 C 0.52 2.89 7.91 87.66 0.69 3.58 16 8 O -0.57 -9.57 16.12 15.99 0.26 -9.32 16 9 N -0.70 1.76 5.26 -440.04 -2.32 -0.55 16 10 C 0.11 -0.39 4.29 45.51 0.20 -0.19 16 11 H 0.09 0.09 7.50 -2.39 -0.02 0.07 16 12 C -0.11 1.21 7.38 31.12 0.23 1.43 16 13 C -0.12 0.94 3.72 -10.18 -0.04 0.90 16 14 H 0.09 -0.38 7.91 -2.39 -0.02 -0.39 16 15 C 0.11 -1.10 6.30 86.38 0.54 -0.56 16 16 N -0.28 0.23 3.44 -347.75 -1.20 -0.97 16 17 C -0.04 0.12 11.57 83.49 0.97 1.08 16 18 C -0.07 -0.20 12.05 83.73 1.01 0.81 16 19 N -0.32 -3.55 12.41 -58.25 -0.72 -4.27 16 20 N -0.12 -1.00 12.77 37.02 0.47 -0.53 16 21 C -0.15 0.67 7.45 31.21 0.23 0.90 16 22 C -0.16 -0.72 9.04 22.35 0.20 -0.51 16 23 C -0.13 -0.72 8.66 22.27 0.19 -0.53 16 24 C -0.08 -0.49 5.38 -19.86 -0.11 -0.59 16 25 C -0.08 0.05 2.79 71.24 0.20 0.25 16 26 O -0.56 0.13 12.81 -148.98 -1.91 -1.78 16 27 Si 0.78 -2.20 29.84 68.60 2.05 -0.15 16 28 C -0.15 -1.03 8.67 22.35 0.19 -0.84 16 29 H 0.07 -0.04 7.66 -2.39 -0.02 -0.05 16 30 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.06 0.06 7.67 -2.39 -0.02 0.04 16 32 H 0.12 -0.47 7.65 -2.39 -0.02 -0.49 16 33 H 0.13 -0.70 7.68 -2.39 -0.02 -0.71 16 34 H 0.42 -3.69 8.70 -92.71 -0.81 -4.49 16 35 H 0.13 -1.88 8.10 -2.39 -0.02 -1.89 16 36 H 0.09 -1.10 8.14 -2.39 -0.02 -1.12 16 37 H 0.14 -2.30 7.78 -2.39 -0.02 -2.32 16 38 H 0.12 -1.37 8.14 -2.39 -0.02 -1.39 16 39 H 0.23 -2.99 8.06 -2.91 -0.02 -3.01 16 40 H 0.21 -0.64 8.06 -2.90 -0.02 -0.66 16 41 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 42 H 0.11 -0.87 7.91 -2.39 -0.02 -0.89 16 43 H 0.17 -0.54 6.30 -2.91 -0.02 -0.55 16 44 H 0.13 0.41 4.85 -2.91 -0.01 0.40 16 45 H 0.09 -0.46 7.96 -2.39 -0.02 -0.47 16 46 H 0.40 -4.45 8.74 -74.05 -0.65 -5.10 16 47 H -0.29 -1.27 7.05 99.48 0.70 -0.57 16 48 H -0.28 -0.60 7.11 99.48 0.71 0.11 16 49 H 0.15 0.48 6.30 -2.91 -0.02 0.47 16 Total: 0.00 -41.53 411.59 1.07 -40.46 By element: Atomic # 1 Polarization: -22.63 SS G_CDS: -0.41 Total: -23.04 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 6.30 Total: 9.40 kcal Atomic # 7 Polarization: -2.56 SS G_CDS: -3.76 Total: -6.32 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -3.10 Total: -20.35 kcal Atomic # 14 Polarization: -2.20 SS G_CDS: 2.05 Total: -0.15 kcal Total: -41.53 1.07 -40.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567714_60476.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.093 kcal (2) G-P(sol) polarization free energy of solvation -41.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds