Wall clock time and date at job start Tue Mar 9 2021 12:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86307 * 109.47001 * 2 1 4 4 C 1.50705 * 109.46886 * 119.99509 * 2 1 3 5 5 C 1.38240 * 119.94416 * 244.98204 * 4 2 1 6 6 C 1.38182 * 120.07183 * 180.02562 * 5 4 2 7 7 C 1.38684 * 119.95611 * 359.74396 * 6 5 4 8 8 O 1.35906 * 120.06048 * 180.27477 * 7 6 5 9 9 C 1.42905 * 117.00301 * 0.25738 * 8 7 6 10 10 C 1.50701 * 109.47322 * 180.02562 * 9 8 7 11 11 O 1.21287 * 119.99638 * 359.97438 * 10 9 8 12 12 N 1.34769 * 120.00019 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00079 * 179.97438 * 12 10 9 14 14 H 1.09002 * 112.84806 * 336.19355 * 13 12 10 15 15 C 1.53778 * 113.61475 * 107.50152 * 13 12 10 16 16 C 1.53778 * 87.08276 * 89.11824 * 15 13 12 17 17 H 1.09003 * 113.69111 * 270.87581 * 16 15 13 18 18 N 1.46501 * 113.61601 * 139.98228 * 16 15 13 19 19 C 1.35311 * 125.86851 * 347.50067 * 18 16 15 20 20 C 1.35345 * 106.17553 * 179.97438 * 19 18 16 21 21 N 1.33773 * 106.49799 * 0.02562 * 20 19 18 22 22 N 1.28637 * 108.88232 * 359.73453 * 21 20 19 23 23 C 1.53783 * 87.08164 * 25.43412 * 16 15 13 24 24 C 1.38833 * 119.87877 * 0.52970 * 7 6 5 25 25 Br 1.89100 * 120.03696 * 179.74791 * 24 7 6 26 26 C 1.38205 * 119.92757 * 359.47277 * 24 7 6 27 27 H 0.96701 * 114.00103 * 300.00389 * 1 2 3 28 28 H 1.08995 * 109.47584 * 240.00019 * 2 1 3 29 29 H 1.48502 * 110.00009 * 178.67586 * 3 2 1 30 30 H 1.48500 * 110.00017 * 299.99685 * 3 2 1 31 31 H 1.07998 * 119.96030 * 359.97438 * 5 4 2 32 32 H 1.08001 * 120.02355 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.46427 * 299.99466 * 9 8 7 34 34 H 1.09000 * 109.46927 * 59.99463 * 9 8 7 35 35 H 0.96997 * 120.00379 * 359.97438 * 12 10 9 36 36 H 1.08997 * 113.61357 * 203.66642 * 15 13 12 37 37 H 1.09002 * 113.61571 * 334.56923 * 15 13 12 38 38 H 1.07991 * 126.91142 * 0.02562 * 19 18 16 39 39 H 1.07999 * 126.75471 * 180.02562 * 20 19 18 40 40 H 1.09005 * 113.61078 * 220.02458 * 23 16 15 41 41 H 1.08992 * 113.61283 * 89.11727 * 23 16 15 42 42 H 1.07997 * 119.97568 * 180.23186 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.6389 -0.0111 2.1905 6 6 3.1011 -0.6599 3.3195 7 6 2.8502 -2.0128 3.4923 8 8 3.2990 -2.6518 4.6047 9 6 4.0179 -1.8669 5.5583 10 6 4.4336 -2.7385 6.7152 11 8 4.1424 -3.9159 6.7227 12 7 5.1288 -2.2098 7.7415 13 6 5.5324 -3.0570 8.8665 14 1 4.9005 -3.9377 8.9811 15 6 7.0380 -3.3689 8.8937 16 6 7.2083 -2.0883 9.7279 17 1 7.3664 -1.1923 9.1276 18 7 8.1791 -2.2221 10.8169 19 6 8.7120 -3.3820 11.2659 20 6 9.5537 -3.0460 12.2712 21 7 9.4948 -1.7145 12.3869 22 7 8.6755 -1.2561 11.5076 23 6 5.7497 -2.2802 10.1759 24 6 2.1443 -2.7145 2.5244 25 35 1.8059 -4.5610 2.7521 26 6 1.6843 -2.0607 1.3970 27 1 -0.3933 0.4417 0.7650 28 1 1.7924 -0.5138 -0.8899 29 1 3.5346 1.7704 0.0322 30 1 1.5615 2.4679 -1.2085 31 1 2.8313 1.0433 2.0573 32 1 3.6535 -0.1127 4.0692 33 1 4.9044 -1.4437 5.0859 34 1 3.3795 -1.0612 5.9207 35 1 5.3620 -1.2683 7.7354 36 1 7.2852 -4.2805 9.4377 37 1 7.5122 -3.3178 7.9136 38 1 8.5076 -4.3757 10.8960 39 1 10.1546 -3.7201 12.8635 40 1 5.1839 -1.3501 10.2307 41 1 5.6449 -2.8941 11.0703 42 1 1.1319 -2.6050 0.6454 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567748_6201210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:35 Heat of formation + Delta-G solvation = 71.544217 kcal Electronic energy + Delta-G solvation = -28712.529855 eV Core-core repulsion = 24323.983465 eV Total energy + Delta-G solvation = -4388.546390 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 409.047 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.26008 -41.76305 -41.14822 -39.76982 -38.89063 -37.20250 -35.25240 -33.66382 -33.41683 -32.00023 -31.90828 -30.52818 -29.62482 -27.06560 -26.77372 -26.21618 -24.13610 -23.58737 -22.96278 -22.44246 -21.92180 -20.64338 -19.60392 -18.99345 -18.44840 -18.05338 -17.51326 -17.34802 -17.15846 -16.98584 -16.44192 -16.05460 -15.94935 -15.70420 -15.68795 -15.47902 -15.20790 -14.77290 -14.66380 -14.43073 -14.10072 -13.81752 -13.77507 -13.71697 -13.61413 -13.36730 -12.75282 -12.37815 -12.33220 -12.17784 -12.12651 -12.03683 -11.90822 -11.83668 -11.64101 -11.23031 -11.05595 -10.99109 -10.42466 -10.36525 -10.28873 -9.97000 -9.31877 -4.98333 -0.04984 0.12228 0.62561 0.64427 1.33125 1.35905 1.41248 1.43198 1.60280 1.66606 2.02319 2.40139 2.44640 2.95048 3.16451 3.42607 3.49243 3.51347 3.63918 3.65967 3.71088 3.77008 3.83099 4.05072 4.10649 4.12802 4.15977 4.26071 4.31853 4.33436 4.44393 4.50798 4.52794 4.64207 4.69756 4.74959 4.82708 4.84936 4.86803 5.00533 5.24085 5.24375 5.34070 5.48652 5.69469 6.06058 6.38837 6.79620 7.09165 7.51135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.076 4.076 3 Si 0.788 3.212 4 C -0.153 4.153 5 C -0.053 4.053 6 C -0.188 4.188 7 C 0.150 3.850 8 O -0.305 6.305 9 C 0.029 3.971 10 C 0.519 3.481 11 O -0.562 6.562 12 N -0.696 5.696 13 C 0.131 3.869 14 H 0.105 0.895 15 C -0.146 4.146 16 C 0.108 3.892 17 H 0.149 0.851 18 N -0.276 5.276 19 C -0.038 4.038 20 C -0.067 4.067 21 N -0.319 5.319 22 N -0.124 5.124 23 C -0.136 4.136 24 C -0.145 4.145 25 Br -0.055 7.055 26 C -0.037 4.037 27 H 0.396 0.604 28 H 0.103 0.897 29 H -0.277 1.277 30 H -0.306 1.306 31 H 0.167 0.833 32 H 0.183 0.817 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.423 0.577 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.227 0.773 39 H 0.211 0.789 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.115 5.264 0.643 5.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.185 4.185 3 Si 0.693 3.307 4 C -0.155 4.155 5 C -0.071 4.071 6 C -0.207 4.207 7 C 0.102 3.898 8 O -0.217 6.217 9 C -0.048 4.048 10 C 0.305 3.695 11 O -0.439 6.439 12 N -0.351 5.351 13 C 0.025 3.975 14 H 0.123 0.877 15 C -0.186 4.186 16 C 0.007 3.993 17 H 0.166 0.834 18 N -0.070 5.070 19 C -0.189 4.189 20 C -0.225 4.225 21 N -0.184 5.184 22 N -0.103 5.103 23 C -0.176 4.176 24 C -0.225 4.225 25 Br 0.030 6.970 26 C -0.057 4.057 27 H 0.246 0.754 28 H 0.121 0.879 29 H -0.203 1.203 30 H -0.234 1.234 31 H 0.184 0.816 32 H 0.200 0.800 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.262 0.738 36 H 0.137 0.863 37 H 0.114 0.886 38 H 0.244 0.756 39 H 0.228 0.772 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.099 5.353 0.058 5.354 hybrid contribution 0.253 -1.284 -0.536 1.414 sum 0.352 4.069 -0.478 4.112 Atomic orbital electron populations 1.86492 1.17390 1.82226 1.50534 1.25271 0.85267 1.11314 0.96639 0.93824 0.77797 0.74031 0.85040 1.20364 1.02697 0.93721 0.98708 1.21258 0.93544 1.00628 0.91670 1.21587 1.05831 0.91583 1.01719 1.18770 0.93267 0.91725 0.86019 1.86240 1.68958 1.37909 1.28628 1.22897 0.99955 0.93767 0.88185 1.20458 0.77340 0.87955 0.83701 1.90814 1.55264 1.18620 1.79153 1.45333 1.56276 1.14121 1.19339 1.21511 0.95437 0.95150 0.85441 0.87663 1.23968 0.96444 0.96794 1.01366 1.23887 0.86347 1.03247 0.85802 0.83370 1.47776 1.29436 1.04970 1.24802 1.24196 1.00073 0.94685 0.99938 1.24216 1.04030 0.92608 1.01670 1.75092 1.14521 1.11872 1.16869 1.78244 1.10711 1.16444 1.04868 1.23772 0.92776 1.03137 0.97865 1.21276 1.09888 0.91891 0.99416 1.96763 1.94974 1.07532 1.97699 1.20877 0.95824 0.94496 0.94497 0.75400 0.87922 1.20308 1.23442 0.81612 0.80017 0.84989 0.84697 0.73801 0.86343 0.88567 0.75618 0.77227 0.87581 0.87665 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.88 12.83 -148.98 -1.91 -1.04 16 2 C -0.08 0.25 2.80 71.24 0.20 0.45 16 3 Si 0.79 -5.03 29.80 68.60 2.04 -2.99 16 4 C -0.15 0.47 5.35 -19.85 -0.11 0.36 16 5 C -0.05 0.42 8.66 22.26 0.19 0.62 16 6 C -0.19 1.53 9.04 22.36 0.20 1.73 16 7 C 0.15 -0.05 6.68 22.52 0.15 0.10 16 8 O -0.30 -0.36 9.01 -73.45 -0.66 -1.02 16 9 C 0.03 -0.28 5.22 71.24 0.37 0.09 16 10 C 0.52 -2.15 7.91 87.66 0.69 -1.45 16 11 O -0.56 -4.55 16.10 15.99 0.26 -4.29 16 12 N -0.70 8.26 5.26 -440.03 -2.32 5.95 16 13 C 0.13 -1.32 4.32 45.52 0.20 -1.12 16 14 H 0.11 -0.57 7.46 -2.39 -0.02 -0.59 16 15 C -0.15 1.67 7.22 31.12 0.22 1.90 16 16 C 0.11 -1.04 4.84 45.52 0.22 -0.82 16 17 H 0.15 -1.88 8.14 -2.39 -0.02 -1.90 16 18 N -0.28 0.42 3.53 -324.68 -1.15 -0.73 16 19 C -0.04 0.14 10.78 83.49 0.90 1.04 16 20 C -0.07 -0.10 12.05 83.73 1.01 0.91 16 21 N -0.32 -3.14 12.41 -58.26 -0.72 -3.86 16 22 N -0.12 -0.92 13.16 37.02 0.49 -0.43 16 23 C -0.14 1.54 7.63 31.12 0.24 1.77 16 24 C -0.14 -0.56 6.24 22.40 0.14 -0.42 16 25 Br -0.05 -0.43 33.16 -20.37 -0.68 -1.11 16 26 C -0.04 -0.06 9.42 22.27 0.21 0.15 16 27 H 0.40 -3.98 8.70 -74.06 -0.64 -4.62 16 28 H 0.10 -0.13 7.96 -2.39 -0.02 -0.15 16 29 H -0.28 0.80 7.11 99.48 0.71 1.51 16 30 H -0.31 -0.80 7.11 99.48 0.71 -0.09 16 31 H 0.17 -2.35 4.90 -2.91 -0.01 -2.36 16 32 H 0.18 -3.08 6.30 -2.91 -0.02 -3.10 16 33 H 0.13 -2.17 7.65 -2.38 -0.02 -2.19 16 34 H 0.14 -2.26 7.67 -2.39 -0.02 -2.28 16 35 H 0.42 -8.17 8.70 -92.71 -0.81 -8.98 16 36 H 0.12 -1.55 6.33 -2.39 -0.02 -1.57 16 37 H 0.10 -1.07 8.14 -2.39 -0.02 -1.08 16 38 H 0.23 -2.86 6.73 -2.92 -0.02 -2.88 16 39 H 0.21 -0.96 8.06 -2.91 -0.02 -0.98 16 40 H 0.11 -1.38 8.14 -2.38 -0.02 -1.40 16 41 H 0.10 -1.02 8.14 -2.39 -0.02 -1.04 16 42 H 0.13 0.34 8.06 -2.91 -0.02 0.31 16 Total: 0.00 -37.51 378.72 -0.11 -37.61 By element: Atomic # 1 Polarization: -33.09 SS G_CDS: -0.30 Total: -33.40 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 4.84 Total: 5.30 kcal Atomic # 7 Polarization: 4.62 SS G_CDS: -3.70 Total: 0.92 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -2.32 Total: -6.34 kcal Atomic # 14 Polarization: -5.03 SS G_CDS: 2.04 Total: -2.99 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -0.68 Total: -1.11 kcal Total: -37.51 -0.11 -37.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567748_6201210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.158 kcal (2) G-P(sol) polarization free energy of solvation -37.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds